View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12057_high_15 (Length: 299)
Name: NF12057_high_15
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12057_high_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 11654785 - 11654820
Alignment:
| Q |
195 |
atcaactaacagcccttctacatcacataacccacc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
11654785 |
atcaactaacagcccttctacatcacataacccacc |
11654820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 11668553 - 11668588
Alignment:
| Q |
195 |
atcaactaacagcccttctacatcacataacccacc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
11668553 |
atcaactaacagcccttctacatcacataacccacc |
11668588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 11654648 - 11654680
Alignment:
| Q |
58 |
cctcaaagcccttctacaccacacagctcacca |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
11654648 |
cctcaaagcccttctacaccacacagctcacca |
11654680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 11668416 - 11668448
Alignment:
| Q |
58 |
cctcaaagcccttctacaccacacagctcacca |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
11668416 |
cctcaaagcccttctacaccacacagctcacca |
11668448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University