View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12056_high_16 (Length: 330)
Name: NF12056_high_16
Description: NF12056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12056_high_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 46838161 - 46838476
Alignment:
| Q |
15 |
ggggatcaaggttaatcaaactcaagctcttgccttgccttctgcttgcaatgtgcaaactccaccaacatctcagtgcaaaagtaagtcaccaacattt |
114 |
Q |
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| T |
46838161 |
ggggatcaaggttaatcaaactcaagctcttgccttgccttctgcttgcaatgtgcaaactccaccaacatctcagtgcaaaagtaagtcaccaacattt |
46838260 |
T |
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| Q |
115 |
cttgtaaactgatttttcttcgaatttgatagacgaaaaattaaatttgaagtttttgctttaaccattgattttaagtttcaatcnnnnnnnnnaatgt |
214 |
Q |
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| T |
46838261 |
cttgtaaactgatttttcttcgaatttgatagacgaaaaattaaatttgaagtttttgctttaaccattgattttaagtttcaatctttttttttaatgt |
46838360 |
T |
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| Q |
215 |
aaatgccaatcttttgttcagcataattttacattaattaataaattcaaatacaaatcattttatatcaaacttatttttaacacgtctggtttttgtt |
314 |
Q |
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| T |
46838361 |
aaatgccaatcttttgttcaacacaattttacattaattaataaattcaaatacaaatcattttatatcaaacttacttttaacacgtctgacttttgtt |
46838460 |
T |
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| Q |
315 |
gttcgtttacattttg |
330 |
Q |
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| T |
46838461 |
gttcatttacattttg |
46838476 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 1146889 - 1146941
Alignment:
| Q |
28 |
aatcaaactcaagctcttgccttgccttctgcttgcaatgtgcaaactccacc |
80 |
Q |
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| T |
1146889 |
aatcaaactcaggctctggccttgcctggtgcttgcaaggtgcaaaccccacc |
1146941 |
T |
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