View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12057_low_15 (Length: 345)
Name: NF12057_low_15
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12057_low_15 |
 | |
|
| [»] scaffold0191 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0191 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 5 - 329
Target Start/End: Original strand, 31435 - 31759
Alignment:
| Q |
5 |
ttaaattattagcggtgtcagtgtatgtgtcgtgtctggtgttcgtgtccgcatacgtgcatcatagaccaggacatatattatcccacactagcagcaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31435 |
ttaaattattagcggtgtcagtgtatgtgtcgtgtctggtgttcgtgtccgcatacgtgcatcatagaccaggacatatattatcccacactagcagcaa |
31534 |
T |
|
| Q |
105 |
ccaagcaacgtccaatcactgatcattatcatgttcataatcgaaataaaaatcattataaaataacagatttggggccattacagtaacacacagatta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31535 |
ccaagcaacgtccaatcactgatcattatcatgttcataatcgaaataaaaatcattataaaataacagatttggggccattacagtaacacacagatta |
31634 |
T |
|
| Q |
205 |
tcatttgatactaatcaatttttatcataatcattataaaaccaagcaataaaaattaaattataaggttaatgaattcaataatgagaatgagagttac |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31635 |
tcatttgatactaatcaatttttatcataatcattataaaaccaagcaataaaaattaaattataaggttaatgaattcaataatgagaatgagagttac |
31734 |
T |
|
| Q |
305 |
cttgagggggtaaaggtttaataac |
329 |
Q |
| |
|
||||||||| ||||||||| ||||| |
|
|
| T |
31735 |
cttgaggggctaaaggtttcataac |
31759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 4157166 - 4157101
Alignment:
| Q |
7 |
aaattattagcggtgtcagtgtatgtgtcgtgtctggtgttcgtgtccgcatacgtgcatcataga |
72 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||| |||||||| || ||||| ||||||| |
|
|
| T |
4157166 |
aaattattagttgtgtcagtgtctgtgtcgtgtctggtgtccgtgtccgtatccgtgcttcataga |
4157101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 44860342 - 44860273
Alignment:
| Q |
1 |
tttcttaaattattagcggtgtcagtgtatgtgtcgtgtctggtgttcgtgtccgcatacgtgcatcata |
70 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||| ||| |||| || ||||| ||||| |
|
|
| T |
44860342 |
tttctcaaattattagcggtgtcagtgtccgtgtcgtgtctggtgtacgtatccgtatccgtgcttcata |
44860273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 12826402 - 12826446
Alignment:
| Q |
257 |
aaattaaattataaggttaatgaattcaataatgagaatgagagt |
301 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| |||||| |
|
|
| T |
12826402 |
aaattaaattataaggttaatgaattctacaatgagaacgagagt |
12826446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 322541 - 322500
Alignment:
| Q |
1 |
tttcttaaattattagcggtgtcagtgtatgtgtcgtgtctg |
42 |
Q |
| |
|
|||||||||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
322541 |
tttcttaaattattagtggtgtcggtgtctgtgtcgtgtctg |
322500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14155276 - 14155321
Alignment:
| Q |
1 |
tttcttaaattattagcggtgtcagtgtatgtgtcgtgtctggtgt |
46 |
Q |
| |
|
||||| ||||||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
14155276 |
tttctcaaattatgatcggtgtcagtgtctgtgtcgtgtctggtgt |
14155321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 24413624 - 24413676
Alignment:
| Q |
20 |
tgtcagtgtatgtgtcgtgtctggtgttcgtgtccgcatacgtgcatcataga |
72 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||| || ||||| ||||||| |
|
|
| T |
24413624 |
tgtcagtgtccgtgtcgtgtctggtgtccgtgtccgtatccgtgcttcataga |
24413676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University