View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12060_low_10 (Length: 334)

Name: NF12060_low_10
Description: NF12060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12060_low_10
NF12060_low_10
[»] chr4 (29 HSPs)
chr4 (17-297)||(50250605-50250885)
chr4 (225-297)||(50669237-50669309)
chr4 (32-81)||(49048613-49048662)
chr4 (29-98)||(50669044-50669113)
chr4 (38-98)||(7877727-7877787)
chr4 (33-89)||(37827017-37827073)
chr4 (40-98)||(7908325-7908383)
chr4 (37-86)||(45384903-45384952)
chr4 (37-86)||(48735417-48735466)
chr4 (235-276)||(48852849-48852890)
chr4 (37-93)||(48147745-48147801)
chr4 (232-276)||(48903120-48903164)
chr4 (38-81)||(7237763-7237806)
chr4 (38-81)||(7771396-7771439)
chr4 (38-81)||(7790081-7790124)
chr4 (32-71)||(7813469-7813508)
chr4 (32-71)||(7822958-7822997)
chr4 (225-276)||(48705237-48705288)
chr4 (31-82)||(49044226-49044277)
chr4 (225-263)||(7773696-7773734)
chr4 (241-295)||(49040984-49041038)
chr4 (225-262)||(7771553-7771590)
chr4 (225-262)||(7790238-7790275)
chr4 (32-93)||(48852658-48852719)
chr4 (232-265)||(48898893-48898926)
chr4 (37-86)||(48902929-48902978)
chr4 (232-265)||(49044055-49044088)
chr4 (38-86)||(48705394-48705442)
chr4 (241-297)||(48863421-48863477)
[»] chr7 (2 HSPs)
chr7 (29-93)||(48883790-48883854)
chr7 (225-276)||(48883984-48884036)
[»] chr8 (5 HSPs)
chr8 (29-82)||(12200296-12200349)
chr8 (29-82)||(12444724-12444777)
chr8 (233-270)||(12195484-12195521)
chr8 (233-270)||(12439912-12439949)
chr8 (231-265)||(15349038-15349072)
[»] chr6 (4 HSPs)
chr6 (32-80)||(21015801-21015849)
chr6 (225-297)||(21979465-21979537)
chr6 (235-277)||(21015992-21016034)
chr6 (32-81)||(21979678-21979727)
[»] chr5 (2 HSPs)
chr5 (35-86)||(42562375-42562426)
chr5 (37-93)||(29696203-29696259)
[»] chr3 (2 HSPs)
chr3 (33-93)||(11005981-11006041)
chr3 (33-93)||(11024556-11024616)
[»] chr1 (4 HSPs)
chr1 (37-93)||(24367144-24367200)
chr1 (37-93)||(24369477-24369533)
chr1 (232-297)||(24367327-24367392)
chr1 (37-93)||(24310168-24310224)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 50250885 - 50250605
Alignment:
Q  17 aatatcattccaatcatctatatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctatcatccttatgattataatgattc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50250885 aatatcattccaatcatctatatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctatcatccttatgattataatgattc 50250786  T
Q  117 atcacatttggagnnnnnnncattgagaaataatatctggaaacaaattgaaattgagggtacacacttagcttatatgaattccactttggatcctcgt 216  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50250785 atcacatttggagtttttttcattgagaaataatatctggaaacaaattgaaattgagggtacacacttagcttatatgaattccactttggatcctcgt 50250686  T
Q  217 agcaagcgaggggttctctttaatggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  50250685 agcaagcgaggggttctctttaatggggctattcattggttggcttttcgttatgatttattggtctatgttattgttgcc 50250605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 50669237 - 50669309
Alignment:
Q  225 aggggttctctttaatggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 297  Q
    ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||  ||| | ||| |||||||||    
T  50669237 aggggttctctttaatgaggctatttattggttggcttttcgttatgatttaaaggtgtttgtcattgttgcc 50669309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 49048662 - 49048613
Alignment:
Q  32 atctatatggttttggttatgaccactcaacagatgattatttggtggtt 81  Q
    |||||||||||||||| |||||||  ||||||||||||||||||||||||    
T  49048662 atctatatggttttgggtatgacccatcaacagatgattatttggtggtt 49048613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 50669044 - 50669113
Alignment:
Q  29 atcatctatatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctatcatcc 98  Q
    |||||||||||||||||||||||||||  |||| ||||||||| ||||| |||||| | |||||| ||||    
T  50669044 atcatctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgatcc 50669113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 7877727 - 7877787
Alignment:
Q  38 atggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctatcatcc 98  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||| | |||||| ||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggtttcattgtcctataatcc 7877787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 37827073 - 37827017
Alignment:
Q  33 tctatatggttttggttatgaccactcaacagatgattatttggtggtttcaatatc 89  Q
    |||||||||||||||||||||||| || | ||||||||| ||||| |||||||||||    
T  37827073 tctatatggttttggttatgaccagtctagagatgattacttggttgtttcaatatc 37827017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 7908325 - 7908383
Alignment:
Q  40 ggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctatcatcc 98  Q
    ||||||||||||||||| |||| ||||||||| |||||||||||| | |||||| ||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttcattgtcctataatcc 7908383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 45384952 - 45384903
Alignment:
Q  37 tatggttttggttatgaccactcaacagatgattatttggtggtttcaat 86  Q
    ||||||||||| ||||| || |||||| ||||||||||||||||||||||    
T  45384952 tatggttttgggtatgatcagtcaacaaatgattatttggtggtttcaat 45384903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 48735466 - 48735417
Alignment:
Q  37 tatggttttggttatgaccactcaacagatgattatttggtggtttcaat 86  Q
    ||||||||||| |||||||| | |||||||||||| ||||||||||||||    
T  48735466 tatggttttgggtatgaccatttaacagatgattacttggtggtttcaat 48735417  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 48852849 - 48852890
Alignment:
Q  235 tttaatggggctattcattggttggcttttccttatgattta 276  Q
    ||||||||||||||||||||||||||||||| | ||||||||    
T  48852849 tttaatggggctattcattggttggcttttcgtcatgattta 48852890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 48147801 - 48147745
Alignment:
Q  37 tatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 93  Q
    ||||||||||| |||||||| | |||||||||||| |||||||||||| | ||||||    
T  48147801 tatggttttgggtatgaccagttaacagatgattacttggtggtttcattctcctat 48147745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 48903120 - 48903164
Alignment:
Q  232 ctctttaatggggctattcattggttggcttttccttatgattta 276  Q
    |||||||||||||||||||||| ||||||||||| | ||||||||    
T  48903120 ctctttaatggggctattcattagttggcttttcatcatgattta 48903164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 7237806 - 7237763
Alignment:
Q  38 atggttttggttatgaccactcaacagatgattatttggtggtt 81  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggtggtt 7237763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 7771396 - 7771439
Alignment:
Q  38 atggttttggttatgaccactcaacagatgattatttggtggtt 81  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggtggtt 7771439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 7790081 - 7790124
Alignment:
Q  38 atggttttggttatgaccactcaacagatgattatttggtggtt 81  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggtggtt 7790124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 7813469 - 7813508
Alignment:
Q  32 atctatatggttttggttatgaccactcaacagatgatta 71  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  7813469 atctatatggttttggttatgaccagtcaagagatgatta 7813508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 7822958 - 7822997
Alignment:
Q  32 atctatatggttttggttatgaccactcaacagatgatta 71  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  7822958 atctatatggttttggttatgaccagtcaagagatgatta 7822997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 48705288 - 48705237
Alignment:
Q  225 aggggttctctttaatggggctattcattggttggcttttccttatgattta 276  Q
    |||||| |||| |||||||||||||||||||||||||| || | ||||||||    
T  48705288 aggggtgctctataatggggctattcattggttggcttatcgtcatgattta 48705237  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 49044277 - 49044226
Alignment:
Q  31 catctatatggttttggttatgaccactcaacagatgattatttggtggttt 82  Q
    ||||||||| ||||||| ||||| |  |||||||||||||||||||||||||    
T  49044277 catctatattgttttgggtatgatccgtcaacagatgattatttggtggttt 49044226  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 263
Target Start/End: Complemental strand, 7773734 - 7773696
Alignment:
Q  225 aggggttctctttaatggggctattcattggttggcttt 263  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  7773734 agggtttctatttaatggggctattcattggttggcttt 7773696  T

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Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 49041038 - 49040984
Alignment:
Q  241 ggggctattcattggttggcttttccttatgatttattggtctatgttattgttg 295  Q
    ||||||||||||||||||||||||| | ||||| |||  || |||||||||||||    
T  49041038 ggggctattcattggttggcttttcgtcatgatatatgtgtttatgttattgttg 49040984  T

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Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 7771553 - 7771590
Alignment:
Q  225 aggggttctctttaatggggctattcattggttggctt 262  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7771553 agggtttctatttaatggggctattcattggttggctt 7771590  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 7790238 - 7790275
Alignment:
Q  225 aggggttctctttaatggggctattcattggttggctt 262  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7790238 agggtttctatttaatggggctattcattggttggctt 7790275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 48852658 - 48852719
Alignment:
Q  32 atctatatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 93  Q
    |||||||||||||||| |||||||  ||||| |||||||| ||||| |||| ||| ||||||    
T  48852658 atctatatggttttgggtatgacccgtcaaccgatgattacttggtagttttaatgtcctat 48852719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 48898893 - 48898926
Alignment:
Q  232 ctctttaatggggctattcattggttggcttttc 265  Q
    |||| |||||||||||||||||||||||||||||    
T  48898893 ctctataatggggctattcattggttggcttttc 48898926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 48902929 - 48902978
Alignment:
Q  37 tatggttttggttatgaccactcaacagatgattatttggtggtttcaat 86  Q
    ||||||||||| ||||||||||||| ||||||||| ||| |||| |||||    
T  48902929 tatggttttgggtatgaccactcaagagatgattacttgatggtatcaat 48902978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 49044088 - 49044055
Alignment:
Q  232 ctctttaatggggctattcattggttggcttttc 265  Q
    |||||||||||||||||||| |||||||||||||    
T  49044088 ctctttaatggggctattcactggttggcttttc 49044055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 48705442 - 48705394
Alignment:
Q  38 atggttttggttatgaccactcaacagatgattatttggtggtttcaat 86  Q
    |||||||||| ||||| || |||||||||||||| ||||| ||||||||    
T  48705442 atggttttggatatgatcagtcaacagatgattacttggttgtttcaat 48705394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 297
Target Start/End: Original strand, 48863421 - 48863477
Alignment:
Q  241 ggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 297  Q
    ||||||||||||||||||||||||| | ||||| ||   || |||||||||||||||    
T  48863421 ggggctattcattggttggcttttcgtcatgatataggtgtttatgttattgttgcc 48863477  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 48883790 - 48883854
Alignment:
Q  29 atcatctatatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 93  Q
    |||||||||||||||||||||||||||  |||| |||||||||  ||||||||||||| ||||||    
T  48883790 atcatctatatggttttggttatgacccgtcaagagatgattacatggtggtttcaatgtcctat 48883854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 48883984 - 48884036
Alignment:
Q  225 aggggttctctttaatggggctattcattggttgg-cttttccttatgattta 276  Q
    |||| ||| ||||||||||||||||||||||||||  ||||| ||||||||||    
T  48883984 agggtttccctttaatggggctattcattggttggttttttcgttatgattta 48884036  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 12200296 - 12200349
Alignment:
Q  29 atcatctatatggttttggttatgaccactcaacagatgattatttggtggttt 82  Q
    |||||||||||||||||||||||||||  |||| ||||||||| ||||||||||    
T  12200296 atcatctatatggttttggttatgaccggtcaagagatgattacttggtggttt 12200349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 12444724 - 12444777
Alignment:
Q  29 atcatctatatggttttggttatgaccactcaacagatgattatttggtggttt 82  Q
    |||||||||||||||||||||||||||  |||| ||||||||| ||||||||||    
T  12444724 atcatctatatggttttggttatgaccggtcaagagatgattacttggtggttt 12444777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 12195484 - 12195521
Alignment:
Q  233 tctttaatggggctattcattggttggcttttccttat 270  Q
    |||||||||||||||||||||||||||||| |||||||    
T  12195484 tctttaatggggctattcattggttggcttctccttat 12195521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 12439912 - 12439949
Alignment:
Q  233 tctttaatggggctattcattggttggcttttccttat 270  Q
    |||||||||||||||||||||||||||||| |||||||    
T  12439912 tctttaatggggctattcattggttggcttctccttat 12439949  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 15349038 - 15349072
Alignment:
Q  231 tctctttaatggggctattcattggttggcttttc 265  Q
    ||||| |||||||||||||||||||||||||||||    
T  15349038 tctctataatggggctattcattggttggcttttc 15349072  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 21015801 - 21015849
Alignment:
Q  32 atctatatggttttggttatgaccactcaacagatgattatttggtggt 80  Q
    |||||||||||||||| |||||||  |||||||||||||||||||||||    
T  21015801 atctatatggttttgggtatgacccatcaacagatgattatttggtggt 21015849  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 21979537 - 21979465
Alignment:
Q  225 aggggttctctttaatggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 297  Q
    ||||||| |||||||| ||||||||||||||||| ||||||  ||||||||||  || | |||||||||||||    
T  21979537 aggggttttctttaatagggctattcattggttgacttttcggtatgatttatctgtgtttgttattgttgcc 21979465  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 21015992 - 21016034
Alignment:
Q  235 tttaatggggctattcattggttggcttttccttatgatttat 277  Q
    ||||||||||||||||||||||||||||||| | |||||||||    
T  21015992 tttaatggggctattcattggttggcttttcgtcatgatttat 21016034  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 21979727 - 21979678
Alignment:
Q  32 atctatatggttttggttatgaccactcaacagatgattatttggtggtt 81  Q
    ||||||||||||||||||||||||| |||| | ||||||| |||||||||    
T  21979727 atctatatggttttggttatgaccagtcaagaaatgattacttggtggtt 21979678  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 42562426 - 42562375
Alignment:
Q  35 tatatggttttggttatgaccactcaacagatgattatttggtggtttcaat 86  Q
    ||||||||||||| ||||| ||||||||| |||||||||| |||||||||||    
T  42562426 tatatggttttgggtatgatcactcaacaaatgattatttagtggtttcaat 42562375  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 29696203 - 29696259
Alignment:
Q  37 tatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 93  Q
    ||||||||||| |||||| | |||||||||||||| |||||| ||||||| ||||||    
T  29696203 tatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctat 29696259  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 11006041 - 11005981
Alignment:
Q  33 tctatatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 93  Q
    ||||||||||||||| |||||||| |||| ||||||||| |||||||| ||| | ||||||    
T  11006041 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctat 11005981  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 11024616 - 11024556
Alignment:
Q  33 tctatatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 93  Q
    ||||||||||||||| |||||||| |||| ||||||||| |||||||| ||| | ||||||    
T  11024616 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctat 11024556  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 24367144 - 24367200
Alignment:
Q  37 tatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 93  Q
    ||||||||||| |||||| | |||||||||||||| |||||||||||  ||||||||    
T  24367144 tatggttttgggtatgacaagtcaacagatgattacttggtggtttcgttatcctat 24367200  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 24369477 - 24369533
Alignment:
Q  37 tatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 93  Q
    ||||||||||| |||||| | ||||||||||||||  ||||||||||| ||||||||    
T  24369477 tatggttttggctatgacgagtcaacagatgattacctggtggtttcagtatcctat 24369533  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 24367327 - 24367392
Alignment:
Q  232 ctctttaatggggctattcattggttggcttttccttatgatttattggtctatgttattgttgcc 297  Q
    |||||| ||||||||||||| |||||| |||||| ||||||| ||   ||| ||||||||||||||    
T  24367327 ctctttcatggggctattcactggttgacttttcgttatgatatacgtgtcaatgttattgttgcc 24367392  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 24310168 - 24310224
Alignment:
Q  37 tatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 93  Q
    |||||||||||||||||| | |||| ||||||||| ||||| |||| | ||||||||    
T  24310168 tatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctat 24310224  T

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