View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12057_low_14 (Length: 354)

Name: NF12057_low_14
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12057_low_14
NF12057_low_14
[»] chr3 (7 HSPs)
chr3 (30-339)||(21853475-21853784)
chr3 (107-215)||(21831741-21831849)
chr3 (159-287)||(21839318-21839446)
chr3 (167-287)||(21857412-21857532)
chr3 (56-105)||(13810597-13810646)
chr3 (32-105)||(21852323-21852396)
chr3 (56-100)||(46993326-46993370)
[»] scaffold0181 (2 HSPs)
scaffold0181 (30-105)||(15884-15959)
scaffold0181 (32-105)||(15078-15151)
[»] chr4 (1 HSPs)
chr4 (31-81)||(37114570-37114620)
[»] chr2 (1 HSPs)
chr2 (28-99)||(45548091-45548161)
[»] chr1 (1 HSPs)
chr1 (28-80)||(46827869-46827921)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 30 - 339
Target Start/End: Original strand, 21853475 - 21853784
Alignment:
Q  30 ctttatttgatcaaatggttaatattaacttttctatggtgggaaagttttactatttctcatgttaaatgtcaccccaaataaaacatctaataataga 129  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||  ||||||||||| ||||||||||||||||||||||||||||    
T  21853475 ctttatttgatcaaatggttaatattaatttttctatggtgggaaagttttacccttttccatgttaaatgccaccccaaataaaacatctaataataga 21853574  T
Q  130 aatagaacaataattctcatcaaaactcatttaacatgtccattttatatgttcatgtgctttttcaaattttttgctggtcccttcactttatcgtcat 229  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21853575 aatagaacaataattctcatcaaaactcgtttaacatgtccattttatatgttcatgtgctttttcaaattttttgctggtcccttcactttatcgtcac 21853674  T
Q  230 atccagtggtgtatccatgatcctagttcaaagggtgcatactttttcgtccaacaaatttaatacccattttggagtatccatttatgaattatatcca 329  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  21853675 atccagtggtgtatccatgaccctagttcaaagggtgcatactttttcgtccaacaaatttaatacccattttggagtatccatttatgaattataccca 21853774  T
Q  330 ggtgcctatg 339  Q
     |||||||||    
T  21853775 agtgcctatg 21853784  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 21831741 - 21831849
Alignment:
Q  107 caaataaaacatctaataatagaaatagaacaataattctcatcaaaactcatttaacatgtccattttatatgttcatgtgctttttcaaattttttgc 206  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||  |||||| |||| ||||||||||||||||||||||||||||||||| |     
T  21831741 caaataaaacatctaataatagaaatagaacaacggttctcatcaaaacttgtttaacgtgtcaattttatatgttcatgtgctttttcaaatttttggt 21831840  T
Q  207 tggtccctt 215  Q
    |||||||||    
T  21831841 tggtccctt 21831849  T

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Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 159 - 287
Target Start/End: Original strand, 21839318 - 21839446
Alignment:
Q  159 tttaacatgtccattttatatgttcatgtgctttttcaaattttttgctggtcccttcactttatcgtcatatccagtggtgtatccatgatcctagttc 258  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| ||| |||||  ||||||||| ||| | ||    
T  21839318 tttaacaagtccattttatatgttcatgtgctttttcaaattttttgttggacccttcactttatcatcacatctagtggcatatccatgaccctggatc 21839417  T
Q  259 aaagggtgcatactttttcgtccaacaaa 287  Q
     | |||| |||||||||||||||||||||    
T  21839418 tatgggttcatactttttcgtccaacaaa 21839446  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 167 - 287
Target Start/End: Original strand, 21857412 - 21857532
Alignment:
Q  167 gtccattttatatgttcatgtgctttttcaaattttttgctggtcccttcactttatcgtcatatccagtggtgtatccatgatcctagttcaaagggtg 266  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| ||| |||||  |||||| |||||| | || | ||||     
T  21857412 gtccattttatatgttcatgtgctttttcaatttttttgttggacccttcactttatcgtcacatctagtggcatatccacgatcctggatctatgggtt 21857511  T
Q  267 catactttttcgtccaacaaa 287  Q
    ||||||||||||| |||||||    
T  21857512 catactttttcgttcaacaaa 21857532  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 13810597 - 13810646
Alignment:
Q  56 aacttttctatggtgggaaagttttactatttctcatgttaaatgtcacc 105  Q
    |||||| |||| |||||||||||||||  |||| ||||||||||||||||    
T  13810597 aactttcctatcgtgggaaagttttaccctttcccatgttaaatgtcacc 13810646  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 21852396 - 21852323
Alignment:
Q  32 ttatttgatcaaatggttaatattaacttttctatggtgggaaagttttactatttctcatgttaaatgtcacc 105  Q
    |||||| |||| |||||||| || |||| | ||||||| | ||||||||||  |||| ||||||||||||||||    
T  21852396 ttatttaatcacatggttaaaatcaactgtcctatggtcgaaaagttttaccctttcccatgttaaatgtcacc 21852323  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 46993370 - 46993326
Alignment:
Q  56 aacttttctatggtgggaaagttttactatttctcatgttaaatg 100  Q
    |||||||| ||||||||||||||||||  |||| |||||||||||    
T  46993370 aacttttccatggtgggaaagttttacactttcccatgttaaatg 46993326  T

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Target: scaffold0181 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 15884 - 15959
Alignment:
Q  30 ctttatttgatcaaatggttaatattaacttttctatggtgggaaagttttactatttctcatgttaaatgtcacc 105  Q
    |||||||||||||||| ||||||||||||||| | || |||||||||||||||  |||| ||||||||||| ||||    
T  15884 ctttatttgatcaaatcgttaatattaactttcccatagtgggaaagttttaccctttcccatgttaaatgccacc 15959  T

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Target: scaffold0181; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 15151 - 15078
Alignment:
Q  32 ttatttgatcaaatggttaatattaacttttctatggtgggaaagttttactatttctcatgttaaatgtcacc 105  Q
    |||||| ||||||||| ||| || |||| | ||||||||||||||||||||  |||| ||||||||||| ||||    
T  15151 ttatttaatcaaatggctaaaatcaactgtcctatggtgggaaagttttaccctttcccatgttaaatgccacc 15078  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 37114570 - 37114620
Alignment:
Q  31 tttatttgatcaaatggttaatattaacttttctatggtgggaaagtttta 81  Q
    |||||| |||||||||||||| ||| |||||| ||||||||||||||||||    
T  37114570 tttattagatcaaatggttaaaattgacttttttatggtgggaaagtttta 37114620  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 45548091 - 45548161
Alignment:
Q  28 ttctttatttgatcaaatggttaatattaacttttctatggtgggaaagttttactatttctcatgttaaat 99  Q
    |||||||||||||||||||| ||| ||||| |||| |||||||||||| |||||   ||| |||||||||||    
T  45548091 ttctttatttgatcaaatggataaaattaa-ttttttatggtgggaaacttttaacctttttcatgttaaat 45548161  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 46827921 - 46827869
Alignment:
Q  28 ttctttatttgatcaaatggttaatattaacttttctatggtgggaaagtttt 80  Q
    |||||||||| ||| ||||||||| ||||  ||||||||||| ||||||||||    
T  46827921 ttctttatttaatctaatggttaaaattagtttttctatggtaggaaagtttt 46827869  T

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