View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12056_low_26 (Length: 231)
Name: NF12056_low_26
Description: NF12056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12056_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 28321008 - 28320812
Alignment:
| Q |
17 |
aaggaaaagttgtgctaaaaaagtattttctacaaaaatgcttgactcaacaaaaaatcttcgccaacaaaagttgcaagaattattggattatgtaaat |
116 |
Q |
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| T |
28321008 |
aaggaaaagttgtgctacaaaagtattttctacaaaaatgcttgactcaacaagaaaccttcgccaacaaaagttgcaagaattattagattatgtgaat |
28320909 |
T |
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| Q |
117 |
gaaaaaagcaacaaaggtgaggtttttgatattggtgaagctgtttttacaaatgtccttaattcagtttcaaacactttgttctctatggatttgg |
213 |
Q |
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| T |
28320908 |
gaaaaaagtaacaaaggtgaggtttttgatattggtgaagctgtttttacaaatgtccttaattcaatttcaaacactttgttctctatggatttgg |
28320812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 213
Target Start/End: Original strand, 28288267 - 28288463
Alignment:
| Q |
17 |
aaggaaaagttgtgctaaaaaagtattttctacaaaaatgcttgactcaacaaaaaatcttcgccaacaaaagttgcaagaattattggattatgtaaat |
116 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| |
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| T |
28288267 |
aaggaaaatttgtgctacaaaagtattttctacaaaaatgcttgactcaacaaaaaacattcgccaacaaaagttacaagtattattggattatgtaaag |
28288366 |
T |
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| Q |
117 |
gaaaaaagcaacaaaggtgaggtttttgatattggtgaagctgtttttacaaatgtccttaattcagtttcaaacactttgttctctatggatttgg |
213 |
Q |
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| T |
28288367 |
gaaaaatgcaacaaaggtgaagcttttgatattggtgaggctgtttttacaactgtccttaattcagtttcaaacactttcttctctatggatttgg |
28288463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 28296946 - 28296750
Alignment:
| Q |
17 |
aaggaaaagttgtgctaaaaaagtattttctacaaaaatgcttgactcaacaaaaaatcttcgccaacaaaagttgcaagaattattggattatgtaaat |
116 |
Q |
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||||||||||||||| | ||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28296946 |
aaggaaaagttgtgccacaaatgtattttctaaaaaaatgcttgactcaacaaaaaaccttcgccaacaaaagttgcaagaattattggattatgtgaat |
28296847 |
T |
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| Q |
117 |
gaaaaaagcaacaaaggtgaggtttttgatattggtgaagctgtttttacaaatgtccttaattcagtttcaaacactttgttctctatggatttgg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||| | ||| ||||||||| |||||||||||||||||||||| ||||||| |
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| T |
28296846 |
gaaaaaagcaacaaaggtgaggtttttgatattggtgaggctgtttttaacactgttcttaattcaatttcaaacactttgttctctattgatttgg |
28296750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 28331487 - 28331291
Alignment:
| Q |
17 |
aaggaaaagttgtgctaaaaaagtattttctacaaaaatgcttgactcaacaaaaaatcttcgccaacaaaagttgcaagaattattggattatgtaaat |
116 |
Q |
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|||||||| |||||||| | |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||| |
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| T |
28331487 |
aaggaaaatttgtgctacacaagtattttctacaaaaatgcttgactcaacaaaaatccttcgtcaacaaaagttgcaagaattattagattatgtgaat |
28331388 |
T |
|
| Q |
117 |
gaaaaaagcaacaaaggtgaggtttttgatattggtgaagctgtttttacaaatgtccttaattcagtttcaaacactttgttctctatggatttgg |
213 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||||||| | ||| ||||||||| ||||||| |||||||||||||| ||||||| |
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| T |
28331387 |
gaaaaaagcaacaaaggagaggtttttgatattggtgaggctgtttttaacactgttcttaattcaatttcaaatactttgttctctattgatttgg |
28331291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 28310434 - 28310238
Alignment:
| Q |
17 |
aaggaaaagttgtgctaaaaaagtattttctacaaaaatgcttgactcaacaaaaaatcttcgccaacaaaagttgcaagaattattggattatgtaaat |
116 |
Q |
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||||||| |||||||| ||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
28310434 |
aaggaaattttgtgctacaaaagtattttctacaaaagtacttgactcaacaaaaatccttcgccaacaaaagttgcaagaattattagattatgtgaat |
28310335 |
T |
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| Q |
117 |
gaaaaaagcaacaaaggtgaggtttttgatattggtgaagctgtttttacaaatgtccttaattcagtttcaaacactttgttctctatggatttgg |
213 |
Q |
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|||||||| || ||||||||| ||||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
28310334 |
gaaaaaagtaagaaaggtgagatttttgatattggtgcggctgtttttacaactatccttaattcaatttcaaacactttgtgttctatggatttgg |
28310238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 84 - 213
Target Start/End: Complemental strand, 28304765 - 28304635
Alignment:
| Q |
84 |
caaaagttgcaagaatta-ttggattatgtaaatgaaaaaagcaacaaaggtgaggtttttgatattggtgaagctgtttttacaaatgtccttaattca |
182 |
Q |
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|||||||| |||||||| ||||||||||| || |||||| || |||||||||| ||||||||||||||||| ||||||||||||| | || |||||||| |
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| T |
28304765 |
caaaagttaaaagaattaattggattatgtgaaagaaaaaggctacaaaggtgaagtttttgatattggtgatgctgtttttacaactttctttaattca |
28304666 |
T |
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| Q |
183 |
gtttcaaacactttgttctctatggatttgg |
213 |
Q |
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| T |
28304665 |
atttcaaacactttgttctctattgatttgg |
28304635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 28336392 - 28336328
Alignment:
| Q |
87 |
aagttgcaagaattattggattatgtaaatgaaaaaagcaacaaaggtgaggtttttgatattgg |
151 |
Q |
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||||||||||||||||||||||| || |||| |||| |||||||||| ||||| |||||||| |
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| T |
28336392 |
aagttgcaagaattattggattacgtgaatggaaaattttacaaaggtgatgttttagatattgg |
28336328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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