View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12059_high_2 (Length: 208)
Name: NF12059_high_2
Description: NF12059
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12059_high_2 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 2440561 - 2440354
Alignment:
| Q |
1 |
aatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattgattgataatttccctg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440561 |
aatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacactgctcatagttctcaagcctaaacaattgattgataatttccctg |
2440462 |
T |
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| Q |
101 |
aaatggcaccttcttccctctaacaaaaatagtgaatttcatcaaatcattcttatagttcccatcttctttagcaggaccaatatatgcatttgcaaag |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2440461 |
aaatggcaccttcttccctctaacaaaactagtgaatttcatcaaatcattcttatagttcccatcttctttagcaagaccaatatatgcatttgcaaag |
2440362 |
T |
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| Q |
201 |
aactcttt |
208 |
Q |
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|||||||| |
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| T |
2440361 |
aactcttt |
2440354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 6e-73; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 41656543 - 41656752
Alignment:
| Q |
1 |
aatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattgattgataatttccc-- |
98 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||| |||| ||||||| |||||||||||| | |
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| T |
41656543 |
aatctcctgatgatcaatgttagatccctttgcctttcttgcttcaaatgaacactgctcatagttctctagcccaaacaatcgattgataattttctca |
41656642 |
T |
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| Q |
99 |
tgaaatggcaccttcttccctctaacaaaaatagtgaatttcatcaaatcattcttatagttcccatcttctttagcaggaccaatatatgcatttgcaa |
198 |
Q |
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|||||||||||| |||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
41656643 |
tgaaatggcaccatcttgcctctgacaaaactagtgaatttcatcaaatcattcttatagttcccatcttctttagcaggacccagatatgcatttgcaa |
41656742 |
T |
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| Q |
199 |
agaactcttt |
208 |
Q |
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|||||||||| |
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| T |
41656743 |
agaactcttt |
41656752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 41665304 - 41665513
Alignment:
| Q |
1 |
aatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattgattgataatttccc-- |
98 |
Q |
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|||||||||||||||||||||||| |||||| |||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| | |
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| T |
41665304 |
aatctcctgatgatcaatgttagagcccttggtctttcttgcttcaaacgaacactgctcatagttctcaagcccaaacaattgattgataattttctca |
41665403 |
T |
|
| Q |
99 |
tgaaatggcaccttcttccctctaacaaaaatagtgaatttcatcaaatcattcttatagttcccatcttctttagcaggaccaatatatgcatttgcaa |
198 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| |||||||||||||||||| |||| ||| |||||||||||||||| |
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| T |
41665404 |
tgaaatggcaccttcttccctctcacaaaactagtgaatttcatcagatcattctcatagttcccatcttctttggcagtacccatatatgcatttgcaa |
41665503 |
T |
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| Q |
199 |
agaactcttt |
208 |
Q |
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|||||||||| |
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| T |
41665504 |
agaactcttt |
41665513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 41648452 - 41648650
Alignment:
| Q |
1 |
aatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattgattgataattt--ccc |
98 |
Q |
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|||||||||||||||||||||||| |||||| ||||||| |||||| |||| || ||||| ||||||||||| |||||||||||||||||||| | |
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| T |
41648452 |
aatctcctgatgatcaatgttagagcccttggtctttcttgtttcaaaggaacactcctcattgttctcaagcccaaacaattgattgataattttatca |
41648551 |
T |
|
| Q |
99 |
tgaaatggcaccttcttccctctaacaaaaatagtgaatttcatcaaatcattcttatagttcccatcttctttagcaggaccaatatatgcatttgca |
197 |
Q |
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|||||||| |||||||||||||| |||||| ||||||||| ||| | ||||||||||| ||||||||||||||||| |||||| ||||||||||||| |
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| T |
41648552 |
tgaaatggaaccttcttccctctcacaaaactagtgaattgcattagatcattcttattgttcccatcttctttagtaggaccctgatatgcatttgca |
41648650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 41716338 - 41716494
Alignment:
| Q |
1 |
aatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattgattgataattt--ccc |
98 |
Q |
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||||||||||||||||| |||||| |||||| | ||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| | |
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| T |
41716338 |
aatctcctgatgatcaacgttagaacccttggcctttcttgcttcaaatgaacacttctcatagttctcaagcctaaacatttgattgataattttatca |
41716437 |
T |
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| Q |
99 |
tgaaatggcaccttcttccctctaacaaaaatagtgaatttcatcaaatcattctta |
155 |
Q |
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|||||||| |||||||||||||| |||||| ||||||||||||| |||||||||| |
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| T |
41716438 |
tgaaatggaaccttcttccctctgacaaaactagtgaatttcattcgatcattctta |
41716494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 41706535 - 41706678
Alignment:
| Q |
1 |
aatctcctgatgatcaatgttagatcccttgccatttcttgcttcaaatgaacgctgctcatagttctcaagcctaaacaattgattgataatttc--cc |
98 |
Q |
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|||||||||||||||||||||||| |||||| | |||||||||||||| |||| |||||||||||||||||||| |||||||| ||||||||| | | |
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| T |
41706535 |
aatctcctgatgatcaatgttagaacccttggcctttcttgcttcaaaggaacactgctcatagttctcaagcccaaacaattcattgataatattatca |
41706634 |
T |
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| Q |
99 |
tgaaatggcaccttcttccctctaacaaaaatagtgaatttcat |
142 |
Q |
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|||||||| || ||||||||||| | |||| ||||||||||||| |
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| T |
41706635 |
tgaaatggaacattcttccctctgataaaactagtgaatttcat |
41706678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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