View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12060_high_2 (Length: 882)
Name: NF12060_high_2
Description: NF12060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12060_high_2 |
 | |
|
| [»] scaffold0568 (2 HSPs) |
| |
|
| [»] scaffold0576 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0568 (Bit Score: 789; Significance: 0; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 1 - 882
Target Start/End: Original strand, 1609 - 2490
Alignment:
| Q |
1 |
tagtcaggtatggttctctgttcacttctctgtaatgttgtaagtattgattataattttaaattttcagtctttgacaagcttttatatgattgcttct |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1609 |
tagtcaggtatggttctctattcacttctctgtaatgttgtaagtgttgattataattttaaattttcagtctttgacaagcttttgtatgattgcttct |
1708 |
T |
|
| Q |
101 |
atttttggttgattaacttaatttaaatatggttatattatatgattgtttctatagaagatattttttagaaaatgaatttttatggatttagtactaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1709 |
atttttggttgattaacttaatttaaatatggttatattatatgattgtttctatagaagttattttttagaaaatgaattttcatggatttagtactaa |
1808 |
T |
|
| Q |
201 |
ttttggaatctacttgtcatttggagaatgaatatgaaaatgatgtataaaacttgtttaatttctgagtttgtgatgcatatgatttgaatttggttac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1809 |
ttttggaatctacttgtcatttggagaatgaatatgaaaataatgtataaaacttgtttaatttctgagtttgtgatgcatatgatttggatttggttac |
1908 |
T |
|
| Q |
301 |
aagaatttaaatttttgaagatgctttctagactttattatcagagaaggttaacatttgagcagatttttaacttgagcatgttctttacttttcaata |
400 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1909 |
aagaatttaaatttttgaagaagcttactagactttattattaaagaaagttaacatttgagcagatttttaacttgagcatgttctttacttttcaata |
2008 |
T |
|
| Q |
401 |
tggtttaatctttagtaaggtttgagcatcaagtgtagaaagagttcattgcttcgaaaaaatatgggctggttactattgcattttgttaacttttttc |
500 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2009 |
tggtttaatctctagtaaggtttgagcatcaagtgtagaaagagttcattgcttcgaaaaaatatgggctggttactattgcattttgttaacttttttc |
2108 |
T |
|
| Q |
501 |
tcctaatttatttattgtttatgggcttgatatataggggatgaagacgtctttgctgattgtggttggaattgttgagagaattcagagtcaaaaaata |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2109 |
tcctaatttatttattgtttatgggcttgatatataggggatgaagacgtctttgctgattgtggttggaattgttgagagaattcagagtcaaaaaata |
2208 |
T |
|
| Q |
601 |
ttcaaggatttaagtatttaagtgtttacactgacattactttgtacttcttagtaacttattgtttcttgaagagcatggtaatgcactggaagcctac |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2209 |
ttcaaggatttaagtatttaagtgtttacactgacattactttgtacttcttagtaacttattgtttcttgaagagcatggtaatgcactggaagcctac |
2308 |
T |
|
| Q |
701 |
ctgttgccattatttgacccaaatatatctcccaaaaatgtggttataattgtaaaattttgacaggttctgannnnnnngtgttcgcatgttctgtttg |
800 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
2309 |
ctgttgccattatttgacccaaatataactcccaaaaatgtggttataattgcaaaattttgacaggttctggtttttttgtgttcgcaggttctgtttg |
2408 |
T |
|
| Q |
801 |
ctgttttggtgggtgctgccttctgttaggggcggctgctgctgtgtgcacctgctgtcagctggtgtttgatgctgccagc |
882 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2409 |
ctgttttggtgggtgctgccttctgttaggggcggctgctgctgtgtgcacctgctgtcagctggtgtttgctgctgccagc |
2490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 1 - 882
Target Start/End: Original strand, 8211 - 9092
Alignment:
| Q |
1 |
tagtcaggtatggttctctgttcacttctctgtaatgttgtaagtattgattataattttaaattttcagtctttgacaagcttttatatgattgcttct |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8211 |
tagtcaggtatggttctctattcacttctctgtaatgttgtaagtgttgattataattttaaattttcagtctttgacaagcttttgtatgattgcttct |
8310 |
T |
|
| Q |
101 |
atttttggttgattaacttaatttaaatatggttatattatatgattgtttctatagaagatattttttagaaaatgaatttttatggatttagtactaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8311 |
atttttggttgattaacttaatttaaatatggttatattatatgattgtttctatagaagttattttttagaaaatgaattttcatggatttagtactaa |
8410 |
T |
|
| Q |
201 |
ttttggaatctacttgtcatttggagaatgaatatgaaaatgatgtataaaacttgtttaatttctgagtttgtgatgcatatgatttgaatttggttac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8411 |
ttttggaatctacttgtcatttggagaatgaatatgaaaataatgtataaaacttgtttaatttctgagtttgtgatgcatatgatttggatttggttac |
8510 |
T |
|
| Q |
301 |
aagaatttaaatttttgaagatgctttctagactttattatcagagaaggttaacatttgagcagatttttaacttgagcatgttctttacttttcaata |
400 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8511 |
aagaatttaaatttttgaagaagcttactagactttattattaaagaaagttaacatttgagcagatttttaacttgagcatgttctttacttttcaata |
8610 |
T |
|
| Q |
401 |
tggtttaatctttagtaaggtttgagcatcaagtgtagaaagagttcattgcttcgaaaaaatatgggctggttactattgcattttgttaacttttttc |
500 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8611 |
tggtttaatctctagtaaggtttgagcatcaagtgtagaaagagttcattgcttcgaaaaaatatgggctggttactattgcattttgttaacttttttc |
8710 |
T |
|
| Q |
501 |
tcctaatttatttattgtttatgggcttgatatataggggatgaagacgtctttgctgattgtggttggaattgttgagagaattcagagtcaaaaaata |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8711 |
tcctaatttatttattgtttatgggcttgatatataggggatgaagacgtctttgctgattgtggttggaattgttgagagaattcagagtcaaaaaata |
8810 |
T |
|
| Q |
601 |
ttcaaggatttaagtatttaagtgtttacactgacattactttgtacttcttagtaacttattgtttcttgaagagcatggtaatgcactggaagcctac |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8811 |
ttcaaggatttaagtatttaagtgtttacactgacattactttgtacttcttagtaacttattgtttcttgaagagcatggtaatgcactggaagcctac |
8910 |
T |
|
| Q |
701 |
ctgttgccattatttgacccaaatatatctcccaaaaatgtggttataattgtaaaattttgacaggttctgannnnnnngtgttcgcatgttctgtttg |
800 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
8911 |
ctgttgccattatttgacccaaatataactcccaaaaatgtggttataattgcaaaattttgacaggttctggtttttttgtgttcgcaggttctgtttg |
9010 |
T |
|
| Q |
801 |
ctgttttggtgggtgctgccttctgttaggggcggctgctgctgtgtgcacctgctgtcagctggtgtttgatgctgccagc |
882 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9011 |
ctgttttggtgggtgctgccttctgttaggggcggctgctgctgtgtgcacctgctgtcagctggtgtttgctgctgccagc |
9092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 17059694 - 17060186
Alignment:
| Q |
1 |
tagtcaggtatggttctctgttcacttctctgtaatgttgtaagtattgattataattttaaattttcagtctttgacaagcttttatatgattgcttct |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17059694 |
tagtcaggtatggttctctgt------ctctgtaatgttgtaagtattgattataattttaaattttcagtctttgacaagcttttatatgattgcttct |
17059787 |
T |
|
| Q |
101 |
atttttggttgattaacttaatttaaatatggttatattatatgattgtttctatagaagatattttttagaaaatgaatttttatggatttagtactaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17059788 |
atttttggttgattaacttaatttaaatatggttatattatatgattgtttctatagaagatattttttagaaaatgaatttttatggatttagtactaa |
17059887 |
T |
|
| Q |
201 |
ttttggaatctacttgtcatttggagaatgaatatgaaaatgatgtataaaacttgtttaatttctgagtttgtgatgcatatgatttgaatttggttac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17059888 |
ttttggaatctacttgtcatttggagaatgaatatgaaaatgatgtataaaacttgtttaatttctgagtttgtgatgcatatgatttggatttggttac |
17059987 |
T |
|
| Q |
301 |
aagaatttaaatttttgaagatgctttctagactttattatcagagaaggttaacatttgagcagatttttaacttgagcatgttctttacttttcaata |
400 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17059988 |
aagaatttaaatttttgaagaagcttactagactttattattagagaaggttaacatttgagcagatttttaacttgagcatgttctttacttttcaata |
17060087 |
T |
|
| Q |
401 |
tggtttaatctttagtaaggtttgagcatcaagtgtagaaagagttcattgcttcgaaaaaatatgggctggttactattgcattttgttaactttttt |
499 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17060088 |
tggtttaatctctagtaaggtttgagcatcaagtgtagaaagagttcattgcttcgaaaaaatatgggctggttactattgcattttgttaactttttt |
17060186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 552 - 882
Target Start/End: Original strand, 17060184 - 17060515
Alignment:
| Q |
552 |
tttgctgattgtggttggaattgttgagagaattcagagtcaaaaaatattcaaggatttaagtatttaagtgtttacactgacattactttgtacttct |
651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17060184 |
tttgctgattgtggttggaattgttgagagaattcaaagtcaaaaaatattcaaggatttaagtatttaagtgtttacactgacattactttgtacttct |
17060283 |
T |
|
| Q |
652 |
tagtaacttattgtttcttgaagagcatggtaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataatt |
751 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17060284 |
tagtaacttattgtttcttgaagagcatggcaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataatt |
17060383 |
T |
|
| Q |
752 |
gtaaaattttgacaggttctgannnnnnngtgttcgcatgttctgtttgctgttttggtgggtgctgccttctgtta-ggggcggctgctgctgtgtgca |
850 |
Q |
| |
|
| ||||||||||| |||| || ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
17060384 |
gcaaaattttgaccggttatggtttttttgtgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttagggggcggctgctgctgtgtgca |
17060483 |
T |
|
| Q |
851 |
cctgctgtcagctggtgtttgatgctgccagc |
882 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |
|
|
| T |
17060484 |
cctgctgtcagctggtgtttgctgctgccagc |
17060515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 164 - 309
Target Start/End: Complemental strand, 43262334 - 43262189
Alignment:
| Q |
164 |
ttttttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgaatatgaaaatgatgtataaaacttgtttaatt |
263 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |||||||||||||||||||| |||| ||||||||| |||||||||||||| | || ||||||||| || |
|
|
| T |
43262334 |
tttttgagaaaatgaattttcatggatttagcactaattttggaatctacttctcatgtggagaatggatatgaaaatgatgcacaagacttgtttagtt |
43262235 |
T |
|
| Q |
264 |
tctgagtttgtgatgc--atatgatttgaatttggttacaagaattta |
309 |
Q |
| |
|
|||||||||||||| ||||| |||| |||||||||||||| |||| |
|
|
| T |
43262234 |
--tgagtttgtgatgcatatatggtttggatttggttacaagacttta |
43262189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 185 - 301
Target Start/End: Original strand, 36229097 - 36229211
Alignment:
| Q |
185 |
atggatttagtactaattttggaatctacttgtcatttggagaatgaatatgaaaatgatgtataaaacttgtttaatttctgagtttgtgatgcatatg |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| | || ||||||||||||| |||| | ||||||||||| |
|
|
| T |
36229097 |
atggatttagtactaattttggaatctacttctcacgtggagaatgaatatgaaaataatgcacaagacttgtttaatttttgag--tctgatgcatatg |
36229194 |
T |
|
| Q |
285 |
atttgaatttggttaca |
301 |
Q |
| |
|
|||| |||| |||||| |
|
|
| T |
36229195 |
gtttggatttcgttaca |
36229211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 609 - 663
Target Start/End: Original strand, 18198940 - 18198994
Alignment:
| Q |
609 |
tttaagtatttaagtgtttacactgacattactttgtacttcttagtaacttatt |
663 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| |||||||||||||| | |||||| |
|
|
| T |
18198940 |
tttaaggatttaagcgtttacactgacattattttgtacttcttagaagcttatt |
18198994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 18202163 - 18202127
Alignment:
| Q |
6 |
aggtatggttctctgttcacttctctgtaatgttgta |
42 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18202163 |
aggtatggttctctcttcacttctctgtaatgttgta |
18202127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 63 - 321
Target Start/End: Original strand, 48223016 - 48223272
Alignment:
| Q |
63 |
attttcagtctttgacaagcttttatatgattgcttctatttttggttgattaacttaatttaaatatggttatattatatgattgtttctatagaagat |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | |
|
|
| T |
48223016 |
attttcagtctttgacaagcttttatatgattgcttctatttttggttgattaacttaatttaaatcaggttatat---atgattgtttctatagaagtt |
48223112 |
T |
|
| Q |
163 |
atttt-ttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgaatatgaaaatgatgtataaaacttgtttaa |
261 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48223113 |
atttttttagaaaatgaattttcatggatttagtactaattttggaatctacttgtcatctggagaatgaatatgaaaatgatgtataaaacttgtttaa |
48223212 |
T |
|
| Q |
262 |
tttctgagtttgtgatgcatatgatttgaatttggttacaagaatttaaatttttgaaga |
321 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||| |
|
|
| T |
48223213 |
tttctgagtttgtgctgcatatgatttggatttggttacaagactttaactttttgaaga |
48223272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 782 - 870
Target Start/End: Original strand, 48223874 - 48223962
Alignment:
| Q |
782 |
tgttcgcatgttctgtttgctgttttggtgggtgctgccttctgttaggggcggctgctgctgtgtgcacctgctgtcagctggtgttt |
870 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48223874 |
tgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttaagggcggctgctgctatgtgcacctgctgtcagctggtgttt |
48223962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 164 - 306
Target Start/End: Original strand, 48223411 - 48223555
Alignment:
| Q |
164 |
ttttttagaaaatgaatttttatggatttagtactaattttggaatctacttgtcatttggagaatgaatatgaaaatgatgtataaaacttgtttaatt |
263 |
Q |
| |
|
||||| |||||||||||||| || |||||||||||||||||| |||||||| |||| ||||||||| |||||||||||||||| || | |||||||||| |
|
|
| T |
48223411 |
tttttgagaaaatgaattttcatagatttagtactaattttgtaatctactcctcatgtggagaatgtatatgaaaatgatgtagaagatttgtttaatt |
48223510 |
T |
|
| Q |
264 |
tctgagtttgtgatgc--atatgatttgaatttggttacaagaat |
306 |
Q |
| |
|
| ||| |||||||| ||||| |||| |||||||||| ||||| |
|
|
| T |
48223511 |
gtttagtctgtgatgcatatatggtttggatttggttaccagaat |
48223555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 663
Target Start/End: Original strand, 20264808 - 20264855
Alignment:
| Q |
616 |
atttaagtgtttacactgacattactttgtacttcttagtaacttatt |
663 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
20264808 |
atttaagtggttacactgacattattttgtacttcttagtagcttatt |
20264855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 660 - 752
Target Start/End: Original strand, 29158097 - 29158189
Alignment:
| Q |
660 |
tattgtttcttgaagagcatggtaatgcactggaagcctacctgttgccattatttgacccaaatatatctcccaaaaatgtggttataattg |
752 |
Q |
| |
|
||||||||||| ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
29158097 |
tattgtttcttcaagagcaaggtaatgcattggaagcctacctgttgccaatatttgacccaaatatatctcccagaaatgtggctataattg |
29158189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 473 - 580
Target Start/End: Complemental strand, 21990540 - 21990432
Alignment:
| Q |
473 |
ttactattgcattttgttaacttttttctcctaatttatttattgtttatggg-cttgatatataggggatgaagacgtctttgctgattgtggttggaa |
571 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| | ||||||||||||||| | | |||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
21990540 |
ttactattgcattttgttaactcttttctcctaatctgtttattgtttatgggcccttatatataggggatgaagatgtagttgctgattgtggttggaa |
21990441 |
T |
|
| Q |
572 |
ttgttgaga |
580 |
Q |
| |
|
||| ||||| |
|
|
| T |
21990440 |
ttgatgaga |
21990432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 616 - 663
Target Start/End: Original strand, 28658640 - 28658687
Alignment:
| Q |
616 |
atttaagtgtttacactgacattactttgtacttcttagtaacttatt |
663 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
28658640 |
atttaagtggttacactgacattattttgtacttcttagtagcttatt |
28658687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 5523931 - 5523996
Alignment:
| Q |
381 |
atgttctttacttttcaatatggtttaatctttagtaaggtttgagcatcaagtgtagaaagagtt |
446 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| | ||||||||||||||||||| ||||||||||| |
|
|
| T |
5523931 |
atgttttttactcttcaatatggtttaatcttcaataaggtttgagcatcaagtatagaaagagtt |
5523996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 609 - 663
Target Start/End: Original strand, 4537 - 4591
Alignment:
| Q |
609 |
tttaagtatttaagtgtttacactgacattactttgtacttcttagtaacttatt |
663 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
4537 |
tttaagtatttaagtggttacactgacattattttgtacttcttagtagcttatt |
4591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 609 - 663
Target Start/End: Original strand, 3734086 - 3734140
Alignment:
| Q |
609 |
tttaagtatttaagtgtttacactgacattactttgtacttcttagtaacttatt |
663 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
3734086 |
tttaagtatttaagtggttacactgacattattttgtacttcttagtagcttatt |
3734140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 609 - 663
Target Start/End: Complemental strand, 2752009 - 2751955
Alignment:
| Q |
609 |
tttaagtatttaagtgtttacactgacattactttgtacttcttagtaacttatt |
663 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
2752009 |
tttaagtatttaagtggttacactgacattattttgtacttcttagtagcttatt |
2751955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 609 - 663
Target Start/End: Original strand, 15359553 - 15359607
Alignment:
| Q |
609 |
tttaagtatttaagtgtttacactgacattactttgtacttcttagtaacttatt |
663 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
15359553 |
tttaagtatttaagtggttacactgacattattttgtacttcttagtagcttatt |
15359607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 609 - 663
Target Start/End: Complemental strand, 288857 - 288803
Alignment:
| Q |
609 |
tttaagtatttaagtgtttacactgacattactttgtacttcttagtaacttatt |
663 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| |||||||||||||| | |||||| |
|
|
| T |
288857 |
tttaaggatttaagcgtttacactgacattattttgtacttcttagaagcttatt |
288803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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