View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12056_low_11 (Length: 368)
Name: NF12056_low_11
Description: NF12056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12056_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 13868539 - 13868881
Alignment:
| Q |
19 |
tcatcaatctcatcaggtacccttttcttcttcattccatcaattcttcactacccagattctatttcctcttttttactacctttgaattgggtcaaca |
118 |
Q |
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| T |
13868539 |
tcatcaatctcatcaggtacccttttcttcttcattccatcaattcttcactacccagattctatttcctcttttttactacctttgaattgggtcaaca |
13868638 |
T |
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| Q |
119 |
caaagttgaatttcaaacgacttcaattgagatcttattcaacaatattgaaagttgagaattcattagttggttaggtagatatcttcttttgacttga |
218 |
Q |
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| T |
13868639 |
caaagttgaatttcaaacgacttcaattgagatcttattcaacaatattcaaggttgagaattcattagttggttaggtagatatcttcttttgacttga |
13868738 |
T |
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| Q |
219 |
ctgatttgacctatagatacagattcatcaactatttctgtactctgttagttaaaatagcatataacctctgagaccctttatcttttttagtatatct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13868739 |
ctgatttgacctatagatacagattcatcaactatttctgtactctgttagttaaaattgcatataacctctgagaccctttatcttttttagtatatct |
13868838 |
T |
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| Q |
319 |
gttaaagtctcgaagacgtagacacaattgatcgaactctgtg |
361 |
Q |
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| T |
13868839 |
gtaaaagtctcgaagacgtagacacaattgatcgaactctgtg |
13868881 |
T |
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