View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12060_low_12 (Length: 285)
Name: NF12060_low_12
Description: NF12060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12060_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 23844512 - 23844242
Alignment:
| Q |
1 |
ttcatacaccaagtcaacaagcaccaacgcgtatagattgaaaattacaaacctaacattccaaactctataaaaggccataaaaccttaggactcaaac |
100 |
Q |
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| T |
23844512 |
ttcatacaccaagtcaacaagcaccaacgcgtatagattgaaaattacaaacctaacattccaaactctataaaaggccataaaaccttaggactcaaac |
23844413 |
T |
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| Q |
101 |
aacaaaacaaatattttaccagttatcaaagtcatagaaaatttaagtgttgcaatggctacaaatcaggaacatgtgaaacttttgggagctacaggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
23844412 |
aacaaaacaaatattttaccagttatcaaagtcatagaaaatttaagtgttgcaatggctacaaatcaggaacatgtgaatcttttgggagctactggaa |
23844313 |
T |
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| Q |
201 |
gcccatttgtgtgcagggtacagattgctctaaggttgaagggaattgaatatgaatttgttgaagaaaat |
271 |
Q |
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| T |
23844312 |
gcccatttgtgtgcagggtacagattgctctcaagttgaagggaattgaatatgaatttgttgaagaaaat |
23844242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 37 - 271
Target Start/End: Complemental strand, 23841029 - 23840794
Alignment:
| Q |
37 |
attgaaaattacaaacctaacattccaaactctataaaaggccataaaaccttaggactcaaacaacaaaacaaat-attttaccagttatcaaagtcat |
135 |
Q |
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| T |
23841029 |
attgaaaattactaaattaacattccaaactctataaaaggccacaaaaccttaggactcaaacatcaaaacaaattattataccaattatcaaagtcat |
23840930 |
T |
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| Q |
136 |
agaaaatttaagtgttgcaatggctacaaatcaggaacatgtgaaacttttgggagctacaggaagcccatttgtgtgcagggtacagattgctctaagg |
235 |
Q |
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| T |
23840929 |
agaaaatttaagtgttgcaatggctacaaatcaggaacatgtgaaacttttgggagctactggaagcccatttgtgtgcagggtacagattgctctaaag |
23840830 |
T |
|
| Q |
236 |
ttgaagggaattgaatatgaatttgttgaagaaaat |
271 |
Q |
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| T |
23840829 |
ttgaagggaattgaatatgaatttcttgaagaaaat |
23840794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 128 - 270
Target Start/End: Complemental strand, 23857619 - 23857477
Alignment:
| Q |
128 |
aaagtcatagaaaatttaagtgttgcaatggctacaaatcaggaacatgtgaaacttttgggagctacaggaagcccatttgtgtgcagggtacagattg |
227 |
Q |
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||||||| |||||||| ||||| | |||||||||||||||||||| | ||||| || |||||||| | |||||||||||||||||||||||||||||||| |
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| T |
23857619 |
aaagtcagagaaaattgaagtgctacaatggctacaaatcaggaagaagtgaagctattgggagcgataggaagcccatttgtgtgcagggtacagattg |
23857520 |
T |
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| Q |
228 |
ctctaaggttgaagggaattgaatatgaatttgttgaagaaaa |
270 |
Q |
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|||||| ||||||||||||||||| ||||| |||||||||| |
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| T |
23857519 |
ctctaaaattgaagggaattgaatacaaatttcttgaagaaaa |
23857477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 268
Target Start/End: Complemental strand, 23861563 - 23861448
Alignment:
| Q |
153 |
caatggctacaaatcaggaacatgtgaaacttttgggagctacaggaagcccatttgtgtgcagggtacagattgctctaaggttgaagggaattgaata |
252 |
Q |
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|||||||||||||||||||| |||||||||||||||||| | |||||||||||| | ||||||||||||||||| || | || || ||||||||||| |
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| T |
23861563 |
caatggctacaaatcaggaagatgtgaaacttttgggagttgtgggaagcccatttttttgcagggtacagattgcactcaaattcaaaggaattgaata |
23861464 |
T |
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| Q |
253 |
tgaatttgttgaagaa |
268 |
Q |
| |
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||||||||| ||||| |
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| T |
23861463 |
cgaatttgttaaagaa |
23861448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 23865113 - 23865058
Alignment:
| Q |
197 |
ggaagcccatttgtgtgcagggtacagattgctctaaggttgaagggaattgaata |
252 |
Q |
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||||||||||||| |||||||||||||||||||| | || ||| ||||||||||| |
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| T |
23865113 |
ggaagcccatttgcttgcagggtacagattgctcttaagtggaaaggaattgaata |
23865058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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