View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12056_low_14 (Length: 347)
Name: NF12056_low_14
Description: NF12056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12056_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-172; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 9 - 333
Target Start/End: Original strand, 47476712 - 47477036
Alignment:
| Q |
9 |
agcagagagcaatcggttccactgaataactcgtaattagtgaaagttgttcgaattattatttaatgaacaaacaatcatgagtgttgtaatcttatca |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47476712 |
agcaaagagcaatcggttccactgaataactcgtaattagtgaaagttgttcgaattattatttaatgaacaaacaatcatgagtgttgtaatcttatca |
47476811 |
T |
|
| Q |
109 |
tgtgaacttggagaggaactcaaactaacctgcagagaggaactatctcgttcccaatgtcgcgagtccagagagaccactctatttgtaaagctgtgat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47476812 |
tgtgaacttggagaggaactcaaactaacctgcagagaggaactatctcgttctcaatgtcgcgagtccagagagaccactctatttgtaaagctgtgat |
47476911 |
T |
|
| Q |
209 |
aggatgaacaacatgtgctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttccctcttccaccagtttcttaagttcacct |
308 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47476912 |
aggatgaacagcatgtgctctccttattgtatcggggctggcttcagatagtccaatatatttaacttttccctcttccaccagtttcttaagttcacct |
47477011 |
T |
|
| Q |
309 |
acctataacacaacaaacttgttaa |
333 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
47477012 |
acctatagcacaacaaacttgttaa |
47477036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 111 - 333
Target Start/End: Original strand, 47473516 - 47473738
Alignment:
| Q |
111 |
tgaacttggagaggaactcaaactaacctgcagagaggaactatctcgttcccaatgtcgcgagtccagagagaccactctatttgtaaagctgtgatag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| ||||||||||||||||||| ||| ||||| | |
|
|
| T |
47473516 |
tgaacttggagaggaactcaaactaacctgcagagaggaactatctcctcctcaatgtcgcgagtccaaagagaccactctatttgtacagcagtgatgg |
47473615 |
T |
|
| Q |
211 |
gatgaacaacatgtgctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttccctcttccaccagtttcttaagttcacctac |
310 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47473616 |
gatgaacagcatgcgctctccttattgtatcagggctggcttcagatagtccaatatacttaacttttccctcttccaccagtttcttaagttcacctac |
47473715 |
T |
|
| Q |
311 |
ctataacacaacaaacttgttaa |
333 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
47473716 |
ctataacacaacaaacttgttaa |
47473738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 112 - 333
Target Start/End: Original strand, 47486232 - 47486453
Alignment:
| Q |
112 |
gaacttggagaggaactcaaactaacctgcagagaggaactatctcgttcccaatgtcgcgagtccagagagaccactctatttgtaaagctgtgatagg |
211 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| || ||||||||||| | | ||||||| |||||||| ||||||||||| ||||||| ||||||||| || |
|
|
| T |
47486232 |
gaacttggacaggaactcaaactaaccggcatagtggaactatctcatcctcaatgtcacgagtccaaagagaccactccatttgtacagctgtgatggg |
47486331 |
T |
|
| Q |
212 |
atgaacaacatgtgctctccttattgtatcggggctggcttcagatagtccaatatacttaacttttccctcttccaccagtttcttaagttcacctacc |
311 |
Q |
| |
|
||||| || ||||||||||||||||| ||||| ||||||||||| || |||||||| |||||||| |||||||||| ||| |||||||||||||| |
|
|
| T |
47486332 |
atgaatggtgtgcgctctccttattgtatctgggctagcttcagatagccctatatacttcacttttccttcttccaccaacttcataagttcacctacc |
47486431 |
T |
|
| Q |
312 |
tataacacaacaaacttgttaa |
333 |
Q |
| |
|
| ||| | || ||||||||||| |
|
|
| T |
47486432 |
tgtaatagaagaaacttgttaa |
47486453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 301
Target Start/End: Original strand, 47469244 - 47469374
Alignment:
| Q |
171 |
cgagtccagagagaccactctatttgtaaagctgtgataggatgaacaacatgtgctctccttattgtatcggggctggcttcagatagtccaatatact |
270 |
Q |
| |
|
|||||||| |||||||| || ||||| | ||| || || ||||||||| ||||||| || || |||||||| | || || ||||||| ||| || |||| |
|
|
| T |
47469244 |
cgagtccaaagagaccattccatttgaacagcagtaatgggatgaacagcatgtgcccttctgattgtatcagtactagcctcagataatcctatgtact |
47469343 |
T |
|
| Q |
271 |
taacttttccctcttccaccagtttcttaag |
301 |
Q |
| |
|
||| ||||||||||| |||| |||||||| |
|
|
| T |
47469344 |
taatctttccctcttcaaccaacttcttaag |
47469374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University