View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12057_low_22 (Length: 254)
Name: NF12057_low_22
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12057_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 48082273 - 48082499
Alignment:
| Q |
18 |
cactgaacaattttaaatagcataatatatttaagtatcatgcaatgacagtatagtgatgctataaaaacgaaatcgtaacaaacaaagttgcagaagt |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
48082273 |
cactgaacaattctaaatagcataatatatttaagtatcatgcaatgacagtatagtgatgctataaaaacgaaatggtaacaaacaaagttgcagaagt |
48082372 |
T |
|
| Q |
118 |
ggcttgacaacaaagctggcagaacataactctaccattctatttgcctcaaatgtacatataataacagccctcctagctatttttgaacacattgacg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48082373 |
ggcttgacaacaaagctggcagaacataactctaccattctatttgcctcaaatgtacatataataacagccctcctagctatttttgaacacattgacg |
48082472 |
T |
|
| Q |
218 |
tcaactgtttttagatctacacctatg |
244 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
48082473 |
tcaactgtttttagatctacacttatg |
48082499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University