View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12056_low_15 (Length: 343)
Name: NF12056_low_15
Description: NF12056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12056_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 2140522 - 2140194
Alignment:
| Q |
1 |
agaaaatgacataattcaatgtaactatacatatcaatatcgtgtcggtgtcggacatgatagtgttacatacccaacactaggactctcataatccgat |
100 |
Q |
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| T |
2140522 |
agaaaatgacataattcaatgtaactatacatatcaatatcgtgttggtgtcggacatgatagtgttacatacccaacactaggactctcataatccgaa |
2140423 |
T |
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| Q |
101 |
gagtgtctgtgtttcatagcatctcactggcataatgaaagnnnnnnnnn-ttgaaaaggtaaaatatttttagttcttaaaacttaattacccttccat |
199 |
Q |
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| T |
2140422 |
gagtgtttctgtttcatagcatctcactggcataatgaaagaaaaaaaaaattgaaaaggtaaaatatttttagttcttaaaacttaattacccttccat |
2140323 |
T |
|
| Q |
200 |
gatttgactattggagttggcttggtctttgaagatggtggtggagctggtgaagaagctggtgttttggctggttgagaaggtggaacggttattattg |
299 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2140322 |
gatttgactattggagttggcttggtctttgaagttggtggtggagctggtgaagaagctggtgttttggctggttgagaaggtggaacggttattattg |
2140223 |
T |
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| Q |
300 |
gaattgcaacagtaggagctgaaggtttt |
328 |
Q |
| |
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| T |
2140222 |
gaattacaacagtaggagctgaaggtttt |
2140194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 2125263 - 2125235
Alignment:
| Q |
188 |
ttacccttccatgatttgactattggagt |
216 |
Q |
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| T |
2125263 |
ttacccttccatgatttgactattggagt |
2125235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 35222508 - 35222556
Alignment:
| Q |
3 |
aaaatgacataattcaatgtaactatacatatcaatatcgtgtcggtgt |
51 |
Q |
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| T |
35222508 |
aaaatcacataattcaatctaactatacatatcgctatcgtgtcggtgt |
35222556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 28745524 - 28745572
Alignment:
| Q |
9 |
acataattcaatgtaactatacatatcaatatcgtgtcggtgtcggaca |
57 |
Q |
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| T |
28745524 |
acataattcaatgtaactacaaatgtcgatgtcgtgtcggtgtcggaca |
28745572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 30563427 - 30563455
Alignment:
| Q |
1 |
agaaaatgacataattcaatgtaactata |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
30563427 |
agaaaatgacataattcaatgtaactata |
30563455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50233419 - 50233463
Alignment:
| Q |
1 |
agaaaatgacataattcaatgtaactatacatatcaatatcgtgt |
45 |
Q |
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|||||||||||||||||||||||| ||| |||||| |||||||| |
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| T |
50233419 |
agaaaatgacataattcaatgtaatcataaatatcagtatcgtgt |
50233463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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