View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12057_low_11 (Length: 377)
Name: NF12057_low_11
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12057_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 6 - 362
Target Start/End: Original strand, 699263 - 699619
Alignment:
| Q |
6 |
agaagcaaaggttaaaaaatggtgggaagagaaagatgttttcaaatcagaacctggtgaaaaccctccaaaaccgggtgaaaaattcttcggcaatttc |
105 |
Q |
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| T |
699263 |
agaatcaaaggttaaaaaatggtgggaagaggaagatgttttcaaatcagaacctggtgaaaaccctccaaaaccgggtgaaaaattcttcggcaatttc |
699362 |
T |
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| Q |
106 |
ccttttccttacacgaatggttgccttcatttaggccatgcattttctctttccaagttggaattcgcagcggctttttaccgattgagaggcaccaatg |
205 |
Q |
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| T |
699363 |
ccttttccttacacgaatggttaccttcatttaggccatgcattttctctttccaagttggaattcgcagcagctttttaccgattgagaggcgccaatg |
699462 |
T |
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| Q |
206 |
tgcttctgccatttgcctttcattgtaccggcatgccgatgaaagcttctgctgataaactccctagagaaattcaacaattcggaaacctacccgtgtt |
305 |
Q |
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| T |
699463 |
tgcttctgccatttgcctttcattgtaccggcatgccgatgaaaacttctgctgataaactcgctagagaaattcaacaattcggaaacccacccgtgtt |
699562 |
T |
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| Q |
306 |
cccgggggtacaagaagacaatgccatgggcaccgagggtgctgccgacgatgattc |
362 |
Q |
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| T |
699563 |
cccgggggtacaagaagacaatgccatgggtgccgagggtgcttccgacgatgattc |
699619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 362
Target Start/End: Original strand, 697186 - 697527
Alignment:
| Q |
20 |
aaaaatggtgggaagagaaagatgttttcaaatcagaacctggtgaaaaccctccaaaaccgggtgaaaaattcttcggcaatttcccttttccttacac |
119 |
Q |
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| T |
697186 |
aaaattggtgggaagaggaagatgatttcatatcataacgcggttaaaaccctccaaaactaggtgaattgttttttggcaactttccttttccttacac |
697285 |
T |
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| Q |
120 |
gaatgg-ttgccttcatttaggccatgcattttctctttccaagttggaattcgcagcggctttttaccgattgagaggcaccaatgtgcttctgccatt |
218 |
Q |
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| T |
697286 |
gaatggtttaccttcatttaggccatgtatcttctctgtccaagttggaattcattgcggc-tatcaccgatttagaggcgccaatgtgcttccattgtc |
697384 |
T |
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| Q |
219 |
tgcctttcattgtaccggcatgccgatgaaagcttctgctgataaactccctagagaaattcaacaattcggaaacctacccgtgttcccgggggtacaa |
318 |
Q |
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| T |
697385 |
tgcctttcattgca-cgatatgtctatcaaagcctctgtcgataaactcgttagagaaattcaacagttcgacaaccctcctgtgttcccctgcgcacaa |
697483 |
T |
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| Q |
319 |
gaagacaatgccatgggcaccgagggtgctgccgacgatgattc |
362 |
Q |
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| T |
697484 |
gaagaaaatgttgttggcactgagggtgctgtcgtcgatgattc |
697527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 23262867 - 23262594
Alignment:
| Q |
11 |
caaaggttaaaaaatggtgggaagagaaagatgttttcaaatcagaacctggtgaaaaccctccaaaaccgggtgaaaaattcttcggcaatttcccttt |
110 |
Q |
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|||| ||| |||||||||||||||||||| | ||||||||||| ||||| ||| | || || || || ||||||||||||||||| ||||||||||| |
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| T |
23262867 |
caaaagttcaaaaatggtgggaagagaaacaagttttcaaatctgaacccggtaacaaaccacctcaagaaggtgaaaaattcttcgggaatttcccttt |
23262768 |
T |
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| Q |
111 |
tccttacacgaatggttgccttcatttaggccatgcattttctctttccaagttggaattcgcagcggctttttaccgattgagaggcaccaatgtgctt |
210 |
Q |
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| T |
23262767 |
tccttatatgaacggttacttacatttaggtcatgctttttcgctttccaaacttgaatttgctgcggcgtttcatcgtcttcgcggcgcgaatgttctt |
23262668 |
T |
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| Q |
211 |
ctgccatttgcctttcattgtaccggcatgccgatgaaagcttctgctgataaactccctagagaaattcaaca |
284 |
Q |
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|||||||||| ||||||||||| || ||||| || || |||||||||||||| || ||||||| |||||||| |
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| T |
23262667 |
ttgccatttgcttttcattgtactggtatgcctattaaggcttctgctgataagcttgctagagagattcaaca |
23262594 |
T |
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