View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12056_low_6 (Length: 443)
Name: NF12056_low_6
Description: NF12056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12056_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 35045575 - 35045141
Alignment:
| Q |
1 |
cgtcattgcttacatttctcttggtttttgtctttgacaacattaattcccataaattcatcatctaaatgnnnnnnnnaaggnnnnnnntgcttataaa |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| |
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| T |
35045575 |
cgtcattgcttacatttctcctggtttttgtctttgacaacattaattcccataaattcatcatctaaatgtttttttaaggaaaaaaaatgcttataaa |
35045476 |
T |
|
| Q |
101 |
tatctcaagagcatatgctaatgaattgaaggtaaaaatacaattatggaagtggtctatttaactttttaaaagtttaaaacatttcctttttaaggga |
200 |
Q |
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||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
35045475 |
tatctcaagagcatatgttaatgaatcgaaggtagaaatacaattatggaagtggtctatttaactttttaaaagtttaaaacatttccattttaaggaa |
35045376 |
T |
|
| Q |
201 |
aaaacatttgcacttgcgacatttgttagcaaaacattttttcatgctattgttcctaatgaaaataccttgctaattaactcaaaatttggttgagaca |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35045375 |
aaaacatttgcacttgcgacatttgttaacaaaacattttttcatgctattgttcctaatgaaaataccttgctaattaactcaaaatttggttgagaca |
35045276 |
T |
|
| Q |
301 |
taatttaaacctaattaaata-nnnnnnnngaaagataaacctagttacatattatttaacttagagatcaaactaatactttccgaacaatagccttaa |
399 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35045275 |
taatttaaacctaattaaatatatttttttgaaagataaacctaattacatattatttaacttagagatcaaactaatactttccaaacaatagccttaa |
35045176 |
T |
|
| Q |
400 |
ttaaaatgcattaaccatttatgtctagacctttg |
434 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
35045175 |
ttaaaatgcattaaccatttatgtctagacctttg |
35045141 |
T |
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