View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12056_high_13 (Length: 357)
Name: NF12056_high_13
Description: NF12056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12056_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 35045670 - 35045872
Alignment:
| Q |
6 |
tgcaatgtatagtggattgtctactaagaaagnnnnnnnn-tatgcatgcatattgtcatgaaaaaccaataagctttgtcgccatcaagggtacgataa |
104 |
Q |
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| T |
35045670 |
tgcaatgtatagtggattgtctactaagaaagaaaaaaaaatatgcatgcatattgtcatgaaaaaccaataagctttgtcgccatcaagggtacgataa |
35045769 |
T |
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| Q |
105 |
tatttgctatttcaaatgctatttcttcaaacttggaaaacaaaataaaaagagcatgtagcggttaaggaccacaagaagcttacacaatacatgatg- |
203 |
Q |
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| T |
35045770 |
tatttgct------------atttcttcaaactcggaaaacaaaataaaaagagcatgtagcggttaaggaccacaagaagcttacacaatacatgatgt |
35045857 |
T |
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| Q |
204 |
tttattgagtaattt |
218 |
Q |
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||||||||||||||| |
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| T |
35045858 |
tttattgagtaattt |
35045872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 204 - 341
Target Start/End: Original strand, 35045894 - 35046031
Alignment:
| Q |
204 |
tttattgagtaatttaatttactaacaaattgagaactagttttatttaagtaaaaaattatattatggtgctcccttaaataagtgggtttaattaagt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35045894 |
tttattgagtaatttaatttactaacaaattgagaactagttttatttaagtaacaaattatattatggtgctccctgaaataagtgggtttaattaagt |
35045993 |
T |
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| Q |
304 |
ataatatttacatcggtagtgtgatcaaccattggaat |
341 |
Q |
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| T |
35045994 |
ataatatttacatcggtagtgagatcaaccattggaat |
35046031 |
T |
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