View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12056_low_4 (Length: 458)
Name: NF12056_low_4
Description: NF12056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12056_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 23 - 440
Target Start/End: Complemental strand, 36073197 - 36072778
Alignment:
| Q |
23 |
attgcaactattgagtcatatataaacattaatataaagaaaatgaaaggaaatttaaccatattagctctgtgttgggatgtggtgattgagccacagg |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36073197 |
attgcaactattgagtcatatataaacattaatataaagaaaaagaaaggaaatttaaccatattagctctatgttgggatgtggtgattgagccacagg |
36073098 |
T |
|
| Q |
123 |
tgtgaaaggaccctccaaaacctccacggtcagatgctcaannnnnnnnn--gcttgtatgctcttctttttaaattcacgagttccccaatgatcacat |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36073097 |
tgtgaaaggaccctccaaaacctccacggtcagatgctcgatttttttttttgcttgtatgctcttctttttaaattcacgagttccccaatgatcacaa |
36072998 |
T |
|
| Q |
221 |
aatgtactccacaaagctggacgtatccatgtcggcctattcatttggctacggaccttgtttagattgtttttcaatactgttgcacctcgtctttcaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36072997 |
aatgtactccacaaagctggacgtatccatgtcggcctattcatttggctacggaccttgtttagattgtttttcaatactgttgcacctcgtctttcaa |
36072898 |
T |
|
| Q |
321 |
agttctttctagcccacacatcatccggtggacaaaatgaaaattgtttctgtaaatataaaaataaacagttagacaaattaacacataaatatagata |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36072897 |
agttctttctagcccacacatcatccggtggacaaaatgaaaattgtttctgtaaatataaaaataaacagttagacaaattaactcataaatatagata |
36072798 |
T |
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| Q |
421 |
tcaaaattaaacctaattat |
440 |
Q |
| |
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|||||||||||||||||||| |
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| T |
36072797 |
tcaaaattaaacctaattat |
36072778 |
T |
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