View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12057_low_4 (Length: 552)
Name: NF12057_low_4
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12057_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 189 - 536
Target Start/End: Complemental strand, 21665723 - 21665376
Alignment:
| Q |
189 |
gatacattaaagctctcgcatacatacagtctgaaaaagaatttcatcatttgatgtattgtacacagtcttatcaatctctttactaaagagactattt |
288 |
Q |
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|||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21665723 |
gatatattaaagctctcgcatacgtacaatctgaaaaagaattttatcatttgatgtattgtacacagtcttatcaatctctttactaaacagactattt |
21665624 |
T |
|
| Q |
289 |
ctaaaacttaaactcgtgacatttgagtcacatcacaacaactctacggttgcaccaaatcacacgaatacaaacataaaagtgaaaataagttgtctaa |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21665623 |
ctaaaacttaaactcgtgacatttgagtcacatcacaataactctaccgttgcaccaaatcacacgaatacaaacataaaagtgaaaataagttgtctaa |
21665524 |
T |
|
| Q |
389 |
tttataaaatagaattaaagattaattacctttgtgagcatgttgacgcctgcctttgaacaagcatatgcagttccaccgggcaattgccccctctcta |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21665523 |
tttataaaatagaattaaagattaattacctttgtgagcatgttgacgccagcctttgaacaagcatatgcagttccaccgggcaattgccccctctcta |
21665424 |
T |
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| Q |
489 |
ggccagcaattgaagagatattgataattgatcctttcctctttgaat |
536 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21665423 |
ggccagcaattgaagagatattgataattgatcctttcctctttgaat |
21665376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 189 - 536
Target Start/End: Complemental strand, 21674487 - 21674140
Alignment:
| Q |
189 |
gatacattaaagctctcgcatacatacagtctgaaaaagaatttcatcatttgatgtattgtacacagtcttatcaatctctttactaaagagactattt |
288 |
Q |
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|||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21674487 |
gatatattaaagctctcgcatacgtacaatctgaaaaagaattttatcatttgatgtattgtacacagtcttatcaatctctttactaaacagactattt |
21674388 |
T |
|
| Q |
289 |
ctaaaacttaaactcgtgacatttgagtcacatcacaacaactctacggttgcaccaaatcacacgaatacaaacataaaagtgaaaataagttgtctaa |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21674387 |
ctaaaacttaaactcgtgacatttgagtcacatcacaataactctaccgttgcaccaaatcacacgaatacaaacataaaagtgaaaataagttgtctaa |
21674288 |
T |
|
| Q |
389 |
tttataaaatagaattaaagattaattacctttgtgagcatgttgacgcctgcctttgaacaagcatatgcagttccaccgggcaattgccccctctcta |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21674287 |
tttataaaatagaattaaagattaattacctttgtgagcatgttgacgccagcctttgaacaagcatatgcagttccaccgggcaattgccccctctcta |
21674188 |
T |
|
| Q |
489 |
ggccagcaattgaagagatattgataattgatcctttcctctttgaat |
536 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21674187 |
ggccagcaattgaagagatattgataattgatcctttcctctttgaat |
21674140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 354 - 536
Target Start/End: Complemental strand, 21661021 - 21660839
Alignment:
| Q |
354 |
gaatacaaacataaaagtgaaaataagttgtctaatttataaaatagaattaaagattaattacctttgtgagcatgttgacgcctgcctttgaacaagc |
453 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21661021 |
gaatacaaacataaaaatgaaaatagtttgtctaatttataaattagatttaaagattaattacctttgtgagcatgttcacgcctgcctttgaacaagc |
21660922 |
T |
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| Q |
454 |
atatgcagttccaccgggcaattgccccctctctaggccagcaattgaagagatattgataattgatcctttcctctttgaat |
536 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
21660921 |
atatgcagttccaccgggcacttgccccctttctaggccagcaattgaagaaatattgataattgaccctttcctctttgaat |
21660839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 354 - 536
Target Start/End: Complemental strand, 21669785 - 21669603
Alignment:
| Q |
354 |
gaatacaaacataaaagtgaaaataagttgtctaatttataaaatagaattaaagattaattacctttgtgagcatgttgacgcctgcctttgaacaagc |
453 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21669785 |
gaatacaaacataaaaatgaaaatagtttgtctaatttataaattagatttaaagattaattacctttgtgagcatgttcacgcctgcctttgaacaagc |
21669686 |
T |
|
| Q |
454 |
atatgcagttccaccgggcaattgccccctctctaggccagcaattgaagagatattgataattgatcctttcctctttgaat |
536 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
21669685 |
atatgcagttccaccgggcacttgccccctttctaggccagcaattgaagaaatattgataattgaccctttcctctttgaat |
21669603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 21665802 - 21665720
Alignment:
| Q |
54 |
ttgatgaacattcacaacttgattaaaagaatcccattcatcacacatagcaacaagaattaatggatgtgagcttcttgata |
136 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21665802 |
ttgatgaatattcacaacttgattaaaagaatcccattcatcacacatagcaacaagaattaatggatgtgagcttcttgata |
21665720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 21674566 - 21674484
Alignment:
| Q |
54 |
ttgatgaacattcacaacttgattaaaagaatcccattcatcacacatagcaacaagaattaatggatgtgagcttcttgata |
136 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21674566 |
ttgatgaatattcacaacttgattaaaagaatcccattcatcacacatagcaacaagaattaatggatgtgagcttcttgata |
21674484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 21661375 - 21661328
Alignment:
| Q |
88 |
cattcatcacacatagcaacaagaattaatggatgtgagcttcttgat |
135 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
21661375 |
cattcatcacacatagcaacaagaattaatggttgttagcttcttgat |
21661328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 21670139 - 21670092
Alignment:
| Q |
88 |
cattcatcacacatagcaacaagaattaatggatgtgagcttcttgat |
135 |
Q |
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|
|||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
21670139 |
cattcatcacacatagcaacaagaattaatggttgttagcttcttgat |
21670092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 21665871 - 21665836
Alignment:
| Q |
21 |
attacaaaaagattaaccaatgtcagcatgcctttg |
56 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
21665871 |
attacaaaaagattaaccaatgtcagcatgcctttg |
21665836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 21674635 - 21674600
Alignment:
| Q |
21 |
attacaaaaagattaaccaatgtcagcatgcctttg |
56 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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|
| T |
21674635 |
attacaaaaagattaaccaatgtcagcatgcctttg |
21674600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 253
Target Start/End: Complemental strand, 21661299 - 21661206
Alignment:
| Q |
162 |
aaatattagaataaaggaaaacaacccgatacattaaagct--ctcgcatacatacagtctgaaaaagaatttcatcatttgatgtattgtaca |
253 |
Q |
| |
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|||||||||||||||||| ||||||| |||||| |||| || | || |||||| | ||| ||||||||| | ||||||||||||||| |||| |
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| T |
21661299 |
aaatattagaataaaggacaacaacctgatacactaaatctcccccgtatacattcggtccaaaaaagaatcttatcatttgatgtattataca |
21661206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 253
Target Start/End: Complemental strand, 21670063 - 21669970
Alignment:
| Q |
162 |
aaatattagaataaaggaaaacaacccgatacattaaagct--ctcgcatacatacagtctgaaaaagaatttcatcatttgatgtattgtaca |
253 |
Q |
| |
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|||||||||||||||||| ||||||| |||||| |||| || | || |||||| | ||| ||||||||| | ||||||||||||||| |||| |
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| T |
21670063 |
aaatattagaataaaggacaacaacctgatacactaaatctcccccgtatacattcggtccaaaaaagaatcttatcatttgatgtattataca |
21669970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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