View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12057_low_3 (Length: 555)
Name: NF12057_low_3
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12057_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4368752 - 4368516
Alignment:
| Q |
1 |
aagatgaagatgaagatgaagatggagatgaaaattaaatggaagattatgtttttattttgaaagcattctagattaaagatctagaatttgactcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4368752 |
aagatgaagatgaagatgaagatggagatgaaaattaaatggaagattatgtttttattttgaaagcattctagattaaagatctagaatttgactcctt |
4368653 |
T |
|
| Q |
101 |
gttttgggtgtttacatcataccacttgttaaaagcttaatattatagcttaagttgttaatttgtgacttatcagttgtgtatgactttcctatggatt |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4368652 |
gttttgggtgtttacatcataccacttgtgaaaagcttaatattatagcttaagttgttaatttgtgacttatcagttgtgtatgactttcctatggatt |
4368553 |
T |
|
| Q |
201 |
ttgaattaagtttagtgtattgtctgaagtgattttc |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
4368552 |
ttgaattaagtttagtgtattgtctgaagtgattttc |
4368516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 296 - 540
Target Start/End: Complemental strand, 4368457 - 4368213
Alignment:
| Q |
296 |
tgtgaattttgtaggattttgctatcctggtctaatcttcattttgatgacatgttcattttcttatttgcactcaccttggaatagtcgggataaattg |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4368457 |
tgtgaattttgtaggattttgctatcctggtctaatcttcattttgatgacatgttcattttcttatttgcactcaccttggaatagtcgggataagttg |
4368358 |
T |
|
| Q |
396 |
atcactggtattgttgaacaaaaaacatgcgaagaaaagaatcatggattcattcaggtgtgagacactgacagctgagaatgcagctgacaaccacatc |
495 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4368357 |
atcactggtattgttgaacaaaaaacattcgtagaaaagaatcatggattcattcaggtgtgagacactgacagctgagaatgcagctgacaaccacatc |
4368258 |
T |
|
| Q |
496 |
aggcagttgttcatgccaaaactagctgggatagatggcgttggt |
540 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4368257 |
aggcagttgttcatgccaaaactagctgggatagatggtgttggt |
4368213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 329 - 531
Target Start/End: Complemental strand, 4363988 - 4363788
Alignment:
| Q |
329 |
aatcttcattttgatgacatgttcattttcttatttgcactcaccttggaatagtcgggataaattgatcactggtattgttgaacaaaaaacatgcgaa |
428 |
Q |
| |
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|||||||||||| || ||||||||||||| ||||||||| ||||||| || |||||||||||| |||||||| ||||| |||||||||||| |||| ||| |
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| T |
4363988 |
aatcttcattttaatcacatgttcattttattatttgca-tcacctttgagtagtcgggataagttgatcacaggtatggttgaacaaaaa-catgggaa |
4363891 |
T |
|
| Q |
429 |
gaaaagaatcatggattcattcaggtgtgagacactgacagctgagaatgcagctgacaaccacatcaggcagttgttcatgccaaaactagctgggata |
528 |
Q |
| |
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|||||||| || || ||||| || |||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
4363890 |
gaaaagaaccacggtttcatccaagtgtgagacactgaaagctgagaatgcagctgatgaccacatcaggcagttgttcttgccaaaactagctgggata |
4363791 |
T |
|
| Q |
529 |
gat |
531 |
Q |
| |
|
||| |
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|
| T |
4363790 |
gat |
4363788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 4364357 - 4364127
Alignment:
| Q |
8 |
agatgaagatgaagatggagatgaaaattaaatggaagattat-gtttttattttgaaag-cattctagattaaagatctagaatttgactccttgtttt |
105 |
Q |
| |
|
||||||||||| | ||| ||||||||||||||||||||||||| ||||||| ||||||| | ||||| ||||| |||||| ||||||||||||||||| |
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| T |
4364357 |
agatgaagatggatatgaagatgaaaattaaatggaagattattgtttttaatttgaaaaactttctaatttaaatatctagtatttgactccttgtttt |
4364258 |
T |
|
| Q |
106 |
gggtgtttacatcataccacttgttaaaagcttaatattatagcttaagttgttaatttgtgacttatcagttgtgtatgactttcctatggattttgaa |
205 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||||||| | |||||||||| ||||||||||||||| | |||||||||| || ||||||| |||||| |
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| T |
4364257 |
gggtgtttgcatcttgccacttgttaaaagcttaatactcaagcttaagtttgtaatttgtgacttatgaattgtgtatgaattacctatgg-gtttgaa |
4364159 |
T |
|
| Q |
206 |
ttaagtttagtgtattgtctgaagtgattttc |
237 |
Q |
| |
|
|||||| ||||||| |||||| ||| |||||| |
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| T |
4364158 |
ttaagtgtagtgtactgtctgtagtaattttc |
4364127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 359 - 540
Target Start/End: Complemental strand, 4358600 - 4358427
Alignment:
| Q |
359 |
ttatttgcactcaccttggaatagtcgggataaattgatcactggtattgttgaacaaaaaacatgcgaagaaaagaatcatggattcattcaggtgtga |
458 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| |||||||| ||||| |||||||||||| |||| || ||||||||||| || |||||||| | |
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| T |
4358600 |
ttatttgcattcacctttgaatagtcgggataagttgatcacaggtatggttgaacaaaaa-catgggacgaaaagaatcacggtttcattca------a |
4358508 |
T |
|
| Q |
459 |
gacactgacagctgagaatgcagctgacaaccacatcaggcagttgttcatgccaaaactagctgggatagatggcgttggt |
540 |
Q |
| |
|
|||||| | ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| |||||| |
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| T |
4358507 |
gacactca-agctgagaatgcagctgacgaccacatcaggcagttgttctagccaaaactagctgggatggatggtgttggt |
4358427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 72 - 237
Target Start/End: Complemental strand, 4358917 - 4358751
Alignment:
| Q |
72 |
tagattaaagatctagaatttgactccttgttttgggtgtttacatcataccacttgttaaaagctt-aatattatagcttaagttgttaatttgtgact |
170 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| | | | |||||| ||||||||| |||| |||||||||||||||||| || ||||| |
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|
| T |
4358917 |
tagattaaatatctagaatttgactccttgttttgggtgtttagagcttgtcacttgctaaaagcttaaatactatagcttaagttgttaa-ttctgact |
4358819 |
T |
|
| Q |
171 |
tatcagttgtgtatgactttcctatggattttgaa-ttaagtttagtgtattgtctgaagtgattttc |
237 |
Q |
| |
|
||| | ||||||| ||||||||||||| ||| ||| ||||||| |||||| ||| || ||||||||| |
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|
| T |
4358818 |
tatgaattgtgtacgactttcctatgggtttcgaatttaagttcagtgtagtgtttgttgtgattttc |
4358751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 296 - 375
Target Start/End: Complemental strand, 4358697 - 4358618
Alignment:
| Q |
296 |
tgtgaattttgtaggattttgctatcctggtctaatcttcattttgatgacatgttcattttcttatttgcactcacctt |
375 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| |
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|
| T |
4358697 |
tgtgaattttataggattttgctatcctggtataatcttcattttgatgacatgttcattttattatttgcattcacctt |
4358618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 362 - 532
Target Start/End: Original strand, 4417740 - 4417906
Alignment:
| Q |
362 |
tttgcactcaccttggaatagtcgggataaattgatcactggtattgttgaacaaaaaacatgcgaagaaaagaatcatggattcattcaggtgtgagac |
461 |
Q |
| |
|
|||||| ||||||| || ||| ||||||| |||||| ||||| ||||||||||| ||| |||||||||||||| | |||||| ||||||||| |
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|
| T |
4417740 |
tttgcattcaccttttaacagttgggataaggagatcacaggtatggttgaacaaaagg-atgggaagaaaagaatcacagtttcatttgagtgtgagac |
4417838 |
T |
|
| Q |
462 |
actgacagctgagaatgcagctgacaaccacatcaggcagttgttcatgccaaaactagctgggatagatg |
532 |
Q |
| |
|
||||| ||||||| |||||||||| ||||||||||| | |||||||||||||||||||||||| |||| |
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|
| T |
4417839 |
actgaaagctgaggatgcagctgaagaccacatcaggaa---gttcatgccaaaactagctgggatggatg |
4417906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 214
Target Start/End: Complemental strand, 4388491 - 4388401
Alignment:
| Q |
124 |
acttgttaaaagcttaatattatagcttaagttgttaatttgtgacttatcagttgtgtatgactttcctatggattttgaattaagttta |
214 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | | |||||||||||||| | |||||| || ||||| ||||| |||||| ||||||||| |
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|
| T |
4388491 |
acttgttaaaagcttaatactatagcttaaggtatgaatttgtgacttatgaattgtgtttggctttcttatgggttttgagttaagttta |
4388401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 7555893 - 7555934
Alignment:
| Q |
146 |
tagcttaagttgttaatttgtgacttatcagttgtgtatgac |
187 |
Q |
| |
|
||||||||||| ||||||| |||||||| ||||||||||||| |
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|
| T |
7555893 |
tagcttaagttcttaatttttgacttatgagttgtgtatgac |
7555934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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