View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12057_low_18 (Length: 272)
Name: NF12057_low_18
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12057_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 31188858 - 31188603
Alignment:
| Q |
1 |
gattaagtcataaccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaannnnnnnnnnaggt |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31188858 |
gattaagtcatatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaattttttttttaggt |
31188759 |
T |
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| Q |
101 |
gatctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagtttttgtgatgtttttgtttctgtttcgg |
200 |
Q |
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| T |
31188758 |
gatctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagtttttgtgatgtttttgtttctgtttcgg |
31188659 |
T |
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| Q |
201 |
tgctgccttgcatattctttttgtgcttcatgtttctgtgttcctagtatcttttg |
256 |
Q |
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| T |
31188658 |
tgctgccttgcatattctttttgtgcttcatgtttctgtgttcctagtatcttttg |
31188603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31200665 - 31200445
Alignment:
| Q |
1 |
gattaagtcataaccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaannnnnnnnnnaggt |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31200665 |
gattaagtcatatccttaatatgtgtaatgaaaatattaggtatatgattaaaatattcatattctccaaaaataatagcatcgaattttttttttaggt |
31200566 |
T |
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| Q |
101 |
gatctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagtttttgtgatgtttttgtttctgtttcgg |
200 |
Q |
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| T |
31200565 |
gatctaatattttaacttgtctactattatatatgtgatgcccctcttcttttggtgctttgcattggcagtttttgtgatgtttttgtttctgtttcgg |
31200466 |
T |
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| Q |
201 |
tgctgccttgcatattctttt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
31200465 |
tgctgccttgcatattctttt |
31200445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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