View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12056_low_28 (Length: 218)
Name: NF12056_low_28
Description: NF12056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12056_low_28 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 40007229 - 40007012
Alignment:
| Q |
1 |
aagcatttcaatatggttttgataacacattgtggccaagagtttctatctattggcacaaaaaatggaaactgcctttgggttggagcacattctaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40007229 |
aagcatttcaatatggttttgataacaaattgtggccaagagtttctatctattggcacaaaaaatggaaactgcctttgggttggaacacattctaatg |
40007130 |
T |
|
| Q |
101 |
atgggtttttgttgttgtacatttgtttaatttgcaatttcatcgaggaagcataaatccttaagaggtgtatccatgcaacagtgtcgtcagaagagac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40007129 |
atgggtttttgttgttgtacatttgtttaatttgcaatttcatcgaggaagcataaatccttaagaggtgtatccatgcaacagtgtcgtcagaagagac |
40007030 |
T |
|
| Q |
201 |
cttatggaagatgtttat |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
40007029 |
cttatggaagatgtttat |
40007012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University