View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12060_high_1 (Length: 1075)

Name: NF12060_high_1
Description: NF12060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12060_high_1
NF12060_high_1
[»] chr8 (11 HSPs)
chr8 (650-1057)||(22203535-22203942)
chr8 (388-623)||(22203294-22203529)
chr8 (17-367)||(22202746-22203101)
chr8 (50-98)||(39674012-39674061)
chr8 (828-896)||(39435295-39435363)
chr8 (24-67)||(27558885-27558928)
chr8 (17-85)||(12770401-12770470)
chr8 (9-77)||(38283149-38283218)
chr8 (831-896)||(41849278-41849343)
chr8 (17-85)||(43846968-43847037)
chr8 (17-85)||(44156745-44156813)
[»] chr4 (5 HSPs)
chr4 (831-896)||(32778141-32778206)
chr4 (17-101)||(12625862-12625948)
chr4 (17-85)||(2629612-2629681)
chr4 (17-101)||(51890830-51890916)
chr4 (17-85)||(29406390-29406459)
[»] chr3 (10 HSPs)
chr3 (9-98)||(37740791-37740882)
chr3 (828-888)||(47770338-47770398)
chr3 (7-85)||(26880200-26880279)
chr3 (24-67)||(51017827-51017870)
chr3 (17-101)||(24303423-24303509)
chr3 (24-77)||(52309086-52309140)
chr3 (17-85)||(19222554-19222623)
chr3 (17-85)||(46844939-46845008)
chr3 (17-85)||(49443391-49443460)
chr3 (17-85)||(52992027-52992096)
[»] chr1 (13 HSPs)
chr1 (17-98)||(30245978-30246061)
chr1 (17-85)||(11333697-11333766)
chr1 (17-85)||(11491718-11491787)
chr1 (17-85)||(50119005-50119074)
chr1 (49-84)||(14760720-14760755)
chr1 (17-85)||(1247288-1247357)
chr1 (17-85)||(23991232-23991301)
chr1 (17-85)||(25036230-25036299)
chr1 (17-85)||(25041442-25041511)
chr1 (17-85)||(33843163-33843232)
chr1 (17-85)||(33950747-33950816)
chr1 (17-101)||(37280735-37280820)
chr1 (9-73)||(49503130-49503195)
[»] chr7 (6 HSPs)
chr7 (17-85)||(27788302-27788371)
chr7 (17-85)||(27791458-27791527)
chr7 (828-896)||(7298172-7298240)
chr7 (17-75)||(44831600-44831658)
chr7 (17-85)||(23274782-23274851)
chr7 (18-101)||(45284770-45284855)
[»] chr2 (4 HSPs)
chr2 (17-85)||(3596283-3596352)
chr2 (830-896)||(12366743-12366809)
chr2 (51-84)||(31411821-31411854)
chr2 (29-85)||(36143161-36143218)
[»] chr6 (3 HSPs)
chr6 (18-85)||(32788822-32788890)
chr6 (7-85)||(32620039-32620118)
chr6 (40-85)||(6419051-6419096)
[»] chr5 (2 HSPs)
chr5 (17-85)||(28758385-28758455)
chr5 (17-85)||(8571826-8571895)
[»] scaffold0154 (1 HSPs)
scaffold0154 (9-85)||(28789-28866)


Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-179; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 650 - 1057
Target Start/End: Original strand, 22203535 - 22203942
Alignment:
Q  650 ctttctcaaacaataccttggctctacacatatatattgtcctccaccaatttttaactaatgtgtgttgaattttaccacccaagattgaattttcaac 749  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22203535 ctttctcaaacaataccttggctctacacatatatattgtcctccaccaatttttaactaatgtgtgttgaattttaccacccaagattgaattttcaac 22203634  T
Q  750 aatgaggacttgaatgttttagtatttttggatcattagatgatatttatgtataaatagagagttaagtgcttttgaagctcaactgataaataccaaa 849  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  22203635 aatgaggacttgaatgttttagtatttttggatcattagatgatatttatgtataaatagagagttaagtgcttttgaagctcaactgacaaataccgaa 22203734  T
Q  850 attgcaaggtcggatgtcgtgatctggattcaaatccgagacctcacggtggattaccgcttcatctattacnnnnnnntaaatatgcttttgaagtctt 949  Q
    ||||||||||| || ||||||| | || ||| |||||||||||||| | |||||||||||||||||||  ||       |||||||||||||||||||||    
T  22203735 attgcaaggtcagacgtcgtgacccgggttcgaatccgagacctcatgatggattaccgcttcatctaacac-aaaaaataaatatgcttttgaagtctt 22203833  T
Q  950 atgttttgtttttggtcaaaatttaaaagtattgtgttaatcgcccatta-cagtgatccttgatagacttcaattgaaaagttatgattactgctgtat 1048  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22203834 atgttttgtttttggtcaaaatttaaaagtcttgtgttaatcgcccattaccagtaatccttgatagacttcaattgaaaagttatgattactgctgtat 22203933  T
Q  1049 cttacacat 1057  Q
    |||||||||    
T  22203934 cttacacat 22203942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-127
Query Start/End: Original strand, 388 - 623
Target Start/End: Original strand, 22203294 - 22203529
Alignment:
Q  388 aacaagttcaaattgcaagctgcataaggttgagatagaatctttttgtttttctggtataaaatgatgtcaagttttaatagtactactatggccacaa 487  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22203294 aacaagttcaaattgcaagctgcataaggttgagatagaatctttttgtttttctggtagaaaatgatgtcaagttttaatagtactactatggccacaa 22203393  T
Q  488 cacgtggtgctgacataacctggcacactagtacttactactaaccatgatttcacaagatgccatcgtactcagtacttgatgccagttttcaccatgg 587  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22203394 cacgtggtgctgacataacctggcacactagtacttactactaaccatgatttcacaagatgccatcgtactcagtacttgatgccagttttcaccatgg 22203493  T
Q  588 acggtatctagatatagaggacaaaaaacaaactct 623  Q
    ||||||||||||||||||||||||||||||||||||    
T  22203494 acggtatctagatatagaggacaaaaaacaaactct 22203529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 17 - 367
Target Start/End: Original strand, 22202746 - 22203101
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccagacaccccactttttcacatttaattgtatgagctcg-gccactagactattaaacnnnnnnnnnnn 115  Q
    |||||||||||||||||| || |||  |||||| ||||||||||||| |||||||||||||||||| ||  ||||||||| || ||||                
T  22202746 cataatttatgcaggagttgggatttaaacccaaacaccccacttttccacatttaattgtatgagttccagccactagattactaaaaaaaccag---- 22202841  T
Q  116 nnntagaccgaaacaatgaggaaagcaattcatcaaaagaaacgttatcactgaaaatcaaaacgaaagtgggggtacttgcctataaggtcatcagtgt 215  Q
        |||||||||||||||| |||| ||||||||||||||||  || | | ||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  22202842 ----agaccgaaacaatgagaaaagtaattcatcaaaagaaatattgtaagtgaaaatcaaaacgaaagtgggggtacttgcctataaagtcgtcagtgt 22202937  T
Q  216 ggctctgcccgacggtgatcca-tatgattttgtaaaaactacactttgtagctttggaaaat------------ccgtatttcttatatatttaccgtg 302  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |            || || |||| ||||||||||||||    
T  22202938 ggctctgcccgacggtgatccactatgattttgtaaaaactacattttgtaactttggaaagtctgagtggattaccataattctgatatatttaccgtg 22203037  T
Q  303 atatcaaacccactttaattccattttgtctttctataatggcttttggactgaattaaaattga 367  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||    
T  22203038 atatcaaacccactttaattcca-tttgtctttctataatgccttttggactcaattaaaattga 22203101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 39674061 - 39674012
Alignment:
Q  50 gacaccccactttttcacatttaattgtatgagctc-ggccactagacta 98  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||||||    
T  39674061 gacaccccacttcttcacatttaattgtatgagctctagccactagacta 39674012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 828 - 896
Target Start/End: Original strand, 39435295 - 39435363
Alignment:
Q  828 agctcaactgataaataccaaaattgcaaggtcggatgtcgtgatctggattcaaatccgagacctcac 896  Q
    ||||||||||  ||||  |||||||||||||||||| ||| |||||||| ||| || ||||||||||||    
T  39435295 agctcaactggcaaatgtcaaaattgcaaggtcggacgtcatgatctgggttcgaacccgagacctcac 39435363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 27558928 - 27558885
Alignment:
Q  24 tatgcaggagtcggaattcgaacccagacaccccactttttcac 67  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||    
T  27558928 tatgcaggggtcgggattcgaacccagacaccccacttattcac 27558885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 12770401 - 12770470
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccag-acaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| | |||  ||||||||| | ||||||||||| | ||||||||||||| |||||||    
T  12770401 cataatttatgcaggggccggggttcgaaccccggacaccccacttctccacatttaattgtgtgagctc 12770470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 38283149 - 38283218
Alignment:
Q  9 ggacatcacataatttatgcaggagtcggaattcgaaccc-agacaccccactttttcacatttaattgt 77  Q
    |||||| | |||||||||||||| | |||  ||||||||| ||||||||||||| | |||||||||||||    
T  38283149 ggacattatataatttatgcaggggccggggttcgaaccccagacaccccacttctccacatttaattgt 38283218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 831 - 896
Target Start/End: Complemental strand, 41849343 - 41849278
Alignment:
Q  831 tcaactgataaataccaaaattgcaaggtcggatgtcgtgatctggattcaaatccgagacctcac 896  Q
    |||||||  |||| || |||||||||||||||| |||||||||||| ||| ||||||  |||||||    
T  41849343 tcaactggcaaatgccgaaattgcaaggtcggacgtcgtgatctgggttcgaatccggaacctcac 41849278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 43846968 - 43847037
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccag-acaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| ||||   ||||||||| | ||||||||||| | ||||||||||||| |||||||    
T  43846968 cataatttatgcaggggtcgatgttcgaaccctggacaccccacttctccacatttaattgtgtgagctc 43847037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 44156745 - 44156813
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaaccc-agacaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| | |||| |||||||||  |||||||| ||| ||||||||||||||| |||||||    
T  44156745 cataatttatgcaggggacggagttcgaaccctggacacccc-cttcttcacatttaattgtgtgagctc 44156813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 831 - 896
Target Start/End: Original strand, 32778141 - 32778206
Alignment:
Q  831 tcaactgataaataccaaaattgcaaggtcggatgtcgtgatctggattcaaatccgagacctcac 896  Q
    |||||||| |||||||||||||||||||||||| ||||||||| || ||| ||  |||||||||||    
T  32778141 tcaactgacaaataccaaaattgcaaggtcggacgtcgtgatccgggttcgaacacgagacctcac 32778206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 12625862 - 12625948
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaac-ccagacaccccactttttcacatttaattgtatgagctc-ggccactagactatta 101  Q
    ||||||||||||||| |||||| ||||||| || |||||||||||| | ||||||||||||| ||| |||  |||||||| ||||||    
T  12625862 cataatttatgcaggggtcggagttcgaacaccggacaccccacttctccacatttaattgtgtgaactctagccactaggctatta 12625948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 2629612 - 2629681
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccaga-caccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| |||||  ||||||||| || |||||||||| | ||||||||||||| |||||||    
T  2629612 cataatttatgcaggggtcggggttcgaaccccgaacaccccacttctccacatttaattgtgtgagctc 2629681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 51890830 - 51890916
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccag-acaccccactttttcacatttaattgtatgagctc-ggccactagactatta 101  Q
    ||||||||||||||| | |||  ||||||||| | ||||||||||| | ||||||||||||| |||||||  |||||||| ||||||    
T  51890830 cataatttatgcaggggccggggttcgaaccccggacaccccacttctccacatttaattgtgtgagctctagccactaggctatta 51890916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 29406390 - 29406459
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaac-ccagacaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| |||||  ||||||| || |||| ||||||| | ||||||||||||| |||||||    
T  29406390 cataatttatgcaggggtcggggttcgaactccggacaacccacttctccacatttaattgtgtgagctc 29406459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 37740791 - 37740882
Alignment:
Q  9 ggacatcacataatttatgcaggagtcggaattcgaacc-cagacaccccactttttcacatttaattgtatgagct-cggccactagacta 98  Q
    |||||| ||||||||| |||||||||| || |||||||| | |||||| ||||||| ||||||||||||| ||| || | ||||||||||||    
T  37740791 ggacattacataatttttgcaggagtcagagttcgaacctcggacacctcacttttccacatttaattgtgtgaactccagccactagacta 37740882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 828 - 888
Target Start/End: Original strand, 47770338 - 47770398
Alignment:
Q  828 agctcaactgataaataccaaaattgcaaggtcggatgtcgtgatctggattcaaatccga 888  Q
    ||||||||||||||||  | |||||||||| ||||| ||||||| |||||||| |||||||    
T  47770338 agctcaactgataaatgtcgaaattgcaagctcggacgtcgtgacctggattcgaatccga 47770398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 26880200 - 26880279
Alignment:
Q  7 atggacatcacataatttatgcaggagtcggaattcgaacc-cagacaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||  ||||||||||||||| |||||  |||||||  |||||||||||||| | ||||||||| ||| |||||||    
T  26880200 atggacattgcataatttatgcaggggtcggggttcgaacttcagacaccccacttctccacatttaaatgtgtgagctc 26880279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 51017827 - 51017870
Alignment:
Q  24 tatgcaggagtcggaattcgaacccagacaccccactttttcac 67  Q
    ||||||||||||||| ||||||||| |||||||||||| |||||    
T  51017827 tatgcaggagtcggagttcgaacccggacaccccacttattcac 51017870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 24303423 - 24303509
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccag-acaccccactttttcacatttaattgtatgagctc-ggccactagactatta 101  Q
    ||||||||||||||| | |||  ||||||||| | ||||||||||| | ||||||||||||| |||||||  |||||||| ||||||    
T  24303423 cataatttatgcaggggccggggttcgaaccccggacaccccacttctccacatttaattgtgtgagctctagccactaggctatta 24303509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 52309140 - 52309086
Alignment:
Q  24 tatgcaggagtcggaattcgaaccc-agacaccccactttttcacatttaattgt 77  Q
    ||||||||||||||  ||||||||| ||||||||||||| | |||||||||||||    
T  52309140 tatgcaggagtcggggttcgaaccccagacaccccacttctccacatttaattgt 52309086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 19222623 - 19222554
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccag-acaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| | |||  ||||||||| | ||||||||||| | ||||||||||||| |||||||    
T  19222623 cataatttatgcaggggccggggttcgaaccccggacaccccacttctccacatttaattgtgtgagctc 19222554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 46845008 - 46844939
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaa-cccagacaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| |||||| |||||| ||| ||||||| |||| | ||||||||| ||| |||||||    
T  46845008 cataatttatgcaggggtcggagttcgaaccccggacaccctacttctccacatttaaatgtgtgagctc 46844939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 49443460 - 49443391
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccag-acaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| | |||| ||||||||| | ||||||||||| | ||||||||| ||| |||||||    
T  49443460 cataatttatgcaggggccggagttcgaaccccggacaccccacttctccacatttaaatgtgtgagctc 49443391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 52992096 - 52992027
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaaccca-gacaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||| | ||||| ||||||||||  |||||||||||| | || |||||||||| |||||||    
T  52992096 cataatttatgcaagggtcgggattcgaaccctcgacaccccacttctccatatttaattgtgtgagctc 52992027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.0000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 30246061 - 30245978
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccagac-accccactttttcacatttaattgtatgagctc-ggccactagacta 98  Q
    ||||||| ||||||| ||||| |||||||||| ||  ||||||||| | |||||||||||||||||||||  ||||||||||||    
T  30246061 cataattgatgcaggggtcgggattcgaaccccgaataccccacttctccacatttaattgtatgagctctagccactagacta 30245978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 11333697 - 11333766
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccag-acaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| | |||| ||||||||| | ||||||||||| | ||||||||||||| |||||||    
T  11333697 cataatttatgcaggggccggagttcgaaccccggacaccccacttctccacatttaattgtgtgagctc 11333766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 11491718 - 11491787
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccag-acaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| | |||| ||||||||| | ||||||||||| | ||||||||||||| |||||||    
T  11491718 cataatttatgcaggggccggagttcgaaccccggacaccccacttctccacatttaattgtgtgagctc 11491787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 50119005 - 50119074
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccag-acaccccactttttcacatttaattgtatgagctc 85  Q
    |||| |||||||||| |||||| ||||||||| | ||||||||||| | ||||||||||||| |||||||    
T  50119005 catattttatgcaggggtcggagttcgaaccccggacaccccacttctccacatttaattgtgtgagctc 50119074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 14760755 - 14760720
Alignment:
Q  49 agacaccccactttttcacatttaattgtatgagct 84  Q
    ||||||||||||||||||||||||||||| ||||||    
T  14760755 agacaccccactttttcacatttaattgtgtgagct 14760720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 1247288 - 1247357
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaaccc-agacaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| ||||   ||||||||| ||||||| ||||| | ||||||||||||| |||||||    
T  1247288 cataatttatgcaggggtcgaggttcgaaccccagacacctcacttctccacatttaattgtttgagctc 1247357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 23991301 - 23991232
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccag-acaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| | |||  ||||||||| | ||||||||||| | ||||||||||||| |||||||    
T  23991301 cataatttatgcaggggccggggttcgaaccctggacaccccacttctccacatttaattgtgtgagctc 23991232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 25036299 - 25036230
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccag-acaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| | ||| |||||||||| | |||||||| || | ||||||||||||| |||||||    
T  25036299 cataatttatgcaggggccgggattcgaaccccgaacaccccatttctccacatttaattgtgtgagctc 25036230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 25041511 - 25041442
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccag-acaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| | ||| |||||||||| | |||||||| || | ||||||||||||| |||||||    
T  25041511 cataatttatgcaggggccgggattcgaaccccgaacaccccatttctccacatttaattgtgtgagctc 25041442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 33843232 - 33843163
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccaga-caccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||  |||||  ||||||||| || |||||||||| ||||| ||||||||| |||||||    
T  33843232 cataatttatgcagaggtcggggttcgaaccccgaacaccccacttcttcacgtttaattgtgtgagctc 33843163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 33950747 - 33950816
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccaga-caccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||  |||||  ||||||||| || |||||||||| ||||| ||||||||| |||||||    
T  33950747 cataatttatgcagaggtcggggttcgaaccccgaacaccccacttcttcacgtttaattgtgtgagctc 33950816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 37280735 - 37280820
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccagacaccccactttttcacatttaattgtatgagct-cggccactagactatta 101  Q
    ||||||||||  ||| ||||| |||||||| | | |||||||||| | ||||||||||||| |||||| | |||||||| ||||||    
T  37280735 cataatttatataggggtcgggattcgaactccggcaccccacttctccacatttaattgtgtgagctccagccactaggctatta 37280820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 49503195 - 49503130
Alignment:
Q  9 ggacatcacataatttatgcaggagtcggaattcgaac-ccagacaccccactttttcacatttaa 73  Q
    |||||| |||||||||||||||| | |||| ||||||| || ||||||||| || |||||||||||    
T  49503195 ggacattacataatttatgcaggggccggagttcgaacgccggacaccccagttcttcacatttaa 49503130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 27788302 - 27788371
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaaccc-agacaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| | |||  ||||||||| ||||||||||||| | ||||||||| |||||||||||    
T  27788302 cataatttatgcaggggccggggttcgaaccccagacaccccacttctccacatttaaatgtatgagctc 27788371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 27791458 - 27791527
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaaccc-agacaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| | |||  ||||||||| ||||||||||||| | ||||||||| |||||||||||    
T  27791458 cataatttatgcaggggccggggttcgaaccccagacaccccacttctccacatttaaatgtatgagctc 27791527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 828 - 896
Target Start/End: Complemental strand, 7298240 - 7298172
Alignment:
Q  828 agctcaactgataaataccaaaattgcaaggtcggatgtcgtgatctggattcaaatccgagacctcac 896  Q
    |||||||||||||||| ||||||||  ||||||||||||||||| |  ||||| || | ||||||||||    
T  7298240 agctcaactgataaatgccaaaattataaggtcggatgtcgtgacccagattcgaacctgagacctcac 7298172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 44831658 - 44831600
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccagacaccccactttttcacatttaatt 75  Q
    ||||||||||||||| ||| || |||||||  ||||||||||||| | |||||||||||    
T  44831658 cataatttatgcaggggtcagagttcgaacatagacaccccacttctccacatttaatt 44831600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 23274851 - 23274782
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaa-cccagacaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| | |||| |||||| ||| ||||||||| |||| |||| |||||||| |||||||    
T  23274851 cataatttatgcaggggccggagttcgaaccccggacaccccatttttccacaattaattgtgtgagctc 23274782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 45284855 - 45284770
Alignment:
Q  18 ataatttatgcaggagtcggaattcgaacccag-acaccccactttttcacatttaattgtatgagctc-ggccactagactatta 101  Q
    |||||||||||||| |||||  ||||||||| | ||||||||||| |  |||||||||||| |||||||   ||||||||||||||    
T  45284855 ataatttatgcaggggtcggggttcgaaccccggacaccccacttctcaacatttaattgtgtgagctctaaccactagactatta 45284770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 3596283 - 3596352
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccag-acaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| |||||  ||||||||| | ||||||||||| | ||||||||||||| |||||||    
T  3596283 cataatttatgcaggggtcggggttcgaaccccggacaccccacttctccacatttaattgtgtgagctc 3596352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 830 - 896
Target Start/End: Original strand, 12366743 - 12366809
Alignment:
Q  830 ctcaactgataaataccaaaattgcaaggtcggatgtcgtgatctggattcaaatccgagacctcac 896  Q
    |||||||||||||||||||||||| |||||| ||  | |||||| ||||||||| |||  |||||||    
T  12366743 ctcaactgataaataccaaaattgtaaggtcagacattgtgatccggattcaaacccggaacctcac 12366809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 31411854 - 31411821
Alignment:
Q  51 acaccccactttttcacatttaattgtatgagct 84  Q
    ||||||||||||||||||||||||||| ||||||    
T  31411854 acaccccactttttcacatttaattgtgtgagct 31411821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 36143218 - 36143161
Alignment:
Q  29 aggagtcggaattcgaacccagacaccccactttttcacattt-aattgtatgagctc 85  Q
    |||||||||| |||||||||| |||||| |||| ||||||||| || |||||||||||    
T  36143218 aggagtcggagttcgaacccaaacacccaacttcttcacatttaaaatgtatgagctc 36143161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 32788890 - 32788822
Alignment:
Q  18 ataatttatgcaggagtcggaattcgaac-ccagacaccccactttttcacatttaattgtatgagctc 85  Q
    |||||||||||||| || ||  ||||||| || |||||||||||| | |||||||||||||||||||||    
T  32788890 ataatttatgcaggggttggggttcgaactccggacaccccacttctacacatttaattgtatgagctc 32788822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 32620118 - 32620039
Alignment:
Q  7 atggacatcacataatttatgcaggagtcggaattcgaacccag-acaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||  |||||||||||||||||| ||  |||||| || | |||||||| || | |||||||||||||||||||||    
T  32620118 atggacattgcataatttatgcaggagttggggttcgaatcctggacaccccatttctccacatttaattgtatgagctc 32620039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 6419096 - 6419051
Alignment:
Q  40 ttcgaacccagacaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||| |||| ||||||| | |||||||||||||||||||||    
T  6419096 ttcgaacccggacaacccacttctccacatttaattgtatgagctc 6419051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 28758455 - 28758385
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacc--cagacaccccactttttcacatttaattgtatgagctc 85  Q
    |||||||||||||||||||||  ||| ||||  | |||||| ||||| | |||||||||||||||||||||    
T  28758455 cataatttatgcaggagtcggggttcaaacctccggacacctcacttctccacatttaattgtatgagctc 28758385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 8571826 - 8571895
Alignment:
Q  17 cataatttatgcaggagtcggaattcgaacccag-acaccccactttttcacatttaattgtatgagctc 85  Q
    ||||||||||||||| |||||  ||||||||| | |||||| |||| | ||||||||||||| |||||||    
T  8571826 cataatttatgcaggggtcggggttcgaaccccgaacaccctacttctccacatttaattgtgtgagctc 8571895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 28866 - 28789
Alignment:
Q  9 ggacatcacataatttatgcaggagtcggaattcgaacccag-acaccccactttttcacatttaattgtatgagctc 85  Q
    |||||| ||||| |||||||||| | |||  ||||||||| | ||||||||||| | ||||||||||||| |||||||    
T  28866 ggacattacatactttatgcaggggccggggttcgaaccccggacaccccacttctccacatttaattgtgtgagctc 28789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University