View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12060_low_11 (Length: 289)
Name: NF12060_low_11
Description: NF12060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12060_low_11 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 4167338 - 4167065
Alignment:
| Q |
16 |
acatcagttacgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaattaaacatggaagaatcaaacacatgacaaagaaa |
115 |
Q |
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| T |
4167338 |
acatcagttacgaattagttggatatagcagacgatgtaatctacatgataccatggtctccaaattaaacatggaaaaatcaaacacgtgacgaagaaa |
4167239 |
T |
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| Q |
116 |
tgttgaaatatagaaaatgaaacaaaatagaaacgataattcggtaagttgcaggaaaacaaataaatcttaaacattctatctatagctagggaaagat |
215 |
Q |
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| T |
4167238 |
tgttgaaatatagaaaatgaaacaaaatagaaacgatatttcggtaagttgcaggaaaacaaataaatcttaaacattctatctatagctagggaaagat |
4167139 |
T |
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| Q |
216 |
ttctctttgcaaaattgttgacacttactccgatctcttggaaaaactaatgcacctcataattctctagatag |
289 |
Q |
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| T |
4167138 |
ttctcttggcaaaattgttgacacttactccgatctcttggaaaaactaatgcacctcataattctctagatag |
4167065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 24 - 289
Target Start/End: Complemental strand, 4151561 - 4151296
Alignment:
| Q |
24 |
tacgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaattaaacatggaagaatcaaacacatgacaaagaaatgttgaaa |
123 |
Q |
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| T |
4151561 |
tacgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaattaaacatggaaaaatcaaacacgtgacgaagaaatgttgaaa |
4151462 |
T |
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| Q |
124 |
tatagaaaatgaaacaaaatagaaacgataattcggtaagttgcaggaaaacaaataaatcttaaacattctatctatagctagggaaagatttctcttt |
223 |
Q |
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| T |
4151461 |
tatagaaaatgaaacaaaatagaaacgatatttcggtaagttgcaggaaaacaaataaatcttaaacattctatctatagctagggaaagatttctcttg |
4151362 |
T |
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| Q |
224 |
gcaaaattgttgacacttactccgatctcttggaaaaactaatgcacctcataattctctagatag |
289 |
Q |
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| T |
4151361 |
gcaaaattgttgacacttactccgatctcttggaaaaactaatgcacctcataattctctagatag |
4151296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 7021244 - 7021167
Alignment:
| Q |
124 |
tatagaaaatgaaacaaaatagaaacgataattcggtaagttgcaggaaaacaaataaa-tcttaaacattctatcta |
200 |
Q |
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| T |
7021244 |
tatagaaaatgaaacaaaatagaaacgataattcaataagttgcaggaaaataaataaattcttaaacatgctatcta |
7021167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 7021325 - 7021282
Alignment:
| Q |
28 |
aaatagttggatatagcagacgatgtaatctacatgataccatg |
71 |
Q |
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| T |
7021325 |
aaatagttggatacagcagacgatgtaatctatatgataccatg |
7021282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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