View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12057_low_17 (Length: 290)
Name: NF12057_low_17
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12057_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 46042168 - 46041898
Alignment:
| Q |
11 |
agcagagaaatatgatcatctatcaaaggagctacaaagcgcgaaccgcacaattgccaccgtttttcctgaacaagtccattatagaatagacgaagat |
110 |
Q |
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| T |
46042168 |
agcagagaaatatgatcatctatcaaaggagctacaaagcgcgaaccgcacaattgccaccgtttttcctgaacaagtccattatagaatagacgaagat |
46042069 |
T |
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| Q |
111 |
gaagatgaagaaagtgtccctgaaactaattcattacctcctaaccctaataaccaaacagaaaaacaacgcaacatccctaaacctccaagtatcccaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46042068 |
gaagatgaagaaagtgtccctgaaactaattcattacctcctaaccctaataaccaaacagaaaaacaatgcaacatccctaaacctccaagtatcccaa |
46041969 |
T |
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| Q |
211 |
agaaggtttttcgaagtcagtctatgttgctatcaagaaaaggaacacatagaagaagtgtcagatcggaa |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46041968 |
agaaggtttttcgaagtcagtctatgttgctatcaagaaaaggaacacatagaagaagtgtcagctcggaa |
46041898 |
T |
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