View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12056_low_18 (Length: 308)

Name: NF12056_low_18
Description: NF12056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12056_low_18
NF12056_low_18
[»] chr6 (16 HSPs)
chr6 (7-290)||(5421835-5422118)
chr6 (7-274)||(5070606-5070871)
chr6 (9-76)||(5092784-5092851)
chr6 (11-76)||(5160691-5160756)
chr6 (7-75)||(5149891-5149959)
chr6 (7-85)||(5429436-5429514)
chr6 (9-85)||(5358325-5358401)
chr6 (7-95)||(5366333-5366421)
chr6 (16-83)||(5185054-5185121)
chr6 (18-76)||(5077283-5077341)
chr6 (7-85)||(5107969-5108047)
chr6 (16-70)||(5360769-5360823)
chr6 (18-84)||(5443942-5444008)
chr6 (16-70)||(5394196-5394250)
chr6 (18-84)||(5272848-5272914)
chr6 (11-75)||(5340401-5340465)
[»] chr7 (1 HSPs)
chr7 (16-83)||(34719961-34720028)
[»] chr4 (4 HSPs)
chr4 (14-73)||(4332495-4332554)
chr4 (7-70)||(4129744-4129808)
chr4 (18-73)||(4356598-4356653)
chr4 (7-77)||(25566886-25566956)
[»] chr5 (1 HSPs)
chr5 (39-81)||(20809424-20809466)
[»] scaffold0294 (1 HSPs)
scaffold0294 (9-70)||(6639-6700)


Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 5422118 - 5421835
Alignment:
Q  7 gagaagcagagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcatagatccttgtttcgtttcgacttttgccaaa 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5422118 gagaagcatagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcatggatccttgtttcgtttcgacttttgccaaa 5422019  T
Q  107 attaagagatttgaagcgaaacactgctcttattactatacttgcttttctccatttagaaattgctttactggaggaagacatgaatgaatggatgaat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5422018 attaagagatttgaagcgaaacactgctcttattactatacttgcttttctccatttagaaattgctttactggaggaagacatgaatgaatggatgaat 5421919  T
Q  207 tgagatgaaagagaataatgaactaactaattgttgaaacagataaattattactaaatagtgaagtgattgaagtgtgtggat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5421918 tgagatgaaagagaataatgaactaactaattgttgaaacagataaattattactaaatagtgaagtgattgaagtgtgtggat 5421835  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 7 - 274
Target Start/End: Original strand, 5070606 - 5070871
Alignment:
Q  7 gagaagcagagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcatagatccttgtttcgtttcgacttttgccaaa 106  Q
    |||||||| ||||||||||||||||||| |  ||||| ||||||||||| ||||||||||||||||||| |||||||| ||| ||||      | ||| |    
T  5070606 gagaagcatagagatgtgaagtgaatgaagagcgagtgtcctctcctctgaaacttaagaacacatcatggatccttgattcatttc------taccata 5070699  T
Q  107 attaagagatttgaagcgaaacactgctcttattactatacttgcttttctccatttagaaattgctttactggaggaagac----atgaatgaatggat 202  Q
    |   ||||||||||||  ||||||||||||| ||||||||||  ||||||||||||||||  | |||| |||| ||||||||    ||| ||| |||| |    
T  5070700 aaggagagatttgaagttaaacactgctcttgttactatactaacttttctccatttagatctcgcttcactgtaggaagacatatatggatgcatggtt 5070799  T
Q  203 gaattgagatgaaagagaa-taatgaactaactaattgttgaaacagataaattattactaaatagtgaagtg 274  Q
    ||  | ||| |||||| || ||||||||| ||||||||||||| |||| |||| ||||||||| ||| |||||    
T  5070800 gagatcagaagaaagataattaatgaactgactaattgttgaatcaga-aaatcattactaaacagtcaagtg 5070871  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 5092851 - 5092784
Alignment:
Q  9 gaagcagagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcata 76  Q
    |||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  5092851 gaagcatagagatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcata 5092784  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 5160691 - 5160756
Alignment:
Q  11 agcagagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcata 76  Q
    |||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||    
T  5160691 agcatagagatgtgaagtgaatgatgcacgagtatcttttcctctaaaacttaagaacacttcata 5160756  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 5149891 - 5149959
Alignment:
Q  7 gagaagcagagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcat 75  Q
    |||||||| |||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||    
T  5149891 gagaagcatagagatgtgaagtgaatgatgcgcgcgtatcttcccctctaaaacttaagaacacttcat 5149959  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 5429514 - 5429436
Alignment:
Q  7 gagaagcagagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcatagatccttgt 85  Q
    |||||||| |||||||||||||||| ||| | |||||||| || ||||||||||||| |||||| |||| |||||||||    
T  5429514 gagaagcatagagatgtgaagtgaacgatcctcgagtatcttcgcctctaaaacttaggaacacgtcatggatccttgt 5429436  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 5358325 - 5358401
Alignment:
Q  9 gaagcagagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcatagatccttgt 85  Q
    |||||| ||||||||||||||||  | ||| |||| ||||||||||| ||||| ||||||||||||| |||||||||    
T  5358325 gaagcatagagatgtgaagtgaagcaagcatgagtgtcctctcctctgaaactcaagaacacatcatggatccttgt 5358401  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 5366421 - 5366333
Alignment:
Q  7 gagaagcagagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcatagatccttgtttcgtttcga 95  Q
    |||||||| ||||||| |||||||| |||||||| || |||| ||| |||||||||| |||||||||||  |||| ||| |||||||||    
T  5366421 gagaagcatagagatgcgaagtgaaagatgcacgcgtctcctttccactaaaacttaggaacacatcatgcatccatgtgtcgtttcga 5366333  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 5185054 - 5185121
Alignment:
Q  16 agagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcatagatcctt 83  Q
    ||||||||||||| || || | ||||||||| || ||||||||||||||||||||||||| |||||||    
T  5185054 agagatgtgaagtaaaggaagaacgagtatcttcccctctaaaacttaagaacacatcatggatcctt 5185121  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 5077283 - 5077341
Alignment:
Q  18 agatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcata 76  Q
    |||||||||||||| ||| ||||||| ||| ||||||| ||||||||||||||||||||    
T  5077283 agatgtgaagtgaaagattcacgagtgtccactcctctgaaacttaagaacacatcata 5077341  T

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Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 5107969 - 5108047
Alignment:
Q  7 gagaagcagagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcatagatccttgt 85  Q
    |||||||| |||||||||||||||| || ||||||||||| |  ||||| ||||||| |||||| |||| |||||||||    
T  5107969 gagaagcatagagatgtgaagtgaaggaagcacgagtatctttgcctctgaaacttaggaacacgtcatggatccttgt 5108047  T

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Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 5360823 - 5360769
Alignment:
Q  16 agagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacac 70  Q
    |||||||||||||||| || | ||||||||||||||| |||||||||||||||||    
T  5360823 agagatgtgaagtgaaggaagaacgagtatcctctcccctaaaacttaagaacac 5360769  T

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Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 5444008 - 5443942
Alignment:
Q  18 agatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcatagatccttg 84  Q
    |||||||||||||| || ||||||||||| |  |||||||||||||||||||| |||| ||||||||    
T  5444008 agatgtgaagtgaaggaagcacgagtatctttccctctaaaacttaagaacacgtcatggatccttg 5443942  T

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Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 5394250 - 5394196
Alignment:
Q  16 agagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacac 70  Q
    ||||||||||||||||||| | |||||| ||||| ||||| ||||||||||||||    
T  5394250 agagatgtgaagtgaatgaagaacgagtgtcctcccctctgaaacttaagaacac 5394196  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 5272914 - 5272848
Alignment:
Q  18 agatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcatagatccttg 84  Q
    ||||||||||||||||| |  || || ||||| ||||| |||||||||||||| |||||| ||||||    
T  5272914 agatgtgaagtgaatgaagtgcgcgtgtcctcgcctctgaaacttaagaacacttcatagctccttg 5272848  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 5340465 - 5340401
Alignment:
Q  11 agcagagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcat 75  Q
    |||| |||||||||||||||| ||| ||||||| ||||  ||||||||||| || ||||| ||||    
T  5340465 agcatagagatgtgaagtgaaggatacacgagtgtccttccctctaaaactcaaaaacacttcat 5340401  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 34719961 - 34720028
Alignment:
Q  16 agagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcatagatcctt 83  Q
    ||||||||||| |||||  |||||||||||| || ||||| ||||| |||||||||||||||||||||    
T  34719961 agagatgtgaaatgaatcttgcacgagtatcttcccctctgaaactcaagaacacatcatagatcctt 34720028  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 4332554 - 4332495
Alignment:
Q  14 agagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatc 73  Q
    |||||||||||||||||||||||| ||||| || || ||||||||||| |||||||||||    
T  4332554 agagagatgtgaagtgaatgatgcgcgagtgtcttcgcctctaaaactcaagaacacatc 4332495  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 4129744 - 4129808
Alignment:
Q  7 gagaagcagagagatgtgaagtgaatgatgcac-gagtatcctctcctctaaaacttaagaacac 70  Q
    |||||| || |||||||||| |||||||||||| ||||||| || ||||| ||||||||||||||    
T  4129744 gagaagaagtgagatgtgaaatgaatgatgcactgagtatcatcacctctgaaacttaagaacac 4129808  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 4356653 - 4356598
Alignment:
Q  18 agatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatc 73  Q
    |||||||||||||||||||| | ||| || |||||||||||||| || ||||||||    
T  4356653 agatgtgaagtgaatgatgctctagtgtcttctcctctaaaactcaaaaacacatc 4356598  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 25566956 - 25566886
Alignment:
Q  7 gagaagcagagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacacatcatag 77  Q
    ||||||||  ||||||||  ||||| || |||||||| ||||| |||||| ||||||||||||| ||||||    
T  25566956 gagaagcattgagatgtgcggtgaaagaagcacgagtgtcctcccctctataacttaagaacacttcatag 25566886  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 20809466 - 20809424
Alignment:
Q  39 cgagtatcctctcctctaaaacttaagaacacatcatagatcc 81  Q
    ||||||||||| ||||||||||||| |||||| ||||||||||    
T  20809466 cgagtatcctcccctctaaaacttatgaacacgtcatagatcc 20809424  T

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Target: scaffold0294 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 6639 - 6700
Alignment:
Q  9 gaagcagagagatgtgaagtgaatgatgcacgagtatcctctcctctaaaacttaagaacac 70  Q
    |||||| |||||||||||||||||||  |  ||||||| |  ||||||||||||||||||||    
T  6639 gaagcatagagatgtgaagtgaatgaaacgtgagtatcgttccctctaaaacttaagaacac 6700  T

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