View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12057_high_22 (Length: 251)

Name: NF12057_high_22
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12057_high_22
NF12057_high_22
[»] chr6 (11 HSPs)
chr6 (3-238)||(31201119-31201354)
chr6 (3-238)||(31189312-31189547)
chr6 (1-238)||(31145252-31145489)
chr6 (1-238)||(31171565-31171802)
chr6 (2-238)||(31224602-31224838)
chr6 (1-238)||(30992579-30992816)
chr6 (5-238)||(30961097-30961330)
chr6 (60-238)||(31229882-31230060)
chr6 (51-238)||(31214333-31214520)
chr6 (146-226)||(30945104-30945184)
chr6 (146-226)||(30955364-30955444)
[»] chr8 (1 HSPs)
chr8 (120-184)||(44035822-44035886)
[»] chr1 (7 HSPs)
chr1 (136-178)||(10906997-10907039)
chr1 (136-178)||(10930880-10930922)
chr1 (136-178)||(10993084-10993126)
chr1 (126-175)||(9125105-9125154)
chr1 (136-169)||(11041252-11041285)
chr1 (114-175)||(49725337-49725398)
chr1 (123-175)||(8861524-8861576)
[»] chr4 (1 HSPs)
chr4 (119-175)||(27696365-27696421)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 31201119 - 31201354
Alignment:
Q  3 tcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagacttg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31201119 tcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagacttg 31201218  T
Q  103 catcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatgaaactcctccaaaatgtctatt 202  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31201219 catcagcattaatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatgaaactcctccaaaatgtctatt 31201318  T
Q  203 ccacatttctggagctacatatcccatagtccctct 238  Q
    ||||||||||||||||||||||||||||||||||||    
T  31201319 ccacatttctggagctacatatcccatagtccctct 31201354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 31189312 - 31189547
Alignment:
Q  3 tcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagacttg 102  Q
    |||||||||||||||||||| ||||||||||||| |||| | |||||||| ||||||||||||||||| || ||||||||||||||||| ||| ||||||    
T  31189312 tcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcactagtgtgacttg 31189411  T
Q  103 catcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatgaaactcctccaaaatgtctatt 202  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||    
T  31189412 catcagcaataatgtttttcctcccaccaaccatttccagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctatt 31189511  T
Q  203 ccacatttctggagctacatatcccatagtccctct 238  Q
    ||||| ||||||||||||||||||||| ||||||||    
T  31189512 ccacacttctggagctacatatcccattgtccctct 31189547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 31145252 - 31145489
Alignment:
Q  1 catcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagact 100  Q
    |||||||||||||||||||||| ||||||||||||| |||| | |||||||| ||||||||||||||||| || ||||||||||||||||| ||| ||||    
T  31145252 catcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcactagtgtgact 31145351  T
Q  101 tgcatcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatgaaactcctccaaaatgtcta 200  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||    
T  31145352 tgcatcagcaatgatgtttttcctccctccaaccatttctagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtcta 31145451  T
Q  201 ttccacatttctggagctacatatcccatagtccctct 238  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  31145452 ttccacacttctggagctacatatcccattgtccctct 31145489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 31171565 - 31171802
Alignment:
Q  1 catcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagact 100  Q
    |||||||||||||||||||||| ||||||||||||| |||| | |||||||| ||||||||||||||||| || ||||||||||||||||| ||| ||||    
T  31171565 catcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaagtatatctcactagtgtgact 31171664  T
Q  101 tgcatcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatgaaactcctccaaaatgtcta 200  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||    
T  31171665 tgcatcagcaatgatgtttttcctccctccaaccatttctagcaacatcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtcta 31171764  T
Q  201 ttccacatttctggagctacatatcccatagtccctct 238  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  31171765 ttccacacttctggagctacatatcccattgtccctct 31171802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 31224838 - 31224602
Alignment:
Q  2 atcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagactt 101  Q
    |||||||||||||||||| | |||||||||||| |||| |||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||| |||||    
T  31224838 atcttcttctgtatccattattccatcaggtctaaaatcactagcaagctcaagccttttgtatacccaatgaggaaaatatatctcacttgtgcgactt 31224739  T
Q  102 gcatcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatgaaactcctccaaaatgtctat 201  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  31224738 gcatcagcattaatgtttttcctccctccaaccatttccagcaatatcattccataactataaacatcagacttgtgtgaaactcctccaaaatgtctat 31224639  T
Q  202 tccacatttctggagctacatatcccatagtccctct 238  Q
    |||||| ||||||||||||||| ||||| || |||||    
T  31224638 tccacacttctggagctacataccccattgttcctct 31224602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 30992816 - 30992579
Alignment:
Q  1 catcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagact 100  Q
    |||||||||| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  30992816 catcttcttccgtatccattaccccatcaggtctcaaataactaccaagttcaagcctattgtatacccaatgaggaaagtatatctcacttgtgtgact 30992717  T
Q  101 tgcatcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatgaaactcctccaaaatgtcta 200  Q
    |||||| ||| |||| |||||||  || || |||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  30992716 tgcatccgcattaatatttttccgtccacccaccatttctaacaacatcattccataactataaacatcagacttgtgtgaaactcctccaaaatgtcta 30992617  T
Q  201 ttccacatttctggagctacatatcccatagtccctct 238  Q
    ||||||| ||||||||||||||| ||||| ||||||||    
T  30992616 ttccacacttctggagctacataccccattgtccctct 30992579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 30961330 - 30961097
Alignment:
Q  5 ttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagacttgca 104  Q
    ||||||||||||  | || |||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  30961330 ttcttctgtatcagttaccccatcaggtctcaaatcactaccaagttcaagcctattgtatacccaatgaggaaagtatatctcacttgtgtgacttgca 30961231  T
Q  105 tcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatgaaactcctccaaaatgtctattcc 204  Q
    || ||| |||| |||||||  || || |||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  30961230 tccgcattaatatttttccgtccacccaccatttctaacaacatcattccataactataaacatcagacttgtgtgaaactcctccaaaatgtctattcc 30961131  T
Q  205 acatttctggagctacatatcccatagtccctct 238  Q
    ||| ||| ||||||||||| ||||| ||||||||    
T  30961130 acacttcaggagctacataccccattgtccctct 30961097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 60 - 238
Target Start/End: Complemental strand, 31230060 - 31229882
Alignment:
Q  60 ttgtatacccagtgaggaaagtatatctcacttgtgagacttgcatcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataac 159  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||| ||  |||||||||||||||| ||||||||||| |||||||||||||||||||    
T  31230060 ttgtatacccaatgaggaaagtatatctcacttgtttgacttgcatcggcgttaatgtttttcctcccaccaaccatttctagcaacatcattccataac 31229961  T
Q  160 tataaacatcggacttgtatgaaactcctccaaaatgtctattccacatttctggagctacatatcccatagtccctct 238  Q
    ||||||| || |||||||  ||||||| |||||||| | ||||||| |  || ||||||||||| ||||| ||||||||    
T  31229960 tataaacgtcagacttgtgcgaaactcatccaaaatttatattccataactcaggagctacataccccattgtccctct 31229882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 51 - 238
Target Start/End: Complemental strand, 31214520 - 31214333
Alignment:
Q  51 tcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagacttgcatcagcaataatgtttttcctccctccaaccatttccagcaacatca 150  Q
    |||| ||| ||||||||||| | |||||||||| ||||||||||  |||||||||  ||| ||||||||||||| ||||| |  ||||||| ||||||||    
T  31214520 tcaaaccttttgtatacccaatcaggaaagtatttctcacttgtatgacttgcattggcactaatgtttttccttcctccgattatttccaacaacatca 31214421  T
Q  151 ttccataactataaacatcggacttgtatgaaactcctccaaaatgtctattccacatttctggagctacatatcccatagtccctct 238  Q
    |||| |||||||||||||| |||||||| ||||| |||||||| | |||||||||||  || ||||||||||||||||| || |||||    
T  31214420 ttccgtaactataaacatcagacttgtacgaaacgcctccaaagtttctattccacaactcaggagctacatatcccatcgttcctct 31214333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 30945184 - 30945104
Alignment:
Q  146 catcattccataactataaacatcggacttgtatgaaactcctccaaaatgtctattccacatttctggagctacatatcc 226  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| | ||||||||||||||||||    
T  30945184 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatcc 30945104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 30955444 - 30955364
Alignment:
Q  146 catcattccataactataaacatcggacttgtatgaaactcctccaaaatgtctattccacatttctggagctacatatcc 226  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| | ||||||||||||||||||    
T  30955444 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatcc 30955364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 44035886 - 44035822
Alignment:
Q  120 ttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatgaaac 184  Q
    |||| ||| ||||||||||| |||||||||||||| |||||||| ||||| ||||| | ||||||    
T  44035886 ttccgcccaccaaccatttctagcaacatcattccgtaactatagacatcagacttatgtgaaac 44035822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 10907039 - 10906997
Alignment:
Q  136 tttccagcaacatcattccataactataaacatcggacttgta 178  Q
    |||| ||||||||||||||||||||||||||||| || |||||    
T  10907039 tttcaagcaacatcattccataactataaacatctgatttgta 10906997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 10930922 - 10930880
Alignment:
Q  136 tttccagcaacatcattccataactataaacatcggacttgta 178  Q
    |||| ||||||||||||||||||||||||||||| || |||||    
T  10930922 tttcaagcaacatcattccataactataaacatctgatttgta 10930880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 10993126 - 10993084
Alignment:
Q  136 tttccagcaacatcattccataactataaacatcggacttgta 178  Q
    |||| ||||||||||||||||||||||||||||| || |||||    
T  10993126 tttcaagcaacatcattccataactataaacatctgatttgta 10993084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 9125105 - 9125154
Alignment:
Q  126 cctccaaccatttccagcaacatcattccataactataaacatcggactt 175  Q
    |||||||||| ||||||||||| ||| ||||||||||||| ||| |||||    
T  9125105 cctccaaccaattccagcaacaacatcccataactataaatatcagactt 9125154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 11041285 - 11041252
Alignment:
Q  136 tttccagcaacatcattccataactataaacatc 169  Q
    |||| |||||||||||||||||||||||||||||    
T  11041285 tttcaagcaacatcattccataactataaacatc 11041252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 49725398 - 49725337
Alignment:
Q  114 atgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggactt 175  Q
    |||||||| ||||  |||||||||||||  | ||||||||||||||| |||||||| |||||    
T  49725398 atgttttttctcctcccaaccatttccatgaccatcattccataactgtaaacatctgactt 49725337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 8861524 - 8861576
Alignment:
Q  123 ctccctccaaccatttccagcaacatcattccataactataaacatcggactt 175  Q
    ||||||||||||||||| ||||||| |||||| ||||| |||| ||| |||||    
T  8861524 ctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgactt 8861576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 27696421 - 27696365
Alignment:
Q  119 tttcctccctccaaccatttccagcaacatcattccataactataaacatcggactt 175  Q
    |||||| |||||||||||||| || | || ||| ||||||||||||||||| |||||    
T  27696421 tttccttcctccaaccatttcaagaagcagcatcccataactataaacatctgactt 27696365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University