View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12057_low_2 (Length: 657)
Name: NF12057_low_2
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12057_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 109 - 638
Target Start/End: Complemental strand, 33761000 - 33760456
Alignment:
| Q |
109 |
ggagtataagagaga--tattagaatgttacaaatttaattggttacatgcctttacctaccgactgtacttctaactcaaatttgacaatgcaacatat |
206 |
Q |
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| T |
33761000 |
ggagtataagaaagaaatattagaatgttacaaatttaattggttacatgcctcaacctaccgaccgtacttctaactcaaatttgacaatgcaacatat |
33760901 |
T |
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| Q |
207 |
-------------gccaatattgaccaatctattgacttttcttctttttattgtctatatatactctaggataaggatggtgaaaacaatattaagcag |
293 |
Q |
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| T |
33760900 |
tttgtcaacatatgccaatatcgaccaatctattgacttttcttctttttattgtcgatatatactctaggataaggatggtgaaaacaatattaagcag |
33760801 |
T |
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| Q |
294 |
caatattttatattataccacaacaacaataatcattatgagtacacaaaatttaattgctaggaagcattatgttcttgtacatggtgcttgccatggt |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33760800 |
caatattttatattataccacaacaacaataatcattatgagtacacaaaatttaattgctaggaagcattatgttcttgtacatggtgcttgccatggt |
33760701 |
T |
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| Q |
394 |
gcttggagttggtacaagatcaagccacgtttagaatctgctggtcatgtggtcacagtaattgacctttcagcttctggaaccaacttgaagaaacttg |
493 |
Q |
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| T |
33760700 |
gcttggagttggtacaagatcaagccacgtttagaatctgctggtcatgtggttacagtacttgacctttcagcttctggaaccaacttgaagaaacttg |
33760601 |
T |
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| Q |
494 |
aagatgttgatacaatttcagaatactctgaaacattgttgaagctaatggcaacaattccacaaaatgaaaaggtgattcttgtgggtcatagtcttgg |
593 |
Q |
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| T |
33760600 |
aagatgttgatacaatttcagaatactctgaaccattgttgaagctaatggcaacaattccgcaaaatgaaaaggtgattcttgtgggtcatagtcttgg |
33760501 |
T |
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| Q |
594 |
aggacttagcatagctcttgcaatggaacaatttccagaaaaggt |
638 |
Q |
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| T |
33760500 |
aggacttagcatagctcttgcaatggaacaatttccagaaaaggt |
33760456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 33762856 - 33762803
Alignment:
| Q |
10 |
gagatgaaaagagagaataagaacacaataaaaatactccatacatttcaaaat |
63 |
Q |
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| T |
33762856 |
gagatgaaaggagagaataagaacacaataaaagtactccatacatttcaaaat |
33762803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 562 - 596
Target Start/End: Complemental strand, 1777483 - 1777449
Alignment:
| Q |
562 |
gaaaaggtgattcttgtgggtcatagtcttggagg |
596 |
Q |
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| T |
1777483 |
gaaaaggtgattcttgtgggtcatagttttggagg |
1777449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 635
Target Start/End: Original strand, 6842354 - 6842431
Alignment:
| Q |
558 |
aaatgaaaaggtgattcttgtgggtcatagtcttggaggacttagcatagctcttgcaatggaacaatttccagaaaa |
635 |
Q |
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| T |
6842354 |
aaatgaaaaagtggttcttgttggacatagctttggaggaatgagtatagctcttgcaatggaaaaatttcctgaaaa |
6842431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 440
Target Start/End: Original strand, 6832925 - 6833005
Alignment:
| Q |
360 |
gcattatgttcttgtacatggtgcttgccatggtgcttggagttggtacaagatcaagccacgtttagaatctgctggtca |
440 |
Q |
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| T |
6832925 |
gcattttgttctggtacatggttctggcatgggtgcctggaattggtacaagcttaagccacgtttagaatcatctggtca |
6833005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 433
Target Start/End: Original strand, 6842153 - 6842229
Alignment:
| Q |
357 |
gaagcattatgttcttgtacatggtgcttgccatggtgcttggagttggtacaagatcaagccacgtttagaatctg |
433 |
Q |
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| T |
6842153 |
gaagcattttgttctagtacatggtgttagcgttggagcttggagttggtacaagcttaaaccacagttagaatctg |
6842229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 47682799 - 47682766
Alignment:
| Q |
43 |
atactccatacatttcaaaatataaacaaatttt |
76 |
Q |
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| T |
47682799 |
atactccatacgtttcaaaatataaacaaatttt |
47682766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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