View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12057_low_25 (Length: 226)
Name: NF12057_low_25
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12057_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 31266102 - 31266294
Alignment:
| Q |
1 |
gtcaggtgttaaaagtaagaaaaaccactctaaacaattaacagttccatttccaagccaacagagtttgtccaataaaacaaattgattccgaccagtc |
100 |
Q |
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| T |
31266102 |
gtcaggtgttaaaagtaagaaaaaccactctaaacaattaacagttccatttccaagccaacagagtttgtccaataaaacaaattgattccgactagtc |
31266201 |
T |
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| Q |
101 |
atagtagtcttattagtggagcaatttatttcatcaaccatactttaatattatggaatgaagttaaattagtaaattgagaacccctttaaa |
193 |
Q |
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| T |
31266202 |
atagtagtcttattagtggagcaatttatttcatcaaccatactttaatattatggaatgaagttaaattagtaaattgaaaacccctttaaa |
31266294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 180
Target Start/End: Original strand, 31238239 - 31238321
Alignment:
| Q |
97 |
agtcatagtagtcttattagtggagcaatttatttcatcaaccatactttaatattatggaatgaagttaaattagtaaattga |
180 |
Q |
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| T |
31238239 |
agtcatagtagtcttactagtgaagctacttatttcatcaaccacacgtttatattatgcaatgaagtt-aattagtaaattga |
31238321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 31238129 - 31238210
Alignment:
| Q |
11 |
aaaagtaagaaaaaccactctaaacaatta-acagttccatttccaagccaacagagtttgtccaataaaacaaattgattc |
91 |
Q |
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| T |
31238129 |
aaaagtaagaacaaccacactaaacacttagacaatttcatttcccagcaaactgagtttgtccaataaaataaatggattc |
31238210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 31254768 - 31254834
Alignment:
| Q |
114 |
tagtggagcaatttatttcatcaaccatactttaatattatggaatgaagttaaattagtaaattga |
180 |
Q |
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| T |
31254768 |
tagtgaagctatttatttcatcaaccacccttttatactacgcaatgaagttgaattagtaaattga |
31254834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 14733403 - 14733450
Alignment:
| Q |
44 |
gttccatttccaagccaacagagtttgtccaataaaacaaattgattc |
91 |
Q |
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| T |
14733403 |
gttccatttcccagcaaacagagtttgtccaataaaataaattgattc |
14733450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 16132267 - 16132210
Alignment:
| Q |
124 |
atttatttcatcaaccatactttaatattatggaatgaagttaaattagtaaattgag |
181 |
Q |
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| T |
16132267 |
atttatttcgtcaaccacacttttatattacagaatgaagttaaattagtaaactgag |
16132210 |
T |
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