View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12057_high_12 (Length: 358)
Name: NF12057_high_12
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12057_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 138 - 338
Target Start/End: Original strand, 35470820 - 35471020
Alignment:
| Q |
138 |
tggcaccacaaaaagaccaaaacactacatctcttcctaaaaccataagatataatttgagtcaccacttttaaaatgtcttttatttatctcatttcaa |
237 |
Q |
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| T |
35470820 |
tggcaccgcaaaaagatcaaaacactatatctctttctaaaaccataagatataatatgagtcaccacttttaaaatgtcttttatttatctcatttcaa |
35470919 |
T |
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| Q |
238 |
catcgggttaatcactcttacttgaacttcaacatggtcgtagatataactatttcaaagaaagnnnnnnnnnntatgaacttaaattataaagaatata |
337 |
Q |
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| T |
35470920 |
catcgaattaatcactcttacttaaactccaacatggtcgtagatataactatttcaaagaaagaaaaaaaaaaaatgaacttaaattataaagaatata |
35471019 |
T |
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| Q |
338 |
t |
338 |
Q |
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| T |
35471020 |
t |
35471020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 35470694 - 35470759
Alignment:
| Q |
12 |
catcaatttggccggtttaagcgataagagactcaaaccttaaatctttaactcatgtgtatgaag |
77 |
Q |
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| T |
35470694 |
catcaatttggccggtttaagcgataagagactcaaaccttaaatctttaacttatgtgtatgaag |
35470759 |
T |
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