View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12057_low_9 (Length: 426)

Name: NF12057_low_9
Description: NF12057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12057_low_9
NF12057_low_9
[»] chr1 (1 HSPs)
chr1 (19-405)||(3563516-3563900)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 405
Target Start/End: Complemental strand, 3563900 - 3563516
Alignment:
Q  19 cacagaggcacgaagaaattcagctatactatatacatacatagacatatacatattgtaacaaaaagaaagacttatacataannnnnnnnnnnnnnaa 118  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||              ||    
T  3563900 cacaaaggcacgaagaaattcagctatactatatacatacatagacatatacatattgtaacaaaaataaagacttatacataattttttatttttttaa 3563801  T
Q  119 tacatttaaacatagtaataaagctcgtacaaaagttatactagtatgtaattattnnnnnnn-gaaagaataatcaattaagaggaatgctattgctac 217  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||    
T  3563800 tatatttaaacatagtaataaagctcgtacaaaagttatactagtatgtaattattaaaaaatagaaagaataatcaattaagaggaatgctattgctac 3563701  T
Q  218 taggtagttgctagctagaaaatgctaatcattgtccttcttattttggcctgagctattactactagcctactataatcaatagtactactataagaga 317  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   |||| ||||||    
T  3563700 taggtatttgctagctagaaaatgctaatcattgtccttcttattttggcctgagctattgctactagcctactataatcaatagt---actagaagaga 3563604  T
Q  318 gatggcacaataaaaacgtggccactttcaataaccttattaataatatattatacagtatggtcgatgtgatgtacactccagcctt 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3563603 gatggcacaataaaaacgtggccactttcaataaccttattaataatatattatacagtatggtcgatgtgatgtacactccagcctt 3563516  T

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