View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12056_low_9 (Length: 401)
Name: NF12056_low_9
Description: NF12056
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12056_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 30800968 - 30801354
Alignment:
| Q |
1 |
aagttgtgaccatccaatatcagtgactcttttagagaacaaataaaaaagattgcatataaaaaatattccatttatatttatatatgactaataagcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30800968 |
aagttgtgaccatccaatatcagtgactcttttagagaacaaataaaaaagattgcatataaaaaatattccatttatatttatatatgactaataagcg |
30801067 |
T |
|
| Q |
101 |
tacctgcagctggtagcctacatttatgatgaaggcatgaggacgagcctcaagagcaatccactttccatccttcaatacttgaagaccagatacatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30801068 |
tacctgcagctggtagcctacatttatgatgaaggcatgaggacgagcctcaagagcaatccactttccatccttcaatacttgaagaccagatacatca |
30801167 |
T |
|
| Q |
201 |
tcttgcattaaaatagtgatgaggtttggatcagagtgtttactcattcccattgccaaacttggttcaggacatcgtggataatgattaaccgaaagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30801168 |
tcttgcattaaaatagtgatgaggtttggatcagagtgtttactcattcccagtgccaaatttggttcaggacatcgtggataatgattaaccgaaagaa |
30801267 |
T |
|
| Q |
301 |
tcattgacccggtaagatcattgtcaaaatatccacacttcaggccgagcccttcactgatcaaattcatgagccgcgaacctaatt |
387 |
Q |
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| T |
30801268 |
tcattgacccggtaagatcattgtcaaaatatccacacttcaggccgagcccttcactgatcaaattcatgagccgcgaacctaatt |
30801354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 93 - 382
Target Start/End: Original strand, 30808487 - 30808776
Alignment:
| Q |
93 |
aataagcgtacctgcagctggtagcctacatttatgatgaaggcatgaggacgagcctcaagagcaatccactttccatccttcaatacttgaagaccag |
192 |
Q |
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|||||| ||||||||| ||||||||||| || |||| || ||||||||| ||||||||| ||| ||||||| ||||||||| |||||||||||||||| |
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| T |
30808487 |
aataagtgtacctgcaattggtagcctacgttgatgacaaaagcatgaggaagagcctcaacagcgatccactctccatccttgaatacttgaagaccag |
30808586 |
T |
|
| Q |
193 |
atacatcatcttgcattaaaatagtgatgaggtttggatcagagtgtttactcattcccattgccaaacttggttcaggacatcgtggataatgattaac |
292 |
Q |
| |
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||||||| ||||||| |||||| ||||||||||| ||||| |||||||| | ||||| | || |||| ||||||| |||||| |||||||||||||||| |
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| T |
30808587 |
atacatcgtcttgcagtaaaatggtgatgaggttaggatctgagtgtttggtaattcctaatgtcaaatttggttccggacatggtggataatgattaac |
30808686 |
T |
|
| Q |
293 |
cgaaagaatcattgacccggtaagatcattgtcaaaatatccacacttcaggccgagcccttcactgatcaaattcatgagccgcgaacc |
382 |
Q |
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||| | || ||||| ||||||||||||||||||||||| ||| ||| ||||| |||||||||| || |||||||||| || |||||| |
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| T |
30808687 |
cgacaaaagaattgaaccggtaagatcattgtcaaaataaccatactctaggccaagcccttcaccgaataaattcatgatcctcgaacc |
30808776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 150 - 387
Target Start/End: Original strand, 30793401 - 30793642
Alignment:
| Q |
150 |
tcaagagcaatccactttccatccttcaatacttgaagaccagatacatcatcttgcattaaaatagtgatgaggtttggatcagagtgtttactcattc |
249 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || || || |||||||| || |||| ||||||| |
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| T |
30793401 |
tcaagagcgatccactctccatccttcaatacttgaagaccacatacatcatcttgcattaaaatggtaataagatttggatctgaaagtttgctcattc |
30793500 |
T |
|
| Q |
250 |
ccattgccaaacttggttcaggacatcgtggataatgattaaccgaaagaatcattgacccggtaagatcattgtcaaaatatccacactt-----cagg |
344 |
Q |
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| | || ||||||||||| ||| ||| || ||||||| ||| | | |||||||| || ||||||||||||||||||||||||||||| || |
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| T |
30793501 |
ctaatgtcaaacttggtttagggcatgccgggtaatgataaactaataatatcattga-ccagtaagatcattgtcaaaatatccacacttcaaaccaaa |
30793599 |
T |
|
| Q |
345 |
ccgagcccttcactgatcaaattcatgagccgcgaacctaatt |
387 |
Q |
| |
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|| || ||| | ||||||||||||||||||| ||||||||||| |
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| T |
30793600 |
ccaagtcctcccctgatcaaattcatgagcctcgaacctaatt |
30793642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 159 - 372
Target Start/End: Original strand, 30783551 - 30783764
Alignment:
| Q |
159 |
atccactttccatccttcaatacttgaagaccagatacatcatcttgcattaaaatagtgatgaggtttggatcagagtgtttactcattcccattgcca |
258 |
Q |
| |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |||||| | || | || || |
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| T |
30783551 |
atccactttccatcctttaatacttgaagaccacttacatcatcttgcattaaaatggtgatgaggtaaggatctttgtgtttggataaacctaatgtca |
30783650 |
T |
|
| Q |
259 |
aacttggttcaggacatcgtggataatgattaaccgaaagaatcattgacccggtaagatcattgtcaaaatatccacacttcaggccgagcccttcact |
358 |
Q |
| |
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||||||||| ||| || ||||||||||||||| || ||||| ||| ||||||||||| |||||||||||||||| || ||| || ||||||||||| |
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| T |
30783651 |
aacttggttaagggcacggtggataatgattaattgaggtaatcaatgatccggtaagatcgttgtcaaaatatccacgctgcagaccaagcccttcact |
30783750 |
T |
|
| Q |
359 |
gatcaaattcatga |
372 |
Q |
| |
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||||||| ||||| |
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| T |
30783751 |
aatcaaatccatga |
30783764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 343
Target Start/End: Original strand, 30740243 - 30740427
Alignment:
| Q |
159 |
atccactttccatccttcaatacttgaagaccagatacatcatcttgcattaaaatagtgatgaggtttggatcagagtgtttactcattcccattgcca |
258 |
Q |
| |
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||||| |||||||| || ||||||||||| ||| ||||||||||||||||||||| |||||||||| | ||| |||||| | || | | | |
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| T |
30740243 |
atccaatttccatcttttaatacttgaaggccacttacatcatcttgcattaaaatggtgatgaggtaagcatctttgtgtttgggtaaacctaaagtta |
30740342 |
T |
|
| Q |
259 |
aacttggttcaggacatcgtggataatgattaaccgaaagaatcattgacccggtaagatcattgtcaaaatatccacacttcag |
343 |
Q |
| |
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||||||||||||| ||| |||| |||||||||| || ||||||||| |||| |||||| || |||||||||||||||||||| |
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| T |
30740343 |
aacttggttcagggcatggtgggtaatgattaattgaggtaatcattgatccggcaagatcgttttcaaaatatccacacttcag |
30740427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 372
Target Start/End: Original strand, 30759174 - 30759229
Alignment:
| Q |
317 |
atcattgtcaaaatatccacacttcaggccgagcccttcactgatcaaattcatga |
372 |
Q |
| |
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||||||||| ||||||||||||| || || ||||||||||| ||||||||||||| |
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| T |
30759174 |
atcattgtcgaaatatccacactccaaaccaagcccttcactaatcaaattcatga |
30759229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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