View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12057_low_6 (Length: 486)
Name: NF12057_low_6
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12057_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 20 - 473
Target Start/End: Complemental strand, 1851877 - 1851426
Alignment:
| Q |
20 |
agcaccatgtatttaaacagttaaaattttagcttgagcataaaaatattacaagtaaatgagcatttcagtcattgaaactgtaagggtcggtctcagg |
119 |
Q |
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| T |
1851877 |
agcaccatgtatttaaacagttaaaattttagcttgagcataaa--tattacgagtaaatgagcatttcagtcattgaaactgtaagggtcggtctcagg |
1851780 |
T |
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| Q |
120 |
ctctaaaatttgtaaaataacattttagtccatttaattgaagaatgtcaatttagtcattcgaccaaaatatctctttaataatcatgcatcaaaagca |
219 |
Q |
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| T |
1851779 |
ctctaaaatttgtaaaataacaatttagtccatttaattgaagaatgtcaatttagtcattcgaccaaaatatctctttaataatcatgcatcaaaagca |
1851680 |
T |
|
| Q |
220 |
atgaaagatctacatattgacatcaatagtatcttgctgcgtcaaaacaaacatagaacctctcaaaatgttattgtaaaaaatccttcgtggaaccatt |
319 |
Q |
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| T |
1851679 |
atgaaagatctacatattgacatcaatagtatcttgctgcgtcaaaacaaacatagaaccactcaaaatgttattgtaaaaaatccttcgtggaaccatt |
1851580 |
T |
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| Q |
320 |
gagcaattctaatatattacctgtgcgcctatgccatattctctagagtcaacaggcaatcccaactcctcattggcttctacggtatcgcgtccatcat |
419 |
Q |
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| T |
1851579 |
gagcaattctaatatattacctgtgcgcctatgccatattctctagagtcaacaggcaatcccaactcctcattggcttctacggtatcgcgtccatcat |
1851480 |
T |
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| Q |
420 |
cctgtaagttataagcacggagcttgtggcccaatccaataccccttccttcat |
473 |
Q |
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| T |
1851479 |
cctgtaagttataagcacggagcttgtggcccaatccaataccccttccttcat |
1851426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 335 - 473
Target Start/End: Original strand, 37267126 - 37267264
Alignment:
| Q |
335 |
attacctgtgcgcctatgccatattctctagagtcaacaggcaatcccaactcctcattggcttctacggtatcgcgtccatcatcctgtaagttataag |
434 |
Q |
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| T |
37267126 |
attacctgtgcaccaattccatactcccttgagtcaacaggcaatcccaactcctcattggcttctacagtatcccttccctcatcctgtaggttatacg |
37267225 |
T |
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| Q |
435 |
cacggagcttgtggcccaatccaataccccttccttcat |
473 |
Q |
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| T |
37267226 |
cacgaagcttgtggcccaatccaataccccttccttcat |
37267264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 14013902 - 14013990
Alignment:
| Q |
167 |
tcaatttagtcattcgaccaaaatatctctttaataatcatgcatcaaaagcaatgaaagatctacatattgacatcaatagtatcttg |
255 |
Q |
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| T |
14013902 |
tcaatttagtccctctatcaaaatatttctttagtaaacatccatcaaaaccgatgaaagacctacatattgacttctatagtctcttg |
14013990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 280
Target Start/End: Complemental strand, 34726716 - 34726621
Alignment:
| Q |
185 |
caaaatatctctttaataatcatgcatcaaaagcaatgaaagatctacatattgacatcaatagtatcttgctgcgtcaaaacaaacatagaacct |
280 |
Q |
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| T |
34726716 |
caaaatatttcttcagtaagcatccatgaaaaccaataaaagagatacatattgacttaaatagtcttttgctgcatcaaaacaagcatagaacct |
34726621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 258
Target Start/End: Complemental strand, 34732459 - 34732386
Alignment:
| Q |
185 |
caaaatatctctttaataatcatgcatcaaaagcaatgaaagatctacatattgacatcaatagtatcttgctg |
258 |
Q |
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| T |
34732459 |
caaaatatctctttagtaatcatccataaaaatcactgaaaaatctaaatattgacttgaatagtcttttgctg |
34732386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 15504620 - 15504709
Alignment:
| Q |
186 |
aaaatatctctttaataatcatgcatcaaaagcaatgaaagatcta-catattgacatcaatagtatcttgctgcgtcaaaacaaacata |
274 |
Q |
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|||||||||||||| ||| ||| | |||||| |||||||||||||| ||||| || | |||||| ||||| ||| |||| ||||||||| |
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| T |
15504620 |
aaaatatctctttagtaaacattcgtcaaaatcaatgaaagatctataatattaacttaaatagtctcttgttgcatcaagacaaacata |
15504709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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