View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12056_low_1 (Length: 1042)

Name: NF12056_low_1
Description: NF12056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12056_low_1
NF12056_low_1
[»] chr7 (9 HSPs)
chr7 (48-1036)||(7805823-7806811)
chr7 (610-709)||(7813877-7813976)
chr7 (50-118)||(7483381-7483450)
chr7 (50-117)||(40358489-40358554)
chr7 (54-118)||(40659437-40659500)
chr7 (50-118)||(13640940-13641006)
chr7 (84-136)||(25611217-25611272)
chr7 (50-118)||(35070929-35070995)
chr7 (50-118)||(35079588-35079654)
[»] chr8 (6 HSPs)
chr8 (913-1036)||(37081008-37081131)
chr8 (50-135)||(15920056-15920141)
chr8 (50-118)||(11876417-11876484)
chr8 (50-118)||(11891424-11891491)
chr8 (74-142)||(7975937-7976008)
chr8 (808-876)||(37081149-37081218)
[»] chr3 (7 HSPs)
chr3 (50-119)||(17583222-17583289)
chr3 (50-118)||(49428590-49428656)
chr3 (58-137)||(35368313-35368390)
chr3 (50-142)||(7982779-7982872)
chr3 (53-102)||(36637183-36637230)
chr3 (50-115)||(20244329-20244392)
chr3 (50-118)||(39948900-39948966)
[»] scaffold0025 (1 HSPs)
scaffold0025 (50-118)||(11683-11749)
[»] chr5 (4 HSPs)
chr5 (54-118)||(27175183-27175245)
chr5 (50-118)||(42522707-42522773)
chr5 (50-118)||(17822169-17822235)
chr5 (50-118)||(9666174-9666240)
[»] chr1 (6 HSPs)
chr1 (934-1010)||(32953371-32953448)
chr1 (51-136)||(4968689-4968775)
chr1 (50-115)||(44717351-44717414)
chr1 (54-118)||(11067085-11067147)
chr1 (50-103)||(13334770-13334822)
chr1 (50-114)||(38340123-38340185)
[»] scaffold0018 (1 HSPs)
scaffold0018 (50-135)||(36788-36871)
[»] scaffold1017 (1 HSPs)
scaffold1017 (50-118)||(2032-2098)
[»] scaffold0003 (1 HSPs)
scaffold0003 (50-135)||(226384-226469)
[»] chr2 (4 HSPs)
chr2 (50-101)||(40303013-40303062)
chr2 (50-142)||(11538363-11538454)
chr2 (50-103)||(44856889-44856940)
chr2 (50-118)||(31054296-31054362)
[»] chr6 (1 HSPs)
chr6 (82-141)||(15926223-15926286)
[»] chr4 (2 HSPs)
chr4 (50-118)||(38004417-38004483)
chr4 (54-118)||(48171803-48171865)


Alignment Details
Target: chr7 (Bit Score: 774; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 774; E-Value: 0
Query Start/End: Original strand, 48 - 1036
Target Start/End: Complemental strand, 7806811 - 7805823
Alignment:
Q  48 ctcaacaataatataacaaatataagaaaataaatctta-----tcttttttaataacaccgaaaatataacatt---acaagaaaatttgtttaaagat 139  Q
    ||||||||||||||||||||||||| |||||||||||||     ||||||||||||||||| | |||||||||||   |||| ||||||| |||||| ||    
T  7806811 ctcaacaataatataacaaatataaaaaaataaatcttacagtatcttttttaataacaccaacaatataacattgttacaacaaaatttatttaaaaat 7806712  T
Q  140 atatctcgaaagacnnnnnnn-ccaacccaaaatccgttattctctttgaatattgtattgataaaaacacaaaagcaatacagaacgacaaaggtgaat 238  Q
    ||| || ||| |||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7806711 ataactagaatgacaaaaaaaaccaacccaaaatccgttattctctttgaatattgtattgataaaaacacaaaagcaatacagaacgacaaaggagaat 7806612  T
Q  239 cagaaaatcactccttccctcctcttcttccgcgtgacctctctccataactcaattcgtacatttttcttcttaacccaaaaccctcacaaataaattc 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||    
T  7806611 cagaaaatcactccttccctcctcttcttccgcgtgacctctctccataactcaattcctacatttttcttcttagcccaaaaccctcaccaataaattc 7806512  T
Q  339 tccattttttaatccctagaagctttcatgttcaaatcttctataaagtccatcaatttagcttaaaaggaacaagaagtaagtgagatatcccttcctc 438  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7806511 tccattttttaatctctagaagctttcatgttcaaatcttctatcaagtccatcaatttagcttaaaaggaacaagaagtaagtgagaaatcccttcctc 7806412  T
Q  439 tctctttccatgggctggcacaaaattgcccccatttttactctaaaaattccatttttccattttggtagaaattgacgttttgcatgcagaaattaga 538  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7806411 tctctttccatgggctggcacaaaattgcccccatttttactctaaaaattccatttttccattttggtagaaattgacgttttgcatgcagaaattaga 7806312  T
Q  539 ctaatatatgatgtttaaaatttggatctggggctgaaggaataggctttggaaggaagcaagtaactttgaagaatatttcactacttctaaaggtgag 638  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||   |||||||||||    
T  7806311 ctaataaatgatgtttaaaatttggatcaggggctgaaggaataggctttggaaggaagcaagtaactttgaagaagatttcacta---ctaaaggtgag 7806215  T
Q  639 ttccctaaattaagcttgaattttaatagttagaatcgaagttattgattataaataatgagtatgtgaatactttatctttaatctagactctgtttat 738  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||      |||||||||||| ||||||||||    
T  7806214 ttccctaaattaagcttgaattttaatagttagaatcggaattattgattataaataatgagtatgtgaat------tctttaatctagcctctgtttat 7806121  T
Q  739 cgttagaaaaactgaaattagtgcttagaaaaatgattcttattcatgcaagagtcaggagatagttacaaaacggtataggcaagaggagataccgttt 838  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7806120 cgttagaaaaactgaaattagtgcttagaaatatgattcttattcatgcaagagtcaggagatagttacgaaacggtataggcaagaggagataccgttt 7806021  T
Q  839 tttcctgttttagcagtgggaagacaaatcacatgaaaatgcctatatgtaacgccgttacagctgtgacacaacgttacggctgcgaccgccctttaca 938  Q
    ||||||||||||||||||||||||||||||||||||||| | | ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  7806020 tttcctgttttagcagtgggaagacaaatcacatgaaaacgtcgatatgtaacgccgatacagctgtgacacaacgttacagctgcgaccgccctttaca 7805921  T
Q  939 gctacgaaaaaataacacaatttccagatctttgtcatcacctcctctttatttacagctttgttactccttcaattcccgtatctctgctcctccac 1036  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  7805920 gctacgaaaaaataacacaatttccagatctttgtcatcacctcctctttatttacagctttgttactccttcaattcccgtatctgtcctcctccac 7805823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 610 - 709
Target Start/End: Complemental strand, 7813976 - 7813877
Alignment:
Q  610 aagaatatttcactacttctaaaggtgagttccctaaattaagcttgaattttaatagttagaatcgaagttattgattataaataatgagtatgtgaat 709  Q
    ||||| |||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  7813976 aagaagatttcactacttttaaaggtgagttctctaaactaagcttgaattttaatagttagaatcggaattattgattataaataatgagtatgtgaat 7813877  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 7483381 - 7483450
Alignment:
Q  50 caacaataatataacaaatataagaaaataaa-tcttatcttttttaataacaccgaaaatataacatta 118  Q
    |||||||||||||| |||||||| |||| ||| |||||||||||||||||||  | | ||||||||||||    
T  7483381 caacaataatataataaatataataaaaaaaaatcttatcttttttaataacgtcaacaatataacatta 7483450  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 40358554 - 40358489
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatt 117  Q
    ||||||||||||||||||||| | ||||  | |||||||||||||||||||| | | |||||||||||    
T  40358554 caacaataatataacaaatatgacaaaa--attcttatcttttttaataacatcaacaatataacatt 40358489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 40659437 - 40659500
Alignment:
Q  54 aataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    |||||||||| | |||||| |||| || |||||||||||||||||||||| | ||||||||||||    
T  40659437 aataatataaaatatataataaaa-aattcttatcttttttaataacaccaacaatataacatta 40659500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 13641006 - 13640940
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    ||||||||||||||||||||||| |||  || | | |||||||||||||| ||| | ||||||||||||    
T  13641006 caacaataatataacaaatataataaa--aattatcatcttttttaataaaaccaacaatataacatta 13640940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 136
Target Start/End: Original strand, 25611217 - 25611272
Alignment:
Q  84 ttatcttttttaataacaccgaaaatataa---cattacaagaaaatttgtttaaa 136  Q
    |||||||||||||||||||||| |||||||    |||||| |||||||||||||||    
T  25611217 ttatcttttttaataacaccgacaatataatattattacatgaaaatttgtttaaa 25611272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 35070929 - 35070995
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    ||||||||||||||||||| |||  |||  |||||||||||||||||| ||| | | ||||||||||||    
T  35070929 caacaataatataacaaatgtaaccaaa--aatcttatcttttttaattacaacaacaatataacatta 35070995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 35079588 - 35079654
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    ||||||||||||||||||| ||| ||||  | |||||||||||||||| ||| | | ||||||||||||    
T  35079588 caacaataatataacaaatgtaacaaaa--attcttatcttttttaattacaacaacaatataacatta 35079654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 3e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 913 - 1036
Target Start/End: Complemental strand, 37081131 - 37081008
Alignment:
Q  913 cgttacggctgcgaccgccctttacagctacgaaaaaataacacaatttccagatctttgtcatcacctcctctttatttacagctttgttactccttca 1012  Q
    |||||| || |||||||  | ||| |||| |||||| | |||||| |||||||||||| |||||||| ||||||||||||| |||||  |||||||||||    
T  37081131 cgttacagccgcgaccgatcgttatagctgcgaaaacagaacacagtttccagatcttggtcatcacatcctctttatttatagcttcattactccttca 37081032  T
Q  1013 attcccgtatctctgctcctccac 1036  Q
    ||||||  |||||| |||||||||    
T  37081031 attcccagatctctcctcctccac 37081008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 15920141 - 15920056
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataac---attacaagaaaatttgtttaa 135  Q
    ||||||||||||||||||||||| |||  || ||||||| |||||||||||||| | ||||||||   |||| ||||||||||||||||    
T  15920141 caacaataatataacaaatataataaa--aattcttatc-tttttaataacaccaacaatataacattattataagaaaatttgtttaa 15920056  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 11876417 - 11876484
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    ||||||||||||||||||||||| |||| || |||||| ||||||||| ||| | | ||||||||||||    
T  11876417 caacaataatataacaaatataataaaa-aattcttatattttttaatcacaacaacaatataacatta 11876484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 11891424 - 11891491
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    ||||||||||||||||||||||| |||| || |||||| ||||||||| ||| | | ||||||||||||    
T  11891424 caacaataatataacaaatataataaaa-aattcttatattttttaatcacaacaacaatataacatta 11891491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 7975937 - 7976008
Alignment:
Q  74 aaaataaatcttatcttttttaataacaccgaaaatataac---attacaagaaaatttgtttaaagatata 142  Q
    |||| ||||||||| ||||||||||||||| | ||||| ||   |||| |||||||||||||||||| ||||    
T  7975937 aaaaaaaatcttatattttttaataacaccaacaatatgacattattataagaaaatttgtttaaaggtata 7976008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 808 - 876
Target Start/End: Complemental strand, 37081218 - 37081149
Alignment:
Q  808 aaaacggtataggcaagaggagataccgttttttcctgttttag-cagtgggaagacaaatcacatgaaa 876  Q
    |||||||||| |||||||||  | ||||||||| |||||||||  | ||||||||| |||||||||||||    
T  37081218 aaaacggtatgggcaagaggcaaaaccgtttttgcctgttttaaacggtgggaagaaaaatcacatgaaa 37081149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 17583289 - 17583222
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacattac 119  Q
    ||||||||||||||||||||||| ||||  | |||||||||||||||||||||| | |||||||||||||    
T  17583289 caacaataatataacaaatataataaaa--attcttatcttttttaataacaccaacaatataacattac 17583222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 49428656 - 49428590
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    |||||||||||||||||||||||||||  || |||||||||||||||||||| | | ||||||||||||    
T  49428656 caacaataatataacaaatataagaaa--aattcttatcttttttaataacagcaacaatataacatta 49428590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 35368390 - 35368313
Alignment:
Q  58 atataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacattacaagaaaatttgtttaaag 137  Q
    ||||||||||||||  ||||  | |||||||||||||||||||| | | ||||||| |||| || |||||||||||||||    
T  35368390 atataacaaatatattaaaa--attcttatcttttttaataacatcaacaatataatattataaaaaaatttgtttaaag 35368313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 7982779 - 7982872
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta--caagaaaatttgtttaaagatata 142  Q
    |||||||||||| |||| |||||||||  || | |||||||||||||||||||| | ||||||| ||||   | |||||||||||||||| ||||    
T  7982779 caacaataatatcacaagtataagaaacaaagt-ttatcttttttaataacaccaacaatataatattatttatgaaaatttgtttaaaggtata 7982872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 36637230 - 36637183
Alignment:
Q  53 caataatataacaaatataagaaaataaatcttatcttttttaataacac 102  Q
    |||||||||||||||||||| ||||  | |||||||||||||||||||||    
T  36637230 caataatataacaaatataataaaa--attcttatcttttttaataacac 36637183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 20244329 - 20244392
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataaca 115  Q
    |||||||||| ||||||||||||  ||| |||| |||||||||||||||||||| | |||||||||    
T  20244329 caacaataatttaacaaatataaacaaa-aaat-ttatcttttttaataacaccaacaatataaca 20244392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 39948966 - 39948900
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    ||||||||||||||||||||||| |||  || |||||| |||||||| || ||| | ||||||||||||    
T  39948966 caacaataatataacaaatataataaa--aattcttattttttttaacaagaccaacaatataacatta 39948900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 11749 - 11683
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    |||||||||||||| |||||||| ||||  | |||||||||||||||||||||| | ||||||||||||    
T  11749 caacaataatataataaatataacaaaa--attcttatcttttttaataacaccaacaatataacatta 11683  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 27175245 - 27175183
Alignment:
Q  54 aataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    ||||||||||||||||||| ||||  | |||||||||||||||||||||| | ||||||||||||    
T  27175245 aataatataacaaatataacaaaa--attcttatcttttttaataacaccaacaatataacatta 27175183  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 42522707 - 42522773
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    ||||||||||||||||||||||| ||||  | |||||| ||||||||||||||| | ||||||||||||    
T  42522707 caacaataatataacaaatataataaaa--attcttatattttttaataacaccaacaatataacatta 42522773  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 17822169 - 17822235
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    ||||||||||||||||||||||| |||  || |||||||||||| ||||||||| | ||||||| ||||    
T  17822169 caacaataatataacaaatataacaaa--aattcttatctttttcaataacaccaacaatataatatta 17822235  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 9666240 - 9666174
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    ||||||||||||||||||| ||| ||||  | |||||||||||||||| ||| | | ||||||||||||    
T  9666240 caacaataatataacaaatgtaacaaaa--attcttatcttttttaattacaacaacaatataacatta 9666174  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 934 - 1010
Target Start/End: Original strand, 32953371 - 32953448
Alignment:
Q  934 ttacagctacgaaaaaataacacaa-tttccagatctttgtcatcacctcctctttatttacagctttgttactcctt 1010  Q
    |||||||| | |||||| ||||||| |||||||||| | ||||||||||||| |||||||||||||  ||||||||||    
T  32953371 ttacagctgcaaaaaaagaacacaaatttccagatcctagtcatcacctcctttttatttacagctccgttactcctt 32953448  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 4968689 - 4968775
Alignment:
Q  51 aacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataac---attacaagaaaatttgtttaaa 136  Q
    |||||||||||||||||||||| |||  || |||||||| | ||||||||||| | ||||||||   |||| |||||||||||||||||    
T  4968689 aacaataatataacaaatataacaaa--aattcttatctatcttaataacaccaacaatataacattattataagaaaatttgtttaaa 4968775  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 44717351 - 44717414
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataaca 115  Q
    |||||||||||||||||||| || ||||  | |||||||||||||||||||||| | |||||||||    
T  44717351 caacaataatataacaaataaaataaaa--attcttatcttttttaataacaccaacaatataaca 44717414  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 11067085 - 11067147
Alignment:
Q  54 aataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    |||||||||| |||||||| ||||  | |||||||||||||||||||||| | ||||||||||||    
T  11067085 aataatataaaaaatataacaaaa--attcttatcttttttaataacaccaacaatataacatta 11067147  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 13334770 - 13334822
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacacc 103  Q
    ||||||||||||||||||||||| |||| |||||||||||||| |||| |||||    
T  13334770 caacaataatataacaaatataacaaaa-aaatcttatcttttgtaatgacacc 13334822  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 38340185 - 38340123
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataac 114  Q
    ||||||||||||||||||| ||| ||||  | |||||||||||||||||||||| | ||||||||    
T  38340185 caacaataatataacaaatgtaataaaa--attcttatcttttttaataacaccaataatataac 38340123  T

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Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 36871 - 36788
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacattacaagaaaatttgtttaa 135  Q
    |||||| |||||||||||||||| ||||  | |||||||||||||||||||||| | ||||||  |||| | || |||||||||||    
T  36871 caacaacaatataacaaatataataaaa--attcttatcttttttaataacaccaacaatatactattatatgataatttgtttaa 36788  T

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Target: scaffold1017 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 2032 - 2098
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    ||||| ||||||||||||||||| ||||  | |||||||||||||||||||||  | ||||||||||||    
T  2032 caacattaatataacaaatataataaaa--attcttatcttttttaataacacaaacaatataacatta 2098  T

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Target: scaffold0003 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 226384 - 226469
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacat--tacaagaaaatttgtttaa 135  Q
    |||||||||| |||||||||||| ||||  | |||||| ||||||||||||||  | ||||||||||  || ||||||||||||||||    
T  226384 caacaataatgtaacaaatataataaaa--attcttattttttttaataacacgaacaatataacattatataagaaaatttgtttaa 226469  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 101
Target Start/End: Original strand, 40303013 - 40303062
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataaca 101  Q
    ||||||||||||||||||||||| |||  || ||||||||||||||||||||    
T  40303013 caacaataatataacaaatataataaa--aattcttatcttttttaataaca 40303062  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 11538454 - 11538363
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta-caagaaaatttgtttaaagatata 142  Q
    ||||||| ||||| ||||||||| ||||  | |||||||||||||||||||||| | ||||| ||||||  |  ||||||| ||||||||||||    
T  11538454 caacaatcatatagcaaatataacaaaa--attcttatcttttttaataacaccaacaatatgacattattataaaaatttatttaaagatata 11538363  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 44856889 - 44856940
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacacc 103  Q
    ||||||||||||||||||||||| |||  || |||||||||||| |||||||||    
T  44856889 caacaataatataacaaatataacaaa--aattcttatctttttaaataacacc 44856940  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 31054362 - 31054296
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    |||||||||| |||||||||||| | ||  | ||||||||||||||||| ||| || ||||||||||||    
T  31054362 caacaataatttaacaaatataatataa--attcttatcttttttaatatcactgacaatataacatta 31054296  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 15926223 - 15926286
Alignment:
Q  82 tcttatcttttttaataacaccgaaaatataacat---tacaag-aaaatttgtttaaagatat 141  Q
    |||||||||||||||||||||| | ||||||||||   || ||| |||||||||||||||||||    
T  15926223 tcttatcttttttaataacaccaataatataacattgctataagaaaaatttgtttaaagatat 15926286  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 38004483 - 38004417
Alignment:
Q  50 caacaataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    |||||||||||||| |||| ||| ||||  | |||||||||||||||||||| | | ||||||||||||    
T  38004483 caacaataatataataaatttaacaaaa--attcttatcttttttaataacaacaacaatataacatta 38004417  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 48171865 - 48171803
Alignment:
Q  54 aataatataacaaatataagaaaataaatcttatcttttttaataacaccgaaaatataacatta 118  Q
    ||||||||||||||||||| ||||  | |||||| ||||||||| ||||| | ||||||||||||    
T  48171865 aataatataacaaatataacaaaa--attcttatattttttaattacaccaataatataacatta 48171803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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