View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12057_high_7 (Length: 473)
Name: NF12057_high_7
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12057_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 13 - 466
Target Start/End: Original strand, 5592565 - 5593018
Alignment:
| Q |
13 |
catgatattcataaatcatttagtaaaagcaaaagtgaaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagagattctgca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5592565 |
catgatattcataaatcatttagtaaaagcaaaagtgaaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagattttctgca |
5592664 |
T |
|
| Q |
113 |
tactgctcagggctataaacgttgcttgatagatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatacaagcatt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5592665 |
tactgctcagggctataaacgttgcttgatagatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatacaagcatt |
5592764 |
T |
|
| Q |
213 |
tgttaaggtattcttgagctttgtcaattcctccaagttgactagcaatttgagaaactataactctgtgatttcttaactgtaatcccaagctaatagc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5592765 |
tgttaaggtattcttgagctttgtcaattcctccaagttggctagcaatttgagaaactataactctgtgatttcttaactgtaatcccaagctaatagc |
5592864 |
T |
|
| Q |
313 |
ataaccctgtacgaacataatgttatttttgcggcatgtgtatgagtaatgtaacaaaaatactctaatcatctactaaaaactaatttaaaccttagcc |
412 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5592865 |
ataaccctgtacggacataatgttatttttgcggcatgtgtatgagtaatgtaacaaaaatactctaatcatctactaaaaactaatttaaaccttagcc |
5592964 |
T |
|
| Q |
413 |
gagtatgtctccatacgaattccagctccgccagatgcatagttcacacctttg |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5592965 |
gagtatgtctccatacgaattccagctccgccagatgcatagttcacacctttg |
5593018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 69 - 466
Target Start/End: Original strand, 5572884 - 5573281
Alignment:
| Q |
69 |
atacctgtaaattcaaagataactcttcaattagagattctgcatactgctcagggctataaacgttgcttgatagatataattggggaagaaagtaatt |
168 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||| | | || |||||||||||||||||||| |
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|
| T |
5572884 |
ataccagtaaattcaaagataactcttgaattagagcttctgcatactgctcagggctataaatgtgacttgttgggtagaattggggaagaaagtaatt |
5572983 |
T |
|
| Q |
169 |
atttatgtaatcattactgccaatatgcacataatacaagcatttgttaaggtattcttgagctttgtcaattcctccaagttgactagcaatttgagaa |
268 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
5572984 |
gtttatgtaatcgttacttccaatattcacataatacaagcatttgttaaggtattgttgagctttgtcaatacctccaagtctgctagcaatttgagaa |
5573083 |
T |
|
| Q |
269 |
actataactctgtgatttcttaactgtaatcccaagctaatagcataaccctgtacgaacataatgttatttttgcggcatgtgtatgagtaatgtaaca |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5573084 |
actataactctgtgatttcttaactgtaatcccaagctaatagcataaccctgtacggacataatgttatttttgcggcatgtgtatgagtaatgtaaca |
5573183 |
T |
|
| Q |
369 |
aaaatactctaatcatctactaaaaactaatttaaaccttagccgagtatgtctccatacgaattccagctccgccagatgcatagttcacacctttg |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5573184 |
aaaatactctaatcatctactaaaaactaatttaaaccttagctgagtatgtctccatacgaattccagctccgccagatgcatagttcacacctttg |
5573281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 303
Target Start/End: Original strand, 5586350 - 5586629
Alignment:
| Q |
24 |
taaatcatttagtaaaagcaaaagtgaaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagagattctgcatactgctcagg |
123 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| |
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|
| T |
5586350 |
taaatcatttagtgaaagtaaaagtgaaacacaaagttcaaggggatacctgtaaattcaaagataactcttcaattagagcttctgcgtactgctgagg |
5586449 |
T |
|
| Q |
124 |
gctataaacgttgcttgatagatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatacaagcatttgttaaggtat |
223 |
Q |
| |
|
|||||||| || |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
5586450 |
gctataaatgtgtcttgttggatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatataagcatttattaaggtat |
5586549 |
T |
|
| Q |
224 |
tcttgagctttgtcaattcctccaagttgactagcaatttgagaaactataactctgtgatttcttaactgtaatcccaa |
303 |
Q |
| |
|
||||||||||||| || | ||||||| |||||||||||||||| ||||||| |||||||| |||||||||||||||| |
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|
| T |
5586550 |
tcttgagctttgttaagacttccaagtctgctagcaatttgagaaattataactttgtgattttttaactgtaatcccaa |
5586629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 36 - 400
Target Start/End: Original strand, 5575882 - 5576246
Alignment:
| Q |
36 |
taaaagcaaaagtgaaacacaaagttcaagtggatacctgtaaattcaaagataactcttcaattagagattctgcatactgctcagggctataaacgtt |
135 |
Q |
| |
|
||||| |||| || ||||||| |||| |||||||||| |||||| ||||||||||||| |||||||| ||||||||| |||||||||||||||| | |
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|
| T |
5575882 |
taaaaacaaaggtcaaacacagagtttgagtggataccaataaatttaaagataactcttgaattagagcttctgcatattgctcagggctataaatttg |
5575981 |
T |
|
| Q |
136 |
gcttgatagatataattggggaagaaagtaattatttatgtaatcattactgccaatatgcacataatacaagcatttgttaaggtattcttgagctttg |
235 |
Q |
| |
|
|||| | | || ||||| ||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
5575982 |
acttgttgggtagaattgaggacgaaagtaattgtttatgtaatcattactgccaatattcacataatacaagcatttgctaaggtattcttgagctttg |
5576081 |
T |
|
| Q |
236 |
tcaattcctccaagttgactagcaatttgagaaactataactctgtgatttcttaactgtaatcccaagctaatagcataaccctgtacgaacataatgt |
335 |
Q |
| |
|
||||| ||| ||||| ||||||||| |||||||||||||| |||||||| ||||||||||||||| || ||| || ||||||| || | ||||||| |
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|
| T |
5576082 |
tcaataccttcaagtctgctagcaattcgagaaactataactttgtgattttctaactgtaatcccaaactgataacaaaaccctgcacagaaataatgt |
5576181 |
T |
|
| Q |
336 |
tatttttgcggcatgtgtatgagtaatgtaacaaaaatactctaatcatctactaaaaactaatt |
400 |
Q |
| |
|
|||||| | ||||| |||||||| ||||| |||||||||| | | ||||||||||| |||||||| |
|
|
| T |
5576182 |
tattttggtggcatatgtatgagcaatgtgacaaaaatacacaagtcatctactaataactaatt |
5576246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 200 - 400
Target Start/End: Original strand, 5582176 - 5582376
Alignment:
| Q |
200 |
taatacaagcatttgttaaggtattcttgagctttgtcaattcctccaagttgactagcaatttgagaaactataactctgtgatttcttaactgtaatc |
299 |
Q |
| |
|
||||||||||||||||||||||||| || || ||||||| ||||||||| |||||||||||||||||||| ||| ||||||| |||||||||||| |
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|
| T |
5582176 |
taatacaagcatttgttaaggtattgttcagaactgtcaatacctccaagtctgctagcaatttgagaaactattactttgtgattctttaactgtaatc |
5582275 |
T |
|
| Q |
300 |
ccaagctaatagcataaccctgtacgaacataatgttatttttgcggcatgtgtatgagtaatgtaacaaaaatactctaatcatctactaaaaactaat |
399 |
Q |
| |
|
||||||| ||| || |||||||||| || |||||||||||| | | ||||| ||| || | ||||||||||||| |||| || |||||||||||||||| |
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|
| T |
5582276 |
ccaagctgataacagaaccctgtacagacgtaatgttattttggtgacatgtatataagcagtgtaacaaaaatattctagtcctctactaaaaactaat |
5582375 |
T |
|
| Q |
400 |
t |
400 |
Q |
| |
|
| |
|
|
| T |
5582376 |
t |
5582376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 304
Target Start/End: Complemental strand, 12052563 - 12052456
Alignment:
| Q |
197 |
acataatacaagcatttgttaaggtattcttgagctttgtcaattcctccaagttgactagcaatttgagaaactataactctgtgatttcttaactgta |
296 |
Q |
| |
|
|||||| |||| |||||||||||||||| |||| ||| |||| | ||||||| | ||||||||| ||||||||||| || ||||||| | ||||||| |
|
|
| T |
12052563 |
acataacacaaacatttgttaaggtattgctgagttttttcaagacttccaagtctagtagcaatttcagaaactataagtcggtgatttgtcaactgta |
12052464 |
T |
|
| Q |
297 |
atcccaag |
304 |
Q |
| |
|
|| ||||| |
|
|
| T |
12052463 |
ataccaag |
12052456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 466
Target Start/End: Original strand, 5586717 - 5586782
Alignment:
| Q |
401 |
taaaccttagccgagtatgtctccatacgaattccagctccgccagatgcatagttcacacctttg |
466 |
Q |
| |
|
|||||||||||| | |||||| |||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
5586717 |
taaaccttagccatgcttgtctcggtacgaattccagctgcgccagatgcgtagttcacacctttg |
5586782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 5576313 - 5576361
Alignment:
| Q |
418 |
tgtctccatacgaattccagctccgccagatgcatagttcacacctttg |
466 |
Q |
| |
|
|||||| ||||||||||||||| | |||||||||||||| ||||||||| |
|
|
| T |
5576313 |
tgtctcgatacgaattccagctgcaccagatgcatagttaacacctttg |
5576361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 5582483 - 5582529
Alignment:
| Q |
418 |
tgtctccatacgaattccagctccgccagatgcatagttcacacctt |
464 |
Q |
| |
|
|||||| | ||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
5582483 |
tgtctcgacacgaattccagctccacgagatgcatagttcacacctt |
5582529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 5613506 - 5613546
Alignment:
| Q |
170 |
tttatgtaatcattactgccaatatgcacataatacaagca |
210 |
Q |
| |
|
||||||||||| || |||||||||| ||||||||||||||| |
|
|
| T |
5613506 |
tttatgtaatcgttgctgccaatattcacataatacaagca |
5613546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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