View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12057_low_21 (Length: 261)
Name: NF12057_low_21
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12057_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 251
Target Start/End: Original strand, 31265525 - 31265759
Alignment:
| Q |
17 |
aataaaaaagcatagatgttactgaaaaggagttttaagaaactacgttgatataaaacatagattaaggaattttgaatagctttcatgtcaatcaagt |
116 |
Q |
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| T |
31265525 |
aataaaaaagcatagatgttactgaaaaggagttttaagaaactacgttgatataaaacatagattaaggaattttgaatagctttcatgtcaatcaagt |
31265624 |
T |
|
| Q |
117 |
caacattaaacttttgcttatgatctgaagaaactggcccaacatagacttagtacattttgaagaataaatcatttttaaatactaaccaaatactagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31265625 |
caacattaaacttttgcttatgatctgaagaaactggcccaacatagacttagtacattttgaagaataaatcatttttaaatactaaccaaatactagt |
31265724 |
T |
|
| Q |
217 |
ttttgaactcgaagagctataacaactaatccaat |
251 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
31265725 |
ttttgaactcgaagagctataacaactaatccaat |
31265759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 31254067 - 31254246
Alignment:
| Q |
30 |
agatgttactgaaaaggagttttaagaaactacgttgatataaaacatagattaaggaattttgaat-agctttcatgtcaatcaagtcaacattaaact |
128 |
Q |
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|||| |||||||||| ||| |||| |||| || ||||||||| || ||| | | | ||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
31254067 |
agatattactgaaaaagagctttacgaaattatgttgatatagaaaatacaatgaagaattttgaattagctttcatgtcaatcaagtcaacattaaagt |
31254166 |
T |
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| Q |
129 |
tttgcttatgatctgaagaaactggcccaacatagacttagtacattttgaagaataaatcatttttaaatactaaccaa |
208 |
Q |
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| T |
31254167 |
tttgcttatgatcacaaaaacgcagcccaatatagacttagtgcatttaaaagagtatataacttttaagtactaaccaa |
31254246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 31237449 - 31237565
Alignment:
| Q |
30 |
agatgttactgaaaaggagttttaagaaactacgttgatataaaacatagat----taaggaattttgaat-agctttcatgtcaatcaagtcaacatta |
124 |
Q |
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|||| |||||||||| ||| ||||||||| ||||||| |||| || |||||| ||| ||||||||||| ||||||||||||||| |||||||||||| |
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| T |
31237449 |
agatattactgaaaaagagctttaagaaattacgttggtatagaaaatagatacaataaagaattttgaattagctttcatgtcaattaagtcaacatta |
31237548 |
T |
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| Q |
125 |
aacttttgcttatgatc |
141 |
Q |
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| T |
31237549 |
aagttttgcttttgatc |
31237565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 14732647 - 14732817
Alignment:
| Q |
17 |
aataaaaaagcatagatgttactgaaaaggagttttaagaaactacgttgatat-aaaacatagattaaggaattttgaat-agctttcatgtcaatcaa |
114 |
Q |
| |
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|||| ||||| | |||| |||||||||| ||| ||||||||| || |||||||| |||| ||| ||||| ||||||||||| |||||||||||||||||| |
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| T |
14732647 |
aatacaaaagtaaagatattactgaaaaagagctttaagaaattatgttgatatcaaaaaatacattaaagaattttgaattagctttcatgtcaatcaa |
14732746 |
T |
|
| Q |
115 |
gtcaacattaaacttttgcttatgatctgaagaaactggcccaacatagacttagtacattttgaagaata |
185 |
Q |
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|||||||||||| |||||||||||||| || || |||||||| ||||||||||| ||||| ||||||| |
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|
| T |
14732747 |
gtcaacattaaagctttgcttatgatctcaaaaacatggcccaatatagacttagtgcatttaaaagaata |
14732817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 16133076 - 16132880
Alignment:
| Q |
17 |
aataaaaaagcatagatgttactgaaaaggagttttaagaaactacgttgatataaaaca-tagattaaggaattttgaat-agctttcatgtcaatcaa |
114 |
Q |
| |
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|||||||||| | |||| |||| ||| | ||| ||| ||||| || |||||||||||||| || | ||| ||||||||||| |||||||||||||||||| |
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| T |
16133076 |
aataaaaaagtaaagatattaccgaacaagagctttgagaaattatgttgatataaaacaatacagtaaagaattttgaattagctttcatgtcaatcaa |
16132977 |
T |
|
| Q |
115 |
gtcaacattaaacttttgcttatgatctgaagaaactggcccaacatagacttagtacattttgaagaataaatcatttttaaatactaaccaaata |
211 |
Q |
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|||||||||||| |||| | |||||||| || || ||| ||| ||||||||||| ||||| ||||||| || | ||||| ||||||||||||| |
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| T |
16132976 |
gtcaacattaaagtttttcatatgatctcaaaaacacggcacaatatagacttagtgcatttaaaagaatacataacttttatgtactaaccaaata |
16132880 |
T |
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