View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12057_low_5 (Length: 530)
Name: NF12057_low_5
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12057_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 53635652 - 53635295
Alignment:
| Q |
16 |
tcttcttcttctgcaaaaagacaaaatcagagtacaaaacatcacatggtggatacatatagaataatgtaaaaagggagcaaggctttatcccctagaa |
115 |
Q |
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| T |
53635652 |
tcttcttcttctgcaaaaagacaaaatcagagtacaaaacatcacacggtggatacatatagaataatgtaaaaagggagcaaggctttatcccctagaa |
53635553 |
T |
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| Q |
116 |
cataacatgtcctttcgtccctgtttagaagtatactccaaaaatatgtgaaacgttgtagaattcagatggtgaaataca----ctcaataacaaatga |
211 |
Q |
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| T |
53635552 |
cataacatgtcctttcgtccctgtttagaagtatactccaaaaatatgtgaatcgttgtagaattcagatggtgaaatacactcactcaataacaaatga |
53635453 |
T |
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| Q |
212 |
tgtttgatttgtctaatgtgtgcacaagtaaataagtcacactgtgcataaatatatttttatcattatatcaatcaataagtcacatttgatcagggac |
311 |
Q |
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| T |
53635452 |
tgtttgattt-----atgtgtgcacaagtaaataagtcacattgtgcataaatatatttttatcattatatcaatcaataagtcacatttgatcagagac |
53635358 |
T |
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| Q |
312 |
agactcagaagtttccagtagtgacggcaatatacatataattaaaaagcattaaatgtattt |
374 |
Q |
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| T |
53635357 |
agactcagaagtttccagtagtgacggcaatatatatataattaaaaagcattaaatgtattt |
53635295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 392
Target Start/End: Complemental strand, 53633612 - 53633525
Alignment:
| Q |
304 |
tcagggacagactcagaagtttccagtagtgacggcaatatacatataattaaaaagcattaaatgtatttcttacaaaaacataaata |
392 |
Q |
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| T |
53633612 |
tcagggacagacccagaagtttcgactagtgaaggcaatatacatataattaagaagtattaaatgaattt-ttttaaaaacataaata |
53633525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 53635281 - 53635227
Alignment:
| Q |
362 |
attaaatgtatttcttacaaaaacataaatattcataatttttggttgttgtgtgc |
417 |
Q |
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| T |
53635281 |
attaaatgtatttcttac-aaaacataaatatacatcatagttggttgttgtgtgc |
53635227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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