View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12060_high_15 (Length: 226)
Name: NF12060_high_15
Description: NF12060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12060_high_15 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 34899283 - 34899084
Alignment:
| Q |
27 |
gttccctttcaaggttgcatggaatacctatattggttaaggataacattgcaactaaggataaattgaacactactgctggctctttcgcattgcttgg |
126 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34899283 |
gttctctttcaaggttgcatggaatacctattttggttaaggataacattgcaactaaggataaattgaacactactgctggctcttttgcattgcttgg |
34899184 |
T |
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| Q |
127 |
ctcagtggtgccaagagatgcaggtgttgtttccaagttaagggaagctggtgctatcatattggggaaagccactttgagtgagtggtcaaattacagg |
226 |
Q |
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| T |
34899183 |
atcagttgtgccaagagatgcaggtgttgttaccaagttaagggaagctggtgctatcatattggggaaagccactttgagtgagtggtcacatttcagg |
34899084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 34922720 - 34922509
Alignment:
| Q |
15 |
aaaaagcacctggttccctttcaaggttgcatggaatacctatattggttaaggataacattgcaactaaggataaattgaacactactgctggctcttt |
114 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | ||||| ||||| |||||||| |
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| T |
34922720 |
aaaaagcacctggttctctttcaaggttacatggaatacctatgttggttaaggataacattgcaactaaggataagctaaacaccactgcaggctcttt |
34922621 |
T |
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| Q |
115 |
cgcattgcttggctcagtggtgccaagagatgcaggtgttgtttccaagttaagggaagctggtgctatcatattggggaaagccactttgagtgagtgg |
214 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34922620 |
tgcattgcttggatcagttgtgccaagagatgcaggtgttgttaccaagttaagggaagctggtgctatcatattggggaaagccactttgagtgagtgg |
34922521 |
T |
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| Q |
215 |
tcaaattacagg |
226 |
Q |
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| T |
34922520 |
tcaaattacagg |
34922509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 27 - 226
Target Start/End: Complemental strand, 34913122 - 34912923
Alignment:
| Q |
27 |
gttccctttcaaggttgcatggaatacctatattggttaaggataacattgcaactaaggataaattgaacactactgctggctctttcgcattgcttgg |
126 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| | ||||| |
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| T |
34913122 |
gttctctttcaaggttgcatggaatacctattttggttaaggataacactgcaactaaggatagattgaacactactgctggctcttttgcacttcttgg |
34913023 |
T |
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| Q |
127 |
ctcagtggtgccaagagatgcaggtgttgtttccaagttaagggaagctggtgctatcatattggggaaagccactttgagtgagtggtcaaattacagg |
226 |
Q |
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|||||| |||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||| |
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| T |
34913022 |
ctcagtcgtgccaagagatgcaggtgtggttaccaagttaaggaaagctggtgctatcatattagggaaggccactttgagtgagtggtcacattacagg |
34912923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 34933538 - 34933338
Alignment:
| Q |
26 |
ggttccctttcaaggttgcatggaatacctatattggttaaggataacattgcaactaaggataaattgaacactactgctggctctttcgcattgcttg |
125 |
Q |
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||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34933538 |
ggttctctttcaaggttgcatggaatacctattttggttaaggataacattgcaactaaggataaattgaacactactgctggctcttttgcattgcttg |
34933439 |
T |
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| Q |
126 |
gctcagtggtgccaagagatgcaggtgttgtttccaagttaagggaagctggtgctatcatattggggaaagccactttgagtgagtggtcaaattacag |
225 |
Q |
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||||| ||||||||||||| || ||||||||| |||||||||| ||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||| |
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| T |
34933438 |
gctcactggtgccaagagacgcgggtgttgttaacaagttaaggaaagctggggctattatattggggaaggccaccctgagtgagtggtcatattacag |
34933339 |
T |
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| Q |
226 |
g |
226 |
Q |
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| T |
34933338 |
g |
34933338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 34929458 - 34929247
Alignment:
| Q |
15 |
aaaaagcacctggttccctttcaaggttgcatggaatacctatattggttaaggataacattgcaactaaggataaattgaacactactgctggctcttt |
114 |
Q |
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|||||||| | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||||||| |||||||| |
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| T |
34929458 |
aaaaagcagcaggttctctttcaaggttgcatggaatacctattttggttaaggataacattgcaacaaaggataagctaaacactactgcaggctcttt |
34929359 |
T |
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| Q |
115 |
cgcattgcttggctcagtggtgccaagagatgcaggtgttgtttccaagttaagggaagctggtgctatcatattggggaaagccactttgagtgagtgg |
214 |
Q |
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||| ||||||||||||| |||||||||||||||||||| ||| |||||||||| ||||||| ||||| |||||||| || |||||||||||||||||| |
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| T |
34929358 |
tgcactgcttggctcagtagtgccaagagatgcaggtgtagttaacaagttaaggaaagctggggctattatattgggcaaggccactttgagtgagtgg |
34929259 |
T |
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| Q |
215 |
tcaaattacagg |
226 |
Q |
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||| |||||||| |
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| T |
34929258 |
tcacattacagg |
34929247 |
T |
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