View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12058_low_2 (Length: 310)
Name: NF12058_low_2
Description: NF12058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12058_low_2 |
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| [»] chr2 (9 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 23 - 310
Target Start/End: Original strand, 2309082 - 2309369
Alignment:
| Q |
23 |
cacacatattcttccccacaaaagagtaaagttgcaccaaacatttacgtaaatatggaaacatggttcatcgtcctcgttactctctgcatcatcttcc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2309082 |
cacacatattcttccccacaaaagagtaaagttgcaccaaacatttacgtaaatatagaaacatggttcatagtcctcgttactctctgcatcatcttcc |
2309181 |
T |
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| Q |
123 |
ttattagagccatgctctccttcttcacaaccactgtacccctccctcccggccctctacacatccccatcatcacaaagttccaattgctccaaaaatc |
222 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2309182 |
ttatcagagccatgctctccttcttcacaaccactgtacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatc |
2309281 |
T |
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| Q |
223 |
aatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctatcatcactgtccatatcggttctcgaccttccatt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
2309282 |
aatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcattgtccatatcggttctcaaccttccatt |
2309369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 39 - 310
Target Start/End: Original strand, 2320087 - 2320358
Alignment:
| Q |
39 |
cacaaaagagtaaagttgcaccaaacatttacgtaaatatggaaacatggttcatcgtcctcgttactctctgcatcatcttccttattagagccatgct |
138 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| || |
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| T |
2320087 |
cacaaaagagtaaagttgcaccaaacatttacgtaaatatggaaacatggttcatcgtcctcgttacgctatgcatcatcttccttatcagagccatcct |
2320186 |
T |
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| Q |
139 |
ctccttcttcacaaccactgtacccctccctcccggccctctacacatccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaa |
238 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2320187 |
ctccttcttcacaaccaccgtacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaa |
2320286 |
T |
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| Q |
239 |
ccttttctcaaaactctccatgctaaacatggtcctatcatcactgtccatatcggttctcgaccttccatt |
310 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2320287 |
ccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccatatcggttctcgaccttccatt |
2320358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 23 - 310
Target Start/End: Original strand, 2292751 - 2293038
Alignment:
| Q |
23 |
cacacatattcttccccacaaaagagtaaagttgcaccaaacatttacgtaaatatggaaacatggttcatcgtcctcgttactctctgcatcatcttcc |
122 |
Q |
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||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| |
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| T |
2292751 |
cacacatatccatcgccacaaaagagtaaagttgcaccaaacatttacgtaaatatggaaccatggttcattgtcctcgttactctttgcatcatcttcc |
2292850 |
T |
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| Q |
123 |
ttattagagccatgctctccttcttcacaaccactgtacccctccctcccggccctctacacatccccatcatcacaaagttccaattgctccaaaaatc |
222 |
Q |
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|||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2292851 |
ttatcagagccatcctctccttattcacaaccaccatacccctccctcccggccctctacacatccccatcatcacaaacttccaattgctccaaaaatc |
2292950 |
T |
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| Q |
223 |
aatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctatcatcactgtccatatcggttctcgaccttccatt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2292951 |
aatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccatatcggttctcgaccttccatt |
2293038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 35 - 310
Target Start/End: Original strand, 2302385 - 2302657
Alignment:
| Q |
35 |
tccccacaaaagagtaaagttgcaccaaacatttacgtaaatatggaaacatggttcatcgtcctcgttactctctgcatcatcttccttattagagcca |
134 |
Q |
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|||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| |||||| |||||||||||||||||||||| || ||| || |
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| T |
2302385 |
tccccacaaaagagtaaagttgcaccaaacttttac---acaatggaaacatggttcattgtcctcattactctctgcatcatcttcctcatcggagtca |
2302481 |
T |
|
| Q |
135 |
tgctctccttcttcacaaccactgtacccctccctcccggccctctacacatccccatcatcacaaagttccaattgctccaaaaatcaatctcccaact |
234 |
Q |
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| || ||| |||||||||||| |||||| ||||||| ||||||| ||||||||||||| ||||||| | || ||||||| |||| || ||||||||| |
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| T |
2302482 |
ttcttgcctccttcacaaccaccgtacccttccctcctggccctccacacatccccatcctcacaaacattcagttgctccgaaaaccatcctcccaact |
2302581 |
T |
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| Q |
235 |
tgaaccttttctcaaaactctccatgctaaacatggtcctatcatcactgtccatatcggttctcgaccttccatt |
310 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
2302582 |
tgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactctccacatcggttctcgaccttccatt |
2302657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 77 - 310
Target Start/End: Original strand, 2325979 - 2326212
Alignment:
| Q |
77 |
atggaaacatggttcatcgtcctcgttactctctgcatcatcttccttattagagccatgctctccttcttcacaaccactgtacccctccctcccggcc |
176 |
Q |
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|||||||||||||||||||||||| ||||||| |||||||||||||| | | |||||| ||||||| |||||||||||| ||||||||||||||| ||| |
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| T |
2325979 |
atggaaacatggttcatcgtcctcattactctttgcatcatcttcctcgtcaaagccattctctcctccttcacaaccaccgtacccctccctcccagcc |
2326078 |
T |
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| Q |
177 |
ctctacacatccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctat |
276 |
Q |
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| | |||||||||||||||||||| | |||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2326079 |
caccacacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctat |
2326178 |
T |
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| Q |
277 |
catcactgtccatatcggttctcgaccttccatt |
310 |
Q |
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||||| | | ||||||| || ||||||||||| |
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| T |
2326179 |
catcaatcttaatatcggctccagaccttccatt |
2326212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 191 - 310
Target Start/End: Original strand, 2329808 - 2329927
Alignment:
| Q |
191 |
atcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgctaaacatggtcctatcatcactgtccata |
290 |
Q |
| |
|
|||||||||| |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||| ||||||||||||||||||| | | ||| |
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| T |
2329808 |
atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata |
2329907 |
T |
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| Q |
291 |
tcggttctcgaccttccatt |
310 |
Q |
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|||||||||||||||||||| |
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| T |
2329908 |
tcggttctcgaccttccatt |
2329927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 310
Target Start/End: Original strand, 2350079 - 2350227
Alignment:
| Q |
162 |
ccctccctcccggccctctacacatccccatcatcacaaagttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgc |
261 |
Q |
| |
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||||||||||||| || | || |||||||| ||||||| ||| || ||||| ||||||| |||||||| ||||||||| ||||||| ||||| | |
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| T |
2350079 |
ccctccctcccggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacac |
2350178 |
T |
|
| Q |
262 |
taaacatggtcctatcatcactgtccatatcggttctcgaccttccatt |
310 |
Q |
| |
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||| ||||||||||||||||| || | ||| ||| |||||||||||| |
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| T |
2350179 |
caaatatggtcctatcatcactctcaaaatcagttaccgaccttccatt |
2350227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 2329682 - 2329739
Alignment:
| Q |
77 |
atggaaacatggttcatcgtcctcgttactctctgcatcatcttccttattagagcca |
134 |
Q |
| |
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||||||||||||||||||| || ||| ||||||||||||||||||| || ||||||| |
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| T |
2329682 |
atggaaacatggttcatcgcacttgtttctctctgcatcatcttcctcatcagagcca |
2329739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 2349982 - 2350040
Alignment:
| Q |
77 |
atggaaacatggttcatcgtcctcgttactctctgcatcatcttccttattagagccat |
135 |
Q |
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||||||||||||||||| | || ||| ||||||||||||||||||| || |||||||| |
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| T |
2349982 |
atggaaacatggttcattgcacttgtttctctctgcatcatcttcctcatcagagccat |
2350040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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