View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12056_low_19 (Length: 292)

Name: NF12056_low_19
Description: NF12056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12056_low_19
NF12056_low_19
[»] chr4 (24 HSPs)
chr4 (24-282)||(34128106-34128364)
chr4 (26-161)||(34279480-34279616)
chr4 (70-159)||(3409577-3409666)
chr4 (69-161)||(54859144-54859237)
chr4 (69-161)||(18670975-18671067)
chr4 (66-161)||(30019815-30019909)
chr4 (74-154)||(35091065-35091145)
chr4 (74-154)||(35096178-35096258)
chr4 (65-131)||(22118846-22118912)
chr4 (70-154)||(14643719-14643803)
chr4 (65-154)||(32429267-32429356)
chr4 (70-134)||(3424704-3424768)
chr4 (24-122)||(47071485-47071583)
chr4 (178-267)||(34279253-34279340)
chr4 (183-267)||(35091237-35091319)
chr4 (183-266)||(32429034-32429115)
chr4 (107-154)||(34602012-34602059)
chr4 (183-266)||(35096350-35096431)
chr4 (169-223)||(34601886-34601940)
chr4 (202-267)||(3424113-3424176)
chr4 (68-113)||(25618315-25618360)
chr4 (142-222)||(47071668-47071752)
chr4 (215-268)||(47071765-47071816)
chr4 (215-267)||(22119081-22119131)
[»] chr5 (20 HSPs)
chr5 (65-159)||(35368870-35368964)
chr5 (74-159)||(13556273-13556358)
chr5 (74-154)||(9872398-9872478)
chr5 (74-154)||(9877513-9877593)
chr5 (74-154)||(39909108-39909188)
chr5 (69-161)||(43540749-43540839)
chr5 (74-154)||(39903995-39904075)
chr5 (65-159)||(2023095-2023188)
chr5 (172-266)||(13556105-13556197)
chr5 (92-159)||(43379556-43379618)
chr5 (183-267)||(9877339-9877421)
chr5 (183-267)||(39909280-39909362)
chr5 (183-266)||(9872225-9872306)
chr5 (76-134)||(4555772-4555830)
chr5 (215-267)||(4555969-4556019)
chr5 (183-267)||(39904167-39904249)
chr5 (70-161)||(43402100-43402191)
chr5 (217-267)||(2024420-2024468)
chr5 (184-261)||(24091794-24091869)
chr5 (172-228)||(35368679-35368735)
[»] chr8 (17 HSPs)
chr8 (24-161)||(18608617-18608755)
chr8 (74-159)||(43956819-43956904)
chr8 (74-154)||(14314885-14314965)
chr8 (74-154)||(14318589-14318669)
chr8 (74-155)||(18494150-18494230)
chr8 (74-155)||(34108381-34108462)
chr8 (74-154)||(26986963-26987043)
chr8 (69-161)||(1781963-1782055)
chr8 (74-154)||(26981849-26981929)
chr8 (82-161)||(25953142-25953221)
chr8 (172-251)||(43956665-43956743)
chr8 (183-267)||(14318415-14318497)
chr8 (183-267)||(26986789-26986871)
chr8 (183-267)||(34108553-34108635)
chr8 (183-266)||(26981676-26981757)
chr8 (74-159)||(10340936-10341021)
chr8 (183-266)||(18493978-18494059)
[»] chr6 (10 HSPs)
chr6 (65-169)||(24509841-24509946)
chr6 (65-161)||(21936653-21936749)
chr6 (65-161)||(20752105-20752201)
chr6 (74-154)||(21275923-21276003)
chr6 (70-161)||(24508827-24508918)
chr6 (65-169)||(21937707-21937812)
chr6 (183-267)||(21276095-21276177)
chr6 (191-267)||(20751880-20751953)
chr6 (215-266)||(21936408-21936457)
chr6 (169-251)||(11183002-11183083)
[»] chr3 (41 HSPs)
chr3 (74-159)||(49784636-49784721)
chr3 (74-155)||(5457984-5458065)
chr3 (74-155)||(5481461-5481542)
chr3 (74-154)||(4049958-4050038)
chr3 (74-154)||(10584832-10584912)
chr3 (74-155)||(8464900-8464981)
chr3 (74-154)||(1302218-1302298)
chr3 (74-154)||(4055092-4055172)
chr3 (74-154)||(6852926-6853006)
chr3 (74-154)||(6858029-6858109)
chr3 (74-154)||(10591269-10591349)
chr3 (74-154)||(10672912-10672992)
chr3 (24-159)||(29827501-29827638)
chr3 (74-154)||(33702573-33702653)
chr3 (83-154)||(8458471-8458542)
chr3 (69-134)||(18024174-18024239)
chr3 (74-154)||(31076376-31076456)
chr3 (74-154)||(31081481-31081561)
chr3 (68-134)||(20891171-20891237)
chr3 (74-130)||(33703450-33703506)
chr3 (186-264)||(20891474-20891550)
chr3 (216-268)||(269532-269582)
chr3 (183-267)||(4050130-4050212)
chr3 (183-267)||(4055264-4055346)
chr3 (183-267)||(5481288-5481370)
chr3 (183-267)||(6857855-6857937)
chr3 (183-267)||(10672738-10672820)
chr3 (183-267)||(10677851-10677933)
chr3 (183-266)||(1302045-1302126)
chr3 (183-266)||(6852753-6852834)
chr3 (183-266)||(8465072-8465153)
chr3 (183-266)||(10584659-10584740)
chr3 (74-154)||(10678025-10678107)
chr3 (183-267)||(8458634-8458716)
chr3 (183-267)||(10591095-10591177)
chr3 (215-267)||(29827836-29827886)
chr3 (183-267)||(31081307-31081389)
chr3 (215-266)||(33702400-33702449)
chr3 (172-222)||(29827773-29827823)
chr3 (217-266)||(31076201-31076248)
chr3 (215-267)||(18023913-18023963)
[»] chr7 (18 HSPs)
chr7 (24-157)||(4181374-4181509)
chr7 (69-161)||(5440267-5440359)
chr7 (69-161)||(5449277-5449369)
chr7 (72-204)||(37459783-37459919)
chr7 (74-155)||(12851826-12851907)
chr7 (74-154)||(12856939-12857019)
chr7 (74-154)||(26051171-26051251)
chr7 (74-154)||(26056284-26056364)
chr7 (74-154)||(26060530-26060610)
chr7 (74-154)||(26065643-26065723)
chr7 (183-268)||(12857111-12857194)
chr7 (25-119)||(35352330-35352427)
chr7 (183-267)||(26051343-26051425)
chr7 (183-267)||(26056456-26056538)
chr7 (183-267)||(26060702-26060784)
chr7 (183-267)||(26065815-26065897)
chr7 (186-267)||(12852001-12852080)
chr7 (218-266)||(4181276-4181322)
[»] chr1 (21 HSPs)
chr1 (68-161)||(10186548-10186641)
chr1 (65-158)||(19310954-19311047)
chr1 (74-154)||(28574447-28574527)
chr1 (74-154)||(28598459-28598539)
chr1 (68-161)||(44523998-44524093)
chr1 (37-161)||(16051296-16051422)
chr1 (82-161)||(13654467-13654546)
chr1 (65-159)||(43358884-43358978)
chr1 (74-155)||(3468218-3468299)
chr1 (74-161)||(21431648-21431736)
chr1 (70-161)||(35653220-35653311)
chr1 (211-266)||(3468418-3468471)
chr1 (69-140)||(17414556-17414627)
chr1 (183-266)||(43359124-43359205)
chr1 (65-169)||(1187952-1188057)
chr1 (183-267)||(28574619-28574701)
chr1 (78-134)||(3701492-3701548)
chr1 (183-267)||(28598631-28598713)
chr1 (24-59)||(21431764-21431799)
chr1 (169-222)||(19311121-19311174)
chr1 (215-251)||(10186063-10186098)
[»] scaffold0223 (2 HSPs)
scaffold0223 (74-154)||(1993-2073)
scaffold0223 (183-268)||(1818-1901)
[»] chr2 (16 HSPs)
chr2 (74-154)||(14917356-14917436)
chr2 (68-156)||(20892321-20892409)
chr2 (65-161)||(42780314-42780410)
chr2 (74-155)||(45120537-45120618)
chr2 (74-154)||(17720500-17720580)
chr2 (74-161)||(30283417-30283504)
chr2 (74-162)||(716404-716492)
chr2 (183-266)||(14917183-14917264)
chr2 (107-158)||(16286004-16286055)
chr2 (215-269)||(17719997-17720049)
chr2 (183-267)||(17720326-17720408)
chr2 (186-266)||(45120712-45120790)
chr2 (215-266)||(30283251-30283300)
chr2 (183-266)||(39178921-39179002)
chr2 (24-62)||(16284515-16284553)
chr2 (217-267)||(42780549-42780597)
[»] scaffold0006 (1 HSPs)
scaffold0006 (82-161)||(144228-144307)
[»] scaffold0005 (1 HSPs)
scaffold0005 (70-154)||(173489-173573)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 24 - 282
Target Start/End: Complemental strand, 34128364 - 34128106
Alignment:
Q  24 ggagaattatgatgttaatgcaacaaaattcttgtttcttagtgtcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacatt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||    
T  34128364 ggagaattatgatgttaatgcaacaaaattcttgtttcttagtgtcaaattaatggccaaatgtcaagcatttatagtgcattatatgacccttcacatt 34128265  T
Q  124 agagaaaacactcatttaacttgaatcaatgttat-ggtcattaaaccctttgccaaagattccaatatatatgaaagattctcacggagaattacaact 222  Q
    ||||||||||||||||| ||||||||||||||||| | ||||||| || |||||||||| |||||||||||||||||||||||||| |||| ||||||||    
T  34128264 agagaaaacactcatttgacttgaatcaatgttatagttcattaagccttttgccaaaggttccaatatatatgaaagattctcacagagagttacaact 34128165  T
Q  223 tttgattctaaaagtgattccattatttttggaaatcaccaacaaaccaatttccctttg 282  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  34128164 tttggttctaaaa-tgattccataatttttggaaatcaccaacaaaccaatttccctttg 34128106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 26 - 161
Target Start/End: Complemental strand, 34279616 - 34279480
Alignment:
Q  26 agaattatgatgttaatgcaacaaaattcttgtt-tcttagtgtcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacatta 124  Q
    ||||||||| |||||||| |||||||||| |||| | |  ||||||||||||||| | |||||| |||||||||||||||| |||||||||||||||| |    
T  34279616 agaattatgttgttaatgtaacaaaattcatgttctgtgtgtgtcaaattaatgctcaaatgtcgagcatttatagtgcattatatgacccttcacatga 34279517  T
Q  125 gagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    |||||||||||||||| ||||||||||||||||||||    
T  34279516 gagaaaacactcatttgacttgaatcaatgttatggt 34279480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 3409666 - 3409577
Alignment:
Q  70 aaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatg 159  Q
    |||||||||||| ||||||||  ||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||| ||||    
T  3409666 aaattaatgcccaaatgtcaaatatttatagtgcattatatgacccttcacatgagagaaaacactcctttgacttgaatcaatgctatg 3409577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 54859237 - 54859144
Alignment:
Q  69 caaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaaca-ctcatttaacttgaatcaatgttatggt 161  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||||||||||||| |||||||||| | | ||| ||||||||||||||||||||    
T  54859237 caaattaatgcccaaatatcaagcatttatagtgcattatatgacccttcacatgagagaaaacaccccctttgacttgaatcaatgttatggt 54859144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 18670975 - 18671067
Alignment:
Q  69 caaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    ||||||||| ||| |||| |||||||||||||| ||| |||||||||||||||| ||||||| ||| ||||| ||||||||||||| ||||||    
T  18670975 caaattaattcccaaatgccaagcatttatagtccattatatgacccttcacatgagagaaagcacccatttgacttgaatcaatgctatggt 18671067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 161
Target Start/End: Complemental strand, 30019909 - 30019815
Alignment:
Q  66 tgtcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    ||||||| |||||||| |||| ||| |||||||||||||| |||||||||||||||| ||||||| ||| ||||| ||||||||| ||||||||||    
T  30019909 tgtcaaactaatgcccaaatgccaaacatttatagtgcattatatgacccttcacatgagagaaagcacccatttgacttgaatc-atgttatggt 30019815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 35091065 - 35091145
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  35091065 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 35091145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 35096178 - 35096258
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  35096178 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 35096258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 22118846 - 22118912
Alignment:
Q  65 gtgtcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaa 131  Q
    ||||||||||||||||| |||||||||||||||||||  || |||||||||||||||| ||||||||    
T  22118846 gtgtcaaattaatgcccaaatgtcaagcatttatagtatattatatgacccttcacatgagagaaaa 22118912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 14643803 - 14643719
Alignment:
Q  70 aaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||||| | ||| |||| ||||||||| |||| |||||||||||||||| | ||||||||| ||||| |||||||||||||    
T  14643803 aaattaatgcacaaatatcaaacatttatagcgcattatatgacccttcacatgatagaaaacacccatttgacttgaatcaatg 14643719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 32429356 - 32429267
Alignment:
Q  65 gtgtcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    ||||| || |||||| | |||| |||||||||||||||||| ||||||| ||||| || ||||||||||| | ||| |||||||||||||    
T  32429356 gtgtccaactaatgcacaaatgccaagcatttatagtgcattatatgactcttcaaatgagagaaaacacccctttgacttgaatcaatg 32429267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 3424768 - 3424704
Alignment:
Q  70 aaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacac 134  Q
    |||||||||||| ||| ||||  ||||||||||||| |||||||||||||||| |||||||||||    
T  3424768 aaattaatgcccaaatatcaaatatttatagtgcattatatgacccttcacatgagagaaaacac 3424704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 122
Target Start/End: Original strand, 47071485 - 47071583
Alignment:
Q  24 ggagaattatgatgttaatgcaacaaaattcttgtttcttagtgt-caaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacat 122  Q
    ||||||||||| |||||||| |||||||||  || |||||  ||| ||||||||||||| ||||| || |||||||||| ||| ||||||||||||||||    
T  47071485 ggagaattatgttgttaatgtaacaaaatttctg-ttcttgttgtccaaattaatgcccaaatgttaaacatttatagtacattatatgacccttcacat 47071583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 34279340 - 34279253
Alignment:
Q  178 aaagattccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    |||||||| ||| |||||||| ||||| || | ||||||  |||||||| ||||||| |||||||||||||||| |||||||||||||||    
T  34279340 aaagattctaatgtatatgaatgattcccatgaagaattgaaacttttggttctaaa-gtgattccattatttt-ggaaatcaccaacaa 34279253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 35091237 - 35091319
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  35091237 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 35091319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 32429115 - 32429034
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    ||||||| |||||||| ||||  || | ||| |||||||| ||| ||||||| |||||||||||| ||||||||||||||||||    
T  32429115 ttccaatgtatatgaatgatttccatgaagagttacaactcttggttctaaa-gtgattccatta-ttttggaaatcaccaaca 32429034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 34602059 - 34602012
Alignment:
Q  107 atatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||| ||| ||||||||||||| |||||||||||||    
T  34602059 atatgaccattcacatgagaaaaaacactcatttgacttgaatcaatg 34602012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 35096350 - 35096431
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||  ||||||| |||||||||||| ||||||||||||||||||    
T  35096350 ttccaatgtatatgaatggttcccatgaagagttacaactttttgttctaaa-gtgattccatta-ttttggaaatcaccaaca 35096431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 34601940 - 34601886
Alignment:
Q  169 ccctttgccaaagattccaatatatatgaaagattctcacggagaattacaactt 223  Q
    ||||||||||||||||| ||| |||||||| |||||||| | ||| |||||||||    
T  34601940 ccctttgccaaagattcaaatgtatatgaatgattctcatgaagagttacaactt 34601886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 267
Target Start/End: Complemental strand, 3424176 - 3424113
Alignment:
Q  202 ttctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    |||||| | ||| |||||||||||| ||||||| |||||||||||| ||||||||||||| |||||    
T  3424176 ttctcatgaagagttacaacttttggttctaaa-gtgattccatta-ttttggaaatcacaaacaa 3424113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 25618360 - 25618315
Alignment:
Q  68 tcaaattaatgccctaatgtcaagcatttatagtgcatgatatgac 113  Q
    ||||| |||||||| |||| |||||||||||||||||| |||||||    
T  25618360 tcaaactaatgcccaaatgccaagcatttatagtgcattatatgac 25618315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 47071668 - 47071752
Alignment:
Q  142 acttgaatcaatgttatgg-tcattaa--accc-tttgccaaagattccaatatatatgaaagattctcacggagaattacaact 222  Q
    ||||||||||||||||||| |||||||  |||| |||||||||| ||||||| |||||||| |||| ||| | ||| ||||||||    
T  47071668 acttgaatcaatgttatggttcattaagcacccatttgccaaaggttccaatgtatatgaatgattttcatgaagagttacaact 47071752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 47071765 - 47071816
Alignment:
Q  215 ttacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaaa 268  Q
    |||||||||||| || |||| |||||||||||||||| ||||||||||||||||    
T  47071765 ttacaacttttggttgtaaa-gtgattccattatttt-ggaaatcaccaacaaa 47071816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 22119081 - 22119131
Alignment:
Q  215 ttacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    |||||||||||| ||||||| |||||||||||| ||||| |||||||||||||    
T  22119081 ttacaacttttggttctaaa-gtgattccatta-ttttgaaaatcaccaacaa 22119131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 35368964 - 35368870
Alignment:
Q  65 gtgtcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatg 159  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||  ||||||| ||||||||||||||||| ||||||||||||||||||    
T  35368964 gtgtcaaattaatgcccaaatgtcaagcatttatagtgcattatatgacttttcacatgagagaaaacactcatttgacttgaatcaatgttatg 35368870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 13556358 - 13556273
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatg 159  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| ||| ||||| ||||||||||||| ||||    
T  13556358 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacccatttgacttgaatcaatgctatg 13556273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 9872478 - 9872398
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||  ||||||||||||||||||    
T  9872478 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatg 9872398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 9877593 - 9877513
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||  ||||||||||||||||||    
T  9877593 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatg 9877513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 39909108 - 39909188
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||  ||||||||||||||||||    
T  39909108 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatg 39909188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 43540839 - 43540749
Alignment:
Q  69 caaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    |||||||||||||  ||| |||| ||||||||||||| ||||||||||||||||  |||| ||||||||||| |||||| |||||||||||||    
T  43540839 caaattaatgcccagatgccaagtatttatagtgcattatatgacccttcacat--gagagaacactcatttgacttgagtcaatgttatggt 43540749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 39903995 - 39904075
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||  ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||  ||||||||||||||||||    
T  39903995 taatgccaaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatg 39904075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 2023095 - 2023188
Alignment:
Q  65 gtgtcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatg 159  Q
    ||||| || ||||||||  |||||||||||||||||||||| ||||||| |||||||| ||||||| ||| | ||| ||||||||||||||||||    
T  2023095 gtgtccaactaatgcccatatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcac-cctttgacttgaatcaatgttatg 2023188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 266
Target Start/End: Complemental strand, 13556197 - 13556105
Alignment:
Q  172 tttgccaaagattccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    |||||||||| ||||||| |||||||||||||| || | ||| |||||||| ||| || | ||||||||||||||| ||||||||||||||||||    
T  13556197 tttgccaaaggttccaatgtatatgaaagattcccatgaagagttacaactcttggtt-ttaaagtgattccatta-ttttggaaatcaccaaca 13556105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 43379556 - 43379618
Alignment:
Q  92 catttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatg 159  Q
    |||||||||||||| ||||||||||||||||     ||||||||||||| ||||||||||||||||||    
T  43379556 catttatagtgcattatatgacccttcacat-----aaaacactcattttacttgaatcaatgttatg 43379618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 9877421 - 9877339
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  9877421 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 9877339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 39909280 - 39909362
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||  |||| ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  39909280 ttccaatgtatatgaatggtttacacgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 39909362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 9872306 - 9872225
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  9872306 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaaca 9872225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 4555772 - 4555830
Alignment:
Q  76 atgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacac 134  Q
    |||||| ||||||||||||||||||||||| |||||||  || |||| |||||||||||    
T  4555772 atgcccaaatgtcaagcatttatagtgcattatatgactattaacatgagagaaaacac 4555830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 4555969 - 4556019
Alignment:
Q  215 ttacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||||||| |||||||| |||||||||||| |||||||||||||||||||    
T  4555969 ttacaacttttaattctaaa-gtgattccatta-ttttggaaatcaccaacaa 4556019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 39904167 - 39904249
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| |||||||||| |||| |||||||||||||||||||    
T  39904167 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattcaatta-ttttggaaatcaccaacaa 39904249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 43402191 - 43402100
Alignment:
Q  70 aaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    |||||||||||  |||| ||| |||||||||||||| |||||| |||||| || | ||||||||   |||| | | ||||||||||||||||    
T  43402191 aaattaatgcctcaatgacaaacatttatagtgcattatatgatccttcatatgaaagaaaacatcaatttgattcgaatcaatgttatggt 43402100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 2024420 - 2024468
Alignment:
Q  217 acaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  2024420 acaacttttggttctaaa-gtgattccatta-ttttggaaatcaccaacaa 2024468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 261
Target Start/End: Complemental strand, 24091869 - 24091794
Alignment:
Q  184 tccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcac 261  Q
    |||||| |||||||||||||||||   ||| |||||||| ||| |||| |||||||||| |||| |||||||||||||    
T  24091869 tccaatgtatatgaaagattctcataaagagttacaactcttggttct-aaagtgattctatta-ttttggaaatcac 24091794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 35368735 - 35368679
Alignment:
Q  172 tttgccaaagattccaatatatatgaaagattctcacggagaattacaacttttgat 228  Q
    |||||||||| ||||||| |||||||||||||||||   ||| |||||||| |||||    
T  35368735 tttgccaaaggttccaatgtatatgaaagattctcataaagagttacaactcttgat 35368679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 18608755 - 18608617
Alignment:
Q  24 ggagaattatgatgttaatgcaacaaaattcttgtttcttagtgt---caaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcac 120  Q
    ||||||||||| |||||||| ||||||||||||||||||| ||||   ||||||||||||  |||| ||| ||||| |||||||| |||||||| |||||    
T  18608755 ggagaattatgttgttaatgtaacaaaattcttgtttctt-gtgtgcccaaattaatgcctaaatgccaaacatttgtagtgcattatatgacc-ttcac 18608658  T
Q  121 attagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    || ||||||||||| | ||||||||||||||||||||||||    
T  18608657 atgagagaaaacacccctttaacttgaatcaatgttatggt 18608617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 43956904 - 43956819
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatg 159  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| ||||||||| ||||||||||||| ||||    
T  43956904 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcactcatttgacttgaatcaatgctatg 43956819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 14314965 - 14314885
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||  ||||||||||||||||||    
T  14314965 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctatttaacttgaatcaatg 14314885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 14318669 - 14318589
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||  ||||||||||||||||||    
T  14318669 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctatttaacttgaatcaatg 14318589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 18494230 - 18494150
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgt 155  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| ||| | ||||||||||||||||||    
T  18494230 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcac-cttttaacttgaatcaatgt 18494150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 34108381 - 34108462
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgt 155  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   ||||||||||||||||||    
T  34108381 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgt 34108462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 26987043 - 26986963
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  26987043 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 26986963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 1781963 - 1782055
Alignment:
Q  69 caaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    |||||||||| || |||||||| |||||||||||||  ||| |||| ||||||| |||||||| |||  ||| ||||||||||||||||||||    
T  1781963 caaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcacatgagagaaaatactattttgacttgaatcaatgttatggt 1782055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 26981929 - 26981849
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| |||||||| |||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  26981929 taatgcccaaatgtcaaacatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 26981849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 161
Target Start/End: Complemental strand, 25953221 - 25953142
Alignment:
Q  82 taatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    ||||| ||| |||||||||||||| |||||||| ||||||| ||||||||||| ||||| |||| ||||||| |||||||    
T  25953221 taatgccaaacatttatagtgcattatatgaccattcacatgagagaaaacacccatttgacttaaatcaattttatggt 25953142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 43956743 - 43956665
Alignment:
Q  172 tttgccaaagattccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttt 251  Q
    |||||||||||||||||| |||||||||||||  || | ||| |||||||| |||||||| |||||||||||||||||||    
T  43956743 tttgccaaagattccaatgtatatgaaagatttccatgaagagttacaactcttgattct-aaagtgattccattatttt 43956665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 14318497 - 14318415
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  14318497 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 14318415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 26986871 - 26986789
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  26986871 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 26986789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 34108553 - 34108635
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  34108553 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 34108635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 26981757 - 26981676
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  26981757 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaaca 26981676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 10341021 - 10340936
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatg 159  Q
    |||||||| |||| ||||||||||| |||||| ||||||| |||||||| ||| ||| |||   ||| ||||||||||||| ||||    
T  10341021 taatgcccaaatgccaagcatttatggtgcattatatgactcttcacatgagaaaaagcacctctttgacttgaatcaatgctatg 10340936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 18494059 - 18493978
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||| ||||||||||| ||||||||||||||||||    
T  18494059 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaattgattccatta-ttttggaaatcaccaaca 18493978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 24509841 - 24509946
Alignment:
Q  65 gtgtcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatgg-tca 163  Q
    |||| ||| |||||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||| |||    
T  24509841 gtgttaaactaatgcccaaatgtcaagcatttatagtgcattatatgaaccttcacatgagagaaaacacccatttgacttgaatcaatgttatggttca 24509940  T
Q  164 ttaaac 169  Q
    ||||||    
T  24509941 ttaaac 24509946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 21936749 - 21936653
Alignment:
Q  65 gtgtcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    |||| ||| |||||||| ||||| ||||||||||||||||| |||||||||||||||| ||||||||||| | ||| ||||||||||||||||||||    
T  21936749 gtgttaaactaatgcccaaatgttaagcatttatagtgcattatatgacccttcacatgagagaaaacacccctttgacttgaatcaatgttatggt 21936653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 20752201 - 20752105
Alignment:
Q  65 gtgtcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    ||||||| ||||||||  |||| |||| ||||||||||||| | |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||    
T  20752201 gtgtcaagttaatgcctaaatgccaagtatttatagtgcattagatgacctttcacatgagagaaaacactcatttgacttgaatcaatgttatggt 20752105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 21275923 - 21276003
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  21275923 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 21276003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 24508918 - 24508827
Alignment:
Q  70 aaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    |||||||||||| |||| ||| |||||| ||| ||| |||||||||||| ||| ||||||||||| | ||| ||||||||||||||||||||    
T  24508918 aaattaatgcccaaatgccaaacatttacagtacataatatgacccttctcatgagagaaaacacccctttgacttgaatcaatgttatggt 24508827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 21937707 - 21937812
Alignment:
Q  65 gtgtcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatgg-tca 163  Q
    |||| ||| |||||||| |||| ||| |||||||||||| | |||||||||||||||| |||||||| || | ||| |||||||||||||| |||| |||    
T  21937707 gtgttaaactaatgcccaaatgccaaacatttatagtgcgttatatgacccttcacatgagagaaaatacccctttgacttgaatcaatgtgatggttca 21937806  T
Q  164 ttaaac 169  Q
    ||||||    
T  21937807 ttaaac 21937812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 21276095 - 21276177
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  21276095 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 21276177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 267
Target Start/End: Complemental strand, 20751953 - 20751880
Alignment:
Q  191 tatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    |||||||||| |||||| | ||| ||||||||||||| ||| ||||||| ||||||| |||||||||||||||||||    
T  20751953 tatatgaaaggttctcatgaagagttacaacttttga-tct-aaagtgaatccatta-ttttggaaatcaccaacaa 20751880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 21936457 - 21936408
Alignment:
Q  215 ttacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    |||||||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  21936457 ttacaacttttggttctaaa-gtgattccatta-ttttggaaatcaccaaca 21936408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 11183083 - 11183002
Alignment:
Q  169 ccctttgccaaagattccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttt 251  Q
    ||||||||||||  ||||||| |||||||||||||  || | ||| ||||||| |||| |||| ||| |||||||||||||||    
T  11183083 ccctttgccaaatgttccaatgtatatgaaagatttccatgaagagttacaacatttggttct-aaattgattccattatttt 11183002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 49784636 - 49784721
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatg 159  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||    
T  49784636 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacactcatttgacttgaatcaatgttatg 49784721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 5458065 - 5457984
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgt 155  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||  |||||||||||||||||||    
T  5458065 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatgt 5457984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 5481542 - 5481461
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgt 155  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||  |||||||||||||||||||    
T  5481542 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatgt 5481461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 4049958 - 4050038
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||   |||||||||||||||||    
T  4049958 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctctttaacttgaatcaatg 4050038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 10584912 - 10584832
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||   |||||||||||||||||    
T  10584912 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctctttaacttgaatcaatg 10584832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 8464900 - 8464981
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgt 155  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   ||||||||||||||||||    
T  8464900 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgt 8464981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 1302298 - 1302218
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  1302298 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 1302218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 4055092 - 4055172
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  4055092 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 4055172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 6853006 - 6852926
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  6853006 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 6852926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 6858109 - 6858029
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  6858109 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaatcacctctttaacttgaatcaatg 6858029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 10591349 - 10591269
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  10591349 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 10591269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 10672992 - 10672912
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  10672992 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 10672912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 29827501 - 29827638
Alignment:
Q  24 ggagaattatgatgttaatgcaacaaaattcttgtttct---tagtgtcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcac 120  Q
    ||||||||| | | ||||||||||||||||||||||| |   |  ||||||| |||||||| |||| |||||||||||| ||||| |||||| | |||||    
T  29827501 ggagaattaggttattaatgcaacaaaattcttgtttatgttttttgtcaaactaatgcccaaatgccaagcatttataatgcattatatga-ctttcac 29827599  T
Q  121 attagagaaaacactcatttaacttgaatcaatgttatg 159  Q
    || | ||||||||| | ||| ||||||||||||||||||    
T  29827600 atgatagaaaacacccctttgacttgaatcaatgttatg 29827638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 33702653 - 33702573
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  33702653 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 33702573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 8458471 - 8458542
Alignment:
Q  83 aatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    ||||||||||||||||||||||| ||||||| |||||||| |||||||||||   |||||||||||||||||    
T  8458471 aatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctctttaacttgaatcaatg 8458542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 18024239 - 18024174
Alignment:
Q  69 caaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacac 134  Q
    |||||| ||| || ||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  18024239 caaattgatgaccaaatgtcaagcatttatagtgcattatatgacccttcacatgagagaaaacac 18024174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 31076456 - 31076376
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||| ||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  31076456 taatgcccaaatgtcaagcatttataatgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 31076376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 31081561 - 31081481
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||| ||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  31081561 taatgcccaaatgtcaagcatttataatgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 31081481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 20891171 - 20891237
Alignment:
Q  68 tcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacac 134  Q
    ||||||| || ||| |||| |||||||||||||||||| |||||||||||||||| |||||||||||    
T  20891171 tcaaattgatacccaaatgccaagcatttatagtgcattatatgacccttcacatgagagaaaacac 20891237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 33703450 - 33703506
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaa 130  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||    
T  33703450 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaa 33703506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 20891474 - 20891550
Alignment:
Q  186 caatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaa 264  Q
    |||| |||||||| |||||||| | ||| |||||||||||| |||| ||||||||||||||| ||||||||||||||||    
T  20891474 caatgtatatgaatgattctcatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaa 20891550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 269532 - 269582
Alignment:
Q  216 tacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaaa 268  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  269532 tacaacttttgattctaaa-gtgattccattatttt-ggaaatcaccaacaaa 269582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 4050130 - 4050212
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  4050130 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 4050212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 4055264 - 4055346
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  4055264 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 4055346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 5481370 - 5481288
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  5481370 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 5481288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 6857937 - 6857855
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  6857937 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 6857855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 10672820 - 10672738
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  10672820 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 10672738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 10677933 - 10677851
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  10677933 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 10677851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 1302126 - 1302045
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    |||||||||||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||| |||||||    
T  1302126 ttccaatatatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaattaccaaca 1302045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 6852834 - 6852753
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  6852834 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaaca 6852753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 8465072 - 8465153
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  8465072 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaaca 8465153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 10584740 - 10584659
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  10584740 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaaca 10584659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 10678107 - 10678025
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgata--tgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| |||  |||| |||||||| | ||||| |||   |||||||||||||||||    
T  10678107 taatgcccaaatgtcaagcatttatagtgcattatatgtgactcttcacatgaaagaaagcacctttttaacttgaatcaatg 10678025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 8458634 - 8458716
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||  ||||||| |||||||||||| |||||||||||||||||||    
T  8458634 ttccaatgtatatgaatggttcccatgaagagttacaacttttagttctaaa-gtgattccatta-ttttggaaatcaccaacaa 8458716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 10591177 - 10591095
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||| ||||    
T  10591177 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccgacaa 10591095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 29827836 - 29827886
Alignment:
Q  215 ttacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||||||||||||| ||||||||||||||  |||||||||||||||||||    
T  29827836 ttacaacttttgattct-aaagtgattccatt-cttttggaaatcaccaacaa 29827886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 31081389 - 31081307
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| | |||||||||| ||||||| |||||||||||||||| |||||||||||||||    
T  31081389 ttccaatgtatatgaatggttcccatgaagagtcacaacttttggttctaaa-gtgattccattatttt-ggaaatcaccaacaa 31081307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 33702449 - 33702400
Alignment:
Q  215 ttacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    |||||||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  33702449 ttacaacttttggttctaaa-gtgattccatta-ttttggaaatcaccaaca 33702400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 29827773 - 29827823
Alignment:
Q  172 tttgccaaagattccaatatatatgaaagattctcacggagaattacaact 222  Q
    |||||||||| ||||||| |||||||||||||| || | ||||||||||||    
T  29827773 tttgccaaaggttccaatctatatgaaagattcccatgcagaattacaact 29827823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 31076248 - 31076201
Alignment:
Q  217 acaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    |||||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  31076248 acaacttttggttctaaa-gtgattccatta-ttttggaaatcaccaaca 31076201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 18023963 - 18023913
Alignment:
Q  215 ttacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    |||||||||||| || |||| |||||||||||||||| |||||||||||||||    
T  18023963 ttacaacttttggttataaa-gtgattccattatttt-ggaaatcaccaacaa 18023913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 4181509 - 4181374
Alignment:
Q  24 ggagaattatgatgttaatgcaacaaaattcttgtt--tcttagtgtcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcaca 121  Q
    ||||||||||| |||||||||||||||||||| |||  | |  ||||||||||||||||| |||||||| |||||||||||||| ||||||| ||||| |    
T  4181509 ggagaattatgttgttaatgcaacaaaattctcgtttatgtgtgtgtcaaattaatgcccaaatgtcaaacatttatagtgcattatatgactcttcata 4181410  T
Q  122 ttagagaaaacactcatttaacttgaatcaatgtta 157  Q
    | |||||||||||   ||| ||||||||||||||||    
T  4181409 tgagagaaaacaccattttgacttgaatcaatgtta 4181374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 5440359 - 5440267
Alignment:
Q  69 caaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    |||||||| |||| |||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  5440359 caaattaaagcccaaatgccaagcatttatagtgcattatatgacccttcacatgagagaaaacacccatttgacttgaatcaatgttatggt 5440267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 5449369 - 5449277
Alignment:
Q  69 caaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    |||||||| |||| |||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||    
T  5449369 caaattaaagcccaaatgccaagcatttatagtgcattatatgacccttcacatgagagaaaacacccatttgacttgaatcaatgttatggt 5449277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 37459919 - 37459783
Alignment:
Q  72 attaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatgg-tcattaaac- 169  Q
    |||||||||| ||||||||| ||||||||||||| ||||| || ||||||| ||||||||||| ||||| | ||||||  ||||||||| |||||||||     
T  37459919 attaatgcccaaatgtcaagtatttatagtgcattatatgtccattcacatgagagaaaacacgcatttgatttgaattgatgttatggttcattaaaca 37459820  T
Q  170 --cctttgccaaagattccaatatatatgaaagattc 204  Q
      | |||||||||| || |||| |||||||| |||||    
T  37459819 ctcatttgccaaaggttacaatgtatatgaatgattc 37459783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 12851826 - 12851907
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgt 155  Q
    |||||||| ||||||||| ||||||||||||| ||||||| |||||||| ||||||| |||  |||||||||||||||||||    
T  12851826 taatgcccaaatgtcaagtatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatgt 12851907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 12856939 - 12857019
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  12856939 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 12857019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 26051171 - 26051251
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||  ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  26051171 taatgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 26051251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 26056284 - 26056364
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||  ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  26056284 taatgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 26056364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 26060530 - 26060610
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||  ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  26060530 taatgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 26060610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 26065643 - 26065723
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||  ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  26065643 taatgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 26065723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 12857111 - 12857194
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaaa 268  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| ||||||||||||||||||||    
T  12857111 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaaa 12857194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 119
Target Start/End: Complemental strand, 35352427 - 35352330
Alignment:
Q  25 gagaattatgatgttaatgcaacaaaattcttgt-ttct-tagtgtc-aaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttca 119  Q
    |||||||||| ||||||||  ||||||||||||| || | | ||||| |||||||||||| |||||||||||| ||| |||||| |||||||||||||    
T  35352427 gagaattatgttgttaatgtgacaaaattcttgtattgtgttgtgtccaaattaatgcccaaatgtcaagcatatatggtgcattatatgacccttca 35352330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 26051343 - 26051425
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  26051343 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 26051425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 26056456 - 26056538
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  26056456 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 26056538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 26060702 - 26060784
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  26060702 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 26060784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 26065815 - 26065897
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  26065815 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 26065897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 12852001 - 12852080
Alignment:
Q  186 caatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    |||| |||||||| | ||| || | ||| |||||||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  12852001 caatgtatatgaatggttcccatgaagagttacaacttttggttctaaa-gtgattccatta-ttttggaaatcaccaacaa 12852080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 4181322 - 4181276
Alignment:
Q  218 caacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||||||    
T  4181322 caacttttgattttaaa-gtgattccatta-ttttggaaatcaccaaca 4181276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 161
Target Start/End: Complemental strand, 10186641 - 10186548
Alignment:
Q  68 tcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    |||||||||||||| |||||||| |||||||||||||| |||||||||||||||| ||||||| ||| ||||| ||||||| ||||| ||||||    
T  10186641 tcaaattaatgcccaaatgtcaaacatttatagtgcattatatgacccttcacatgagagaaagcacccatttgacttgaaccaatgctatggt 10186548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 158
Target Start/End: Original strand, 19310954 - 19311047
Alignment:
Q  65 gtgtcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttat 158  Q
    ||||||||||||||||| |||||||| |||||||||||||| | |||||||||||||| ||||||| ||| | ||| |||||||||||||||||    
T  19310954 gtgtcaaattaatgcccaaatgtcaaacatttatagtgcattacatgacccttcacatgagagaaagcacccctttgacttgaatcaatgttat 19311047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 28574447 - 28574527
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||  ||||||||||||||||||    
T  28574447 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctatttaacttgaatcaatg 28574527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 28598459 - 28598539
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||  ||||||||||||||||||    
T  28598459 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctatttaacttgaatcaatg 28598539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 68 - 161
Target Start/End: Complemental strand, 44524093 - 44523998
Alignment:
Q  68 tcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcac--attagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    |||||||||||||| |||||||| |||||||||||||| ||||||||||||||  || || |||||||| ||||| ||||||||||||||||||||    
T  44524093 tcaaattaatgcccaaatgtcaaacatttatagtgcattatatgacccttcacatatgagggaaaacacccatttgacttgaatcaatgttatggt 44523998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 16051296 - 16051422
Alignment:
Q  37 gttaatgcaacaaaattcttgtttct-tagtgtc-aaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacac 134  Q
    ||||||| |||||||||||||||  | | ||||| |||||||||||| |||||||| |||||||||||||| |||||||| ||||||| || ||||||||    
T  16051296 gttaatgtaacaaaattcttgttcttgttgtgtccaaattaatgcccaaatgtcaaacatttatagtgcattatatgaccattcacatgagtgaaaacac 16051395  T
Q  135 tcatttaacttgaatcaatgttatggt 161  Q
     | ||| ||||||||||||| ||||||    
T  16051396 ccttttgacttgaatcaatgatatggt 16051422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 13654467 - 13654546
Alignment:
Q  82 taatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    ||||| |||| ||||||||||||| |||||||||||||||| ||||||||||| | ||| ||||||||||||||||||||    
T  13654467 taatgccaagtatttatagtgcattatatgacccttcacatgagagaaaacacccctttgacttgaatcaatgttatggt 13654546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 159
Target Start/End: Original strand, 43358884 - 43358978
Alignment:
Q  65 gtgtcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatg 159  Q
    ||||| || |||||||| |||| |||||||||||||||||| ||| ||| |||||||| ||||||| ||||||||| ||||||||||||| ||||    
T  43358884 gtgtccaactaatgcccaaatgccaagcatttatagtgcattataggactcttcacatgagagaaagcactcatttgacttgaatcaatgctatg 43358978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 3468218 - 3468299
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgt 155  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   ||||||||||||||||||    
T  3468218 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacatctttaacttgaatcaatgt 3468299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 21431736 - 21431648
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaaca-ctcatttaacttgaatcaatgttatggt 161  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||| || | | ||| |||| |||||||||||||||    
T  21431736 taatgcccaaatgtcaagcatttatagtgcattatatgacccttcacatgagagaaagcaccccctttgacttaaatcaatgttatggt 21431648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 35653311 - 35653220
Alignment:
Q  70 aaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    |||||||||||| |||||||||  ||||||  ||   |||||||||||||||| ||||||||||||||||| | ||||||||||| ||||||    
T  35653311 aaattaatgcccaaatgtcaagtgtttataaggctatatatgacccttcacatgagagaaaacactcatttgaattgaatcaatgatatggt 35653220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 3468418 - 3468471
Alignment:
Q  211 agaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  3468418 agaattacaacttttgattctaaaa-tgattccatta-ttttggaaatcaccaaca 3468471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 17414627 - 17414556
Alignment:
Q  69 caaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcattt 140  Q
    |||||| |||||| |||| |||||||||||||||||| |||||||| ||||||| ||||||| ||| |||||    
T  17414627 caaattgatgcccaaatgccaagcatttatagtgcattatatgaccattcacatgagagaaaccacccattt 17414556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 43359124 - 43359205
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    ||||||| |||||||| |||||||| | ||| |||||||| ||| ||||||| |||||||||||| ||||||||||||||||||    
T  43359124 ttccaatgtatatgaatgattctcatgaagagttacaactcttggttctaaa-gtgattccatta-ttttggaaatcaccaaca 43359205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 1187952 - 1188057
Alignment:
Q  65 gtgtcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatgg-tca 163  Q
    ||||||||||||||||| |||| |||||| ||||  || || ||||||| || ||||| |||| |||||| | ||| |||||||| |||||||||| |||    
T  1187952 gtgtcaaattaatgcccaaatggcaagcacttattatggattatatgactctacacatgagagtaaacacccctttgacttgaattaatgttatggttca 1188051  T
Q  164 ttaaac 169  Q
    ||||||    
T  1188052 ttaaac 1188057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 28574619 - 28574701
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  28574619 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaacaa 28574701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 3701548 - 3701492
Alignment:
Q  78 gccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacac 134  Q
    |||| ||||||||| ||||||||||||| || |||| |||||||| |||||||||||    
T  3701548 gcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacac 3701492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 267
Target Start/End: Original strand, 28598631 - 28598713
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  28598631 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaattgattccatta-ttttggaaatcaccaacaa 28598713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 21431799 - 21431764
Alignment:
Q  24 ggagaattatgatgttaatgcaacaaaattcttgtt 59  Q
    ||||||||||| ||||||||||||||||||||||||    
T  21431799 ggagaattatgttgttaatgcaacaaaattcttgtt 21431764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 19311121 - 19311174
Alignment:
Q  169 ccctttgccaaagattccaatatatatgaaagattctcacggagaattacaact 222  Q
    ||||||||||||| ||||||| |||||||||||||| || | ||| ||||||||    
T  19311121 ccctttgccaaaggttccaatgtatatgaaagattcccatgaagagttacaact 19311174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 10186063 - 10186098
Alignment:
Q  215 ttacaacttttgattctaaaagtgattccattatttt 251  Q
    ||||||||||||||||| |||||||||||||||||||    
T  10186063 ttacaacttttgattct-aaagtgattccattatttt 10186098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 2073 - 1993
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||   |||||||||||||||||    
T  2073 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctctttaacttgaatcaatg 1993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 1901 - 1818
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaaa 268  Q
    ||||||| |||||||| | ||| || | |||  ||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||    
T  1901 ttccaatgtatatgaatggttcccatgaagagatacaacttttggttctaaa-gtgattccatta-ttttgaaaatcaccaacaaa 1818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 14917436 - 14917356
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||||   ||||||||||||||||||    
T  14917436 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacagctatttaacttgaatcaatg 14917356  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 20892409 - 20892321
Alignment:
Q  68 tcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgtt 156  Q
    ||||| |||||||| ||||||||| ||||||||||||| ||||||| |||||||  ||||||||||||||||| | |||||||||||||    
T  20892409 tcaaactaatgcccaaatgtcaagtatttatagtgcattatatgactcttcacacgagagaaaacactcatttgatttgaatcaatgtt 20892321  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 42780314 - 42780410
Alignment:
Q  65 gtgtcaaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    ||||| || |||||||| | |||||| |||||||||||||| ||||||| |||||||| ||||||||||| | ||| ||||||||||||||||||||    
T  42780314 gtgtccaactaatgcccaactgtcaatcatttatagtgcattatatgactcttcacatgagagaaaacacccctttgacttgaatcaatgttatggt 42780410  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 45120537 - 45120618
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgt 155  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   ||||||||||||||||||    
T  45120537 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgt 45120618  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 17720580 - 17720500
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||||| |||   |||||||||||||||||    
T  17720580 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatg 17720500  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 30283504 - 30283417
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    |||||||| |||| ||| |||||||||||||| ||||||| |||||||| | ||||||||| | |||||||||||||||| |||||||    
T  30283504 taatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgaaagaaaacacccctttaacttgaatcaatattatggt 30283417  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 162
Target Start/End: Original strand, 716404 - 716492
Alignment:
Q  74 taatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggtc 162  Q
    |||||||| |||| ||| |||||||||||||| |||||||| |||| || ||||||||||  | ||| |||||||||||||||| ||||    
T  716404 taatgcccaaatgccaaacatttatagtgcattatatgacctttcatatgagagaaaacatccctttgacttgaatcaatgttacggtc 716492  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 14917264 - 14917183
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| ||||||||||||||| ||||||||||||||||||    
T  14917264 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattccatta-ttttggaaatcaccaaca 14917183  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 16286004 - 16286055
Alignment:
Q  107 atatgacccttcacattagagaaaacactcatttaacttgaatcaatgttat 158  Q
    |||||||||||||||| ||||||||||| |||||||||| |||||| |||||    
T  16286004 atatgacccttcacatgagagaaaacacccatttaacttcaatcaacgttat 16286055  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 17720049 - 17719997
Alignment:
Q  215 ttacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaaac 269  Q
    |||||||||||| ||||||| |||||||||||||||| |||||||||||||||||    
T  17720049 ttacaacttttggttctaaa-gtgattccattatttt-ggaaatcaccaacaaac 17719997  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 17720408 - 17720326
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||| |||| |||||||||| |||| |||||||||||||||||||    
T  17720408 ttccaatgtatatgaatggttcccatgaagagttacaacttttggttct-aaagtgattctatta-ttttggaaatcaccaacaa 17720326  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 45120712 - 45120790
Alignment:
Q  186 caatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    |||| |||||||| | ||| || | ||| ||||||||||| |||||||| |||||||||||| ||||||||||||||||||    
T  45120712 caatgtatatgaatggttcccatgaagagttacaacttttaattctaaa-gtgattccatta-ttttggaaatcaccaaca 45120790  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 30283300 - 30283251
Alignment:
Q  215 ttacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  30283300 ttacaacttttggttctaaaa-tgattccattatttt-ggaaatcaccaaca 30283251  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 39178921 - 39179002
Alignment:
Q  183 ttccaatatatatgaaagattctcacggagaattacaacttttgattctaaaagtgattccattatttttggaaatcaccaaca 266  Q
    ||||||| |||||||| | ||| || | ||| |||||||||||  ||||||| |||||||||||| ||||||||||||||||||    
T  39178921 ttccaatgtatatgaatggttcccatgaagagttacaacttttagttctaaa-gtgattccatta-ttttggaaatcaccaaca 39179002  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 16284515 - 16284553
Alignment:
Q  24 ggagaattatgatgttaatgcaacaaaattcttgtttct 62  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  16284515 ggagaattatattgttaatgcaacaaaattcttgtttct 16284553  T

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Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 42780549 - 42780597
Alignment:
Q  217 acaacttttgattctaaaagtgattccattatttttggaaatcaccaacaa 267  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||||||||    
T  42780549 acaacttttggttctaaa-gtgattccatta-ttttggaaatcaccaacaa 42780597  T

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Target: scaffold0006 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 144228 - 144307
Alignment:
Q  82 taatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatgttatggt 161  Q
    ||||| |||| ||||||||||||| |||||||||||||||| ||||||||||| | ||| ||||||||||||||||||||    
T  144228 taatgccaagtatttatagtgcattatatgacccttcacatgagagaaaacacccctttgacttgaatcaatgttatggt 144307  T

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Target: scaffold0005 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 173489 - 173573
Alignment:
Q  70 aaattaatgccctaatgtcaagcatttatagtgcatgatatgacccttcacattagagaaaacactcatttaacttgaatcaatg 154  Q
    |||||||||| | ||| |||| ||||||||| |||| |||||||||||||||| | ||||||||| ||||| |||||||||||||    
T  173489 aaattaatgcacaaatatcaaacatttatagcgcattatatgacccttcacatgatagaaaacacccatttgacttgaatcaatg 173573  T

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