View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12056_low_10 (Length: 384)
Name: NF12056_low_10
Description: NF12056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12056_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 100 - 372
Target Start/End: Original strand, 9402260 - 9402532
Alignment:
| Q |
100 |
gtaaataccctttattcgaattatagaatctcaaccatgttttgtgttctctaatccgaacgttgttaaaattgaagtcaagaccatagaactatattga |
199 |
Q |
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| T |
9402260 |
gtaaataccctttattcgaattatagaatttcaaccatgttttgtgttctctaatccgaacgttgttacaattgaagtcaagactatagaactatattga |
9402359 |
T |
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| Q |
200 |
tgtttgtccgatgcttgtaaatatacgattcaaattataccatgcacgctaacacacctacgaagatatacaacccctcccttagccttttacataattg |
299 |
Q |
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| T |
9402360 |
tgtttgtctggtgcttgtaaatatacggttcaaattataccatgcaccctaacacacctacggcgatatgcaacccctccctaagccttttacataattg |
9402459 |
T |
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| Q |
300 |
cattcaaactaatacaagtcggacttccctcctccacttgaccactgtccattatagtatggcttggtctctg |
372 |
Q |
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| T |
9402460 |
cattcagactaatacaagtcggacttccctcctccatttgaccactgtccattatagcatggcttggtctctg |
9402532 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 262 - 333
Target Start/End: Complemental strand, 40975963 - 40975892
Alignment:
| Q |
262 |
aagatatacaacccctcccttagccttttacataattgcattcaaactaatacaagtcggacttccctcctc |
333 |
Q |
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|||||| |||| |||||||| ||||| | |||||||||| ||||| ||| |||||||||||||||||||| |
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| T |
40975963 |
aagataaacaatccctccctaagcctcatgtataattgcatgcaaacaaatccaagtcggacttccctcctc |
40975892 |
T |
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