View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12056_low_8 (Length: 429)
Name: NF12056_low_8
Description: NF12056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12056_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 93 - 422
Target Start/End: Original strand, 42898672 - 42898998
Alignment:
| Q |
93 |
gaacaaatacatccaattatttgttgaaaggaatggcctgttttgttcgtggtgttggaaggactgcccaagctaagagcagacattccaagtggtgctt |
192 |
Q |
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| T |
42898672 |
gaacaaatacatccaattatttgttgaaaggaatggtctgttttgttcgtggtgttggaaggactgcccaagctacgagcagacattccaagtggtgctt |
42898771 |
T |
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| Q |
193 |
catcataaattgttattggagctataatagttgatgccctttatttctagattatgtcagttttgtttcactttctcagttatgtttattatgagctgtt |
292 |
Q |
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| T |
42898772 |
catcataaattgttattggagcta--atagttgatgccctttatttatagattatgtcagttttgttgcactttctcagttatgtttattatgagctgtt |
42898869 |
T |
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| Q |
293 |
tttgaagtttgagcagcaggttttgtttcgtattcaactatggtttatgttaattgacttgcttgnnnnnnnntatatcctatagccagtaatgacactt |
392 |
Q |
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| T |
42898870 |
tttgaagtttgagcagcaggttttgtttcgtattcaactatggtttatgttaatcgacttgcttgaaaaaaaa-aaatcctatagccagtaatgacactt |
42898968 |
T |
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| Q |
393 |
ttaaggccctatatctatccatgtcctttg |
422 |
Q |
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| T |
42898969 |
ttaaggccctatatctatccatgtcttttg |
42898998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 5e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 182 - 357
Target Start/End: Original strand, 38632464 - 38632637
Alignment:
| Q |
182 |
aagtggtgcttcatcataaattgttattggagctataatagttgatgccctttatttctagattatgtcagttttgtttcactttctcagttatgtttat |
281 |
Q |
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| T |
38632464 |
aagtggtgcttcatcataaattgttattggaggca--atagttgagaccctttatttatagattatgtcagttttgttgcactttctcagttatgtttgt |
38632561 |
T |
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| Q |
282 |
tatgagctgtttttgaagtttgagcagcaggttttgtttcgtattcaactatggtttatgttaattgacttgcttg |
357 |
Q |
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| T |
38632562 |
tatgagctgtttttgaagtttgagcagcagtttttgtttcgtattcaactatggtttatgttaattgacttgcttg |
38632637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 139 - 180
Target Start/End: Original strand, 38631815 - 38631856
Alignment:
| Q |
139 |
tcgtggtgttggaaggactgcccaagctaagagcagacattc |
180 |
Q |
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| T |
38631815 |
tcgtggtgttggaaggactgcccaagcaaagaacagacattc |
38631856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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