View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12056_high_24 (Length: 236)
Name: NF12056_high_24
Description: NF12056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12056_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 23737008 - 23737217
Alignment:
| Q |
12 |
agaagaatttgaactaactgctatttcccatacctgtgaattagtgatcaacaaaattgatttcatttgttaagaatgaatagtcgagaatgagttgtta |
111 |
Q |
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| T |
23737008 |
agaagaatttgaactaactgctatttcccatacctgtgaattggtgatcaacaaaattgatttcatttgttaagaatgaatagtcaagaatgagttgtta |
23737107 |
T |
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| Q |
112 |
gaatttagttcaattaattttaggatctttccaagatatgctttgaaagaagaagnnnnnnnctattagaagacttactatctggttatgctttgaaatt |
211 |
Q |
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| T |
23737108 |
gaatttagttcaattaattttaggatctttcctagatatgctttgaaagaagaagaaaaaaactattagaagacttactatctggttatgctttgaaatt |
23737207 |
T |
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| Q |
212 |
gtagttattt |
221 |
Q |
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|||||||||| |
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| T |
23737208 |
gtagttattt |
23737217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 23687046 - 23687236
Alignment:
| Q |
12 |
agaagaatttgaactaactgctatttcccatacctgtgaattagtgatcaacaaaattgatttcatttgttaagaatgaatagtcgagaatgagttgtta |
111 |
Q |
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| T |
23687046 |
agaagaatttgaactaactgctatttcccatacctgtga--------tcaacaaaattgatttcatttgttaaggataaatagt-----------tgtta |
23687126 |
T |
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| Q |
112 |
gaatttagttcaattaattttaggatctttccaagatatgctttgaaagaagaagnnnnnnnctattagaagacttactatctggttatgctttgaaatt |
211 |
Q |
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| T |
23687127 |
gaatttagttcaattaattttaggatctttctaagatatgctttgaaagaagaagaaaaaaactattagaagacttactatctggttatgctttgaaatt |
23687226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 23768180 - 23768003
Alignment:
| Q |
12 |
agaagaatttgaactaactgctatttcccatacctgtgaattagtgatcaacaaaattgatttcatttgttaagaatgaatagtcgagaatgagttgtta |
111 |
Q |
| |
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||||||||||||||||||||||||||||| ||| || || |||||||||| |||||||||||| |||||||||||||||||||| ||| ||||| |
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| T |
23768180 |
agaagaatttgaactaactgctatttccc---cct----atctgttatcaacaaaactgatttcatttgataagaatgaatagtcgagaacgagctgtta |
23768088 |
T |
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| Q |
112 |
gaatttagttcaattaattttaggatctttccaagatatgctt-tgaaagaagaagnnnnnnnctattagaagacttactatctggtta |
199 |
Q |
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||||| |||| ||||||||||||||||| ||||| |||| ||||||||||| ||||||||||| |||||||||||||| |
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| T |
23768087 |
gaattctgttc----aattttaggatctttcctagataggcttccgaaagaagaagaagaaaactattagaagaattactatctggtta |
23768003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 23818028 - 23817851
Alignment:
| Q |
12 |
agaagaatttgaactaactgctatttcccatacctgtgaattagtgatcaacaaaattgatttcatttgttaagaatgaatagtcgagaatgagttgtta |
111 |
Q |
| |
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||||||||||||||||||||||||||||| ||| || || |||||||||| |||||||||||| |||||||||||||||||||| ||| ||||| |
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| T |
23818028 |
agaagaatttgaactaactgctatttccc---cct----atctgttatcaacaaaactgatttcatttgataagaatgaatagtcgagaacgagctgtta |
23817936 |
T |
|
| Q |
112 |
gaatttagttcaattaattttaggatctttccaagatatgctt-tgaaagaagaagnnnnnnnctattagaagacttactatctggtta |
199 |
Q |
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||||| |||| ||||||||||||||||| ||||| |||| ||||||||||| ||||||||||| |||||||||||||| |
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| T |
23817935 |
gaattctgttc----aattttaggatctttcctagataggcttccgaaagaagaagaagaaaactattagaagaattactatctggtta |
23817851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 23730646 - 23730684
Alignment:
| Q |
12 |
agaagaatttgaactaactgctatttcccatacctgtga |
50 |
Q |
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| T |
23730646 |
agaagaatttgaactaactgctatttcccatacctgtga |
23730684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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