View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12060_low_13 (Length: 239)

Name: NF12060_low_13
Description: NF12060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12060_low_13
NF12060_low_13
[»] chr4 (5 HSPs)
chr4 (1-222)||(2005746-2005967)
chr4 (136-188)||(23166537-23166589)
chr4 (137-191)||(5240491-5240545)
chr4 (137-191)||(10653888-10653942)
chr4 (137-191)||(10868033-10868087)
[»] chr6 (7 HSPs)
chr6 (1-222)||(25420247-25420468)
chr6 (9-218)||(5373968-5374177)
chr6 (137-191)||(14815949-14816003)
chr6 (137-183)||(28561077-28561123)
chr6 (140-186)||(34824879-34824925)
chr6 (140-189)||(14617269-14617318)
chr6 (137-177)||(31961390-31961430)
[»] chr5 (7 HSPs)
chr5 (132-192)||(31376468-31376528)
chr5 (5-189)||(15449841-15450025)
chr5 (140-216)||(26472844-26472920)
chr5 (132-192)||(31327801-31327861)
chr5 (136-189)||(26465873-26465926)
chr5 (140-204)||(19717715-19717779)
chr5 (140-213)||(19716355-19716428)
[»] chr8 (5 HSPs)
chr8 (137-192)||(20077617-20077672)
chr8 (140-186)||(2997585-2997631)
chr8 (134-192)||(25574949-25575007)
chr8 (137-206)||(15758276-15758345)
chr8 (5-54)||(21028561-21028610)
[»] chr2 (8 HSPs)
chr2 (134-206)||(26360592-26360664)
chr2 (134-192)||(18498921-18498979)
chr2 (132-201)||(27035251-27035320)
chr2 (140-216)||(13131714-13131790)
chr2 (132-191)||(20041898-20041957)
chr2 (11-87)||(18498798-18498874)
chr2 (11-87)||(26360469-26360545)
chr2 (1-45)||(27035120-27035164)
[»] chr1 (2 HSPs)
chr1 (137-191)||(2360708-2360762)
chr1 (11-80)||(40335363-40335432)
[»] chr3 (6 HSPs)
chr3 (140-216)||(8837154-8837230)
chr3 (140-216)||(55311090-55311166)
chr3 (140-186)||(37193159-37193205)
chr3 (132-201)||(19585787-19585856)
chr3 (137-201)||(12286435-12286499)
chr3 (1-45)||(18963660-18963704)
[»] scaffold0779 (1 HSPs)
scaffold0779 (134-192)||(4909-4967)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2005967 - 2005746
Alignment:
Q  1 ttgtagatcaccatgaagaaaagcattgttgacatctagttggtgcaggtgccagttatgaatagatgcaatagcaagaagagttctcactgtagtcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2005967 ttgtagatcaccatgaagaaaagcattgttgacatctagttggtgcaggtgccagttatgaatagatgcaatagcaagaagagttctcactgtagtcaat 2005868  T
Q  101 tttgccactgctgagaatgtatcnnnnnnnncaagaccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatagaaccgtcaa 200  Q
    |||||||||| ||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2005867 tttgccactggtgagaatgtatcaaaaaaatcaagaccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatagaaccatcaa 2005768  T
Q  201 ctttgtacttgattctatatac 222  Q
    ||||| ||||||||||||||||    
T  2005767 ctttgcacttgattctatatac 2005746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 23166537 - 23166589
Alignment:
Q  136 accctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaa 188  Q
    |||||||||||||||||||||||||||||||| || |||||||||||| ||||    
T  23166537 accctcaatttgattgtaacctttagccaccaatcgtgctttgtatctctcaa 23166589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 5240545 - 5240491
Alignment:
Q  137 ccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatag 191  Q
    ||||||||||||||||||||||| || |||| ||||||||| ||||| |||||||    
T  5240545 ccctcaatttgattgtaacctttggcaaccaatcttgctttatatctctcaatag 5240491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 10653942 - 10653888
Alignment:
Q  137 ccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatag 191  Q
    ||||||||||||||||||||||| || |||| ||||||||| ||||| |||||||    
T  10653942 ccctcaatttgattgtaacctttggcaaccaatcttgctttatatctctcaatag 10653888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 10868087 - 10868033
Alignment:
Q  137 ccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatag 191  Q
    ||||||||||||||||||||||| || |||| ||||||||| ||||| |||||||    
T  10868087 ccctcaatttgattgtaacctttggcaaccaatcttgctttatatctctcaatag 10868033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25420247 - 25420468
Alignment:
Q  1 ttgtagatcaccatgaagaaaagcattgttgacatctagttggtgcaggtgccagttatgaatagatgcaatagcaagaagagttctcactgtagtcaat 100  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25420247 ttgtagatctccatgaagaaaagcattattgacatctagttggtgcatgtgccagttatgaatagatgcaatagcaagaagagttctcattgtagtcaat 25420346  T
Q  101 tttgccactgctgagaatgtatcnnnnnnnncaagaccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatagaaccgtcaa 200  Q
    |||||||||| ||||||||||||        |||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  25420347 tttgccactggtgagaatgtatcaaaaaaatcaagaccctctacttgattgcaacctttagccaccaatcttgctttgtatctttcaatagaaccatcaa 25420446  T
Q  201 ctttgtacttgattctatatac 222  Q
    ||||||||||||||||||||||    
T  25420447 ctttgtacttgattctatatac 25420468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 5373968 - 5374177
Alignment:
Q  9 caccatgaagaaaagcattgttgacatctagttggtgcaggtgccagttatgaatagatgcaatagcaagaagagttctcactgtagtcaattttgccac 108  Q
    ||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| | ||| || ||    
T  5373968 caccatgaagaaaagcattattcacatatagttggtgcaggtgccagttatgaatagatggaatagcaagaagggttctcactgtagttagtttggctac 5374067  T
Q  109 tgctgagaatgtatcnnnnnnnncaagaccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatagaaccgtcaactttgtac 208  Q
       ||||||||||||        ||||||| || |||||||| ||||| ||||||||   ||||||||||||||||||||||||||| ||| | ||||||    
T  5374068 atgtgagaatgtatcaaaaaaatcaagaccttctatttgattataacccttagccacttatcttgctttgtatctttcaatagaaccatcagccttgtac 5374167  T
Q  209 ttgattctat 218  Q
    ||||||||||    
T  5374168 ttgattctat 5374177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 14816003 - 14815949
Alignment:
Q  137 ccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatag 191  Q
    ||||||||||||||||||||||| || |||| ||||||||| ||||| |||||||    
T  14816003 ccctcaatttgattgtaacctttggcaaccaatcttgctttatatctctcaatag 14815949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 28561123 - 28561077
Alignment:
Q  137 ccctcaatttgattgtaacctttagccaccagtcttgctttgtatct 183  Q
    |||||||||||| ||||| | ||||| ||||||||||||||||||||    
T  28561123 ccctcaatttgagtgtaatccttagcgaccagtcttgctttgtatct 28561077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 34824925 - 34824879
Alignment:
Q  140 tcaatttgattgtaacctttagccaccagtcttgctttgtatctttc 186  Q
    |||| |||||| || ||||||||||||||||| ||||||||||||||    
T  34824925 tcaacttgattatatcctttagccaccagtctagctttgtatctttc 34824879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 14617318 - 14617269
Alignment:
Q  140 tcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaat 189  Q
    ||||| ||||||||||| ||||| ||||||||||| || |||||||||||    
T  14617318 tcaatctgattgtaacccttagcaaccagtcttgccttatatctttcaat 14617269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 31961430 - 31961390
Alignment:
Q  137 ccctcaatttgattgtaacctttagccaccagtcttgcttt 177  Q
    |||||||||||||||||||| ||||| |||| |||||||||    
T  31961430 ccctcaatttgattgtaacccttagcaaccaatcttgcttt 31961390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 31376468 - 31376528
Alignment:
Q  132 caagaccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaataga 192  Q
    |||| |||||||||||||||||||||||||| ||||||||  |||||||||| ||||||||    
T  31376468 caagtccctcaatttgattgtaacctttagcaaccagtctgactttgtatctctcaataga 31376528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 15450025 - 15449841
Alignment:
Q  5 agatcaccatgaagaaaagcattgttgacatctagttggtgcaggtgccagttatgaatagatgcaatagcaagaagagttctcactgtagtcaattttg 104  Q
    |||||||||||||| ||||||||||| ||||| ||||| || | || ||| | || || |||||||| ||||||||    |||||||||||||| |||      
T  15450025 agatcaccatgaaggaaagcattgttcacatcaagttgatgtaagttccaatgattaagagatgcaaaagcaagaaccaatctcactgtagtcattttga 15449926  T
Q  105 ccactgctgagaatgtatcnnnnnnnncaagaccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaat 189  Q
    |||| | |||  |||||||        |||| || ||||| || |||||||||||||| || ||||  |||||||||||||||||    
T  15449925 ccacaggtgaatatgtatcaaagaaatcaagtccttcaatctggttgtaacctttagctacaagtccagctttgtatctttcaat 15449841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 26472920 - 26472844
Alignment:
Q  140 tcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatagaaccgtcaactttgtacttgattct 216  Q
    |||||||||||||| || ||||| |||||||| ||||| || || || |||||||| ||||| ||||||||||||||    
T  26472920 tcaatttgattgtatcccttagctaccagtctagctttatacctctctatagaaccatcaacattgtacttgattct 26472844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 31327801 - 31327861
Alignment:
Q  132 caagaccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaataga 192  Q
    |||| |||||||||||||||||||||||||| | ||||||  |||||||||| ||||||||    
T  31327801 caagtccctcaatttgattgtaacctttagcaatcagtctgactttgtatctctcaataga 31327861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 26465873 - 26465926
Alignment:
Q  136 accctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaat 189  Q
    |||||||||||| |||||||| || || || |||||||||||||||||||||||    
T  26465873 accctcaatttggttgtaaccctttgcaacaagtcttgctttgtatctttcaat 26465926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 19717715 - 19717779
Alignment:
Q  140 tcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatagaaccgtcaacttt 204  Q
    |||| |||||| ||||| ||| ||||||||||||| |||||||||||||||  ||| ||||||||    
T  19717715 tcaacttgattataacccttaaccaccagtcttgccttgtatctttcaatactaccatcaacttt 19717779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 19716355 - 19716428
Alignment:
Q  140 tcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatagaaccgtcaactttgtacttgat 213  Q
    |||| |||||| ||||| ||| ||||||||||||| |||||||||| | ||  |||||||||||| | ||||||    
T  19716355 tcaacttgattataacccttaaccaccagtcttgccttgtatctttgagtactaccgtcaactttatgcttgat 19716428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 20077672 - 20077617
Alignment:
Q  137 ccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaataga 192  Q
    ||||||||||||||||||||||| || |||||||| |||||||| |||||||||||    
T  20077672 ccctcaatttgattgtaaccttttgctaccagtctggctttgtacctttcaataga 20077617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 2997631 - 2997585
Alignment:
Q  140 tcaatttgattgtaacctttagccaccagtcttgctttgtatctttc 186  Q
    |||| |||||| || ||||||||||||||||| ||||||||||||||    
T  2997631 tcaacttgattatatcctttagccaccagtctagctttgtatctttc 2997585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 25574949 - 25575007
Alignment:
Q  134 agaccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaataga 192  Q
    ||||||||||| |||||||| |||||||| || ||||| || ||||| |||||||||||    
T  25574949 agaccctcaatctgattgtaccctttagcaactagtctggccttgtacctttcaataga 25575007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 15758345 - 15758276
Alignment:
Q  137 ccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatagaaccgtcaactttgt 206  Q
    |||||||||||||| || || || |||||||  | |||||||||||||||||| ||||| ||||| ||||    
T  15758345 ccctcaatttgattatagcccttggccaccaaacgtgctttgtatctttcaatggaaccatcaacattgt 15758276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 21028561 - 21028610
Alignment:
Q  5 agatcaccatgaagaaaagcattgttgacatctagttggtgcaggtgcca 54  Q
    ||||| ||||| ||||||||||| ||||||||||||||||| || |||||    
T  21028561 agatccccatgcagaaaagcattattgacatctagttggtgaagatgcca 21028610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 26360592 - 26360664
Alignment:
Q  134 agaccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatagaaccgtcaactttgt 206  Q
    ||||||||||| |||||||| |||||||| || ||||| |||||||| ||||||||||| || ||||| ||||    
T  26360592 agaccctcaatctgattgtaccctttagcaactagtctggctttgtacctttcaatagagccatcaaccttgt 26360664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 18498921 - 18498979
Alignment:
Q  134 agaccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaataga 192  Q
    ||||||||||| |||||||| |||||||| || ||||| |||||||| |||||||||||    
T  18498921 agaccctcaatctgattgtaccctttagcaactagtctggctttgtacctttcaataga 18498979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 27035251 - 27035320
Alignment:
Q  132 caagaccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatagaaccgtcaac 201  Q
    ||||||| ||||||||| |||| || || || ||||||||||||||||||||||||| ||| || |||||    
T  27035251 caagaccttcaatttgactgtatcccttggcaaccagtcttgctttgtatctttcaacagatccatcaac 27035320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 13131790 - 13131714
Alignment:
Q  140 tcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatagaaccgtcaactttgtacttgattct 216  Q
    |||||||||||||| || ||||| |||||||| ||||| || || || |||||||| ||| | ||||||||||||||    
T  13131790 tcaatttgattgtatcccttagctaccagtctagctttatacctctctatagaaccatcatcattgtacttgattct 13131714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 191
Target Start/End: Original strand, 20041898 - 20041957
Alignment:
Q  132 caagaccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatag 191  Q
    |||||||||| | ||| ||||| || ||||| ||||||||||||||||| ||||||||||    
T  20041898 caagaccctccacttggttgtatcccttagcaaccagtcttgctttgtacctttcaatag 20041957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 18498798 - 18498874
Alignment:
Q  11 ccatgaagaaaagcattgttgacatctagttggtgcaggtgccagttatgaatagatgcaatagcaagaagagttct 87  Q
    ||||||||||| ||||| || ||||| ||||| || |  ||||| ||||||||||| |||| ||| |||||||||||    
T  18498798 ccatgaagaaatgcattattcacatcaagttgatgtaaatgccaattatgaatagaagcaacagctagaagagttct 18498874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 26360469 - 26360545
Alignment:
Q  11 ccatgaagaaaagcattgttgacatctagttggtgcaggtgccagttatgaatagatgcaatagcaagaagagttct 87  Q
    ||||||||||| ||||| || ||||| ||||| || |  ||||| ||||||||||| |||| ||| |||||||||||    
T  26360469 ccatgaagaaatgcattattcacatcaagttgatgtaaatgccaattatgaatagaagcaacagctagaagagttct 26360545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27035120 - 27035164
Alignment:
Q  1 ttgtagatcaccatgaagaaaagcattgttgacatctagttggtg 45  Q
    ||||| ||||||||| | ||| |||||||||||||||||||||||    
T  27035120 ttgtaaatcaccatgcataaatgcattgttgacatctagttggtg 27035164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 2360762 - 2360708
Alignment:
Q  137 ccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatag 191  Q
    ||||||||||||||||||||||| || |||| ||||||||| ||||| |||||||    
T  2360762 ccctcaatttgattgtaacctttggcaaccaatcttgctttatatctctcaatag 2360708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 40335432 - 40335363
Alignment:
Q  11 ccatgaagaaaagcattgttgacatctagttggtgcaggtgccagttatgaatagatgcaatagcaagaa 80  Q
    ||||| ||||| ||||| |||||||| ||||| || || ||||||||||| |||||||| | ||||||||    
T  40335432 ccatgcagaaatgcattattgacatcaagttgatgaagatgccagttatgcatagatgccaaagcaagaa 40335363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 8837230 - 8837154
Alignment:
Q  140 tcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatagaaccgtcaactttgtacttgattct 216  Q
    |||||||||||||| || ||||| |||||||| ||||| || || || |||||||| ||| | ||||||||||||||    
T  8837230 tcaatttgattgtatcccttagctaccagtctagctttatacctctctatagaaccatcagcattgtacttgattct 8837154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 55311166 - 55311090
Alignment:
Q  140 tcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatagaaccgtcaactttgtacttgattct 216  Q
    |||||||||||||| || ||||| |||||||| ||||| || || || |||||||| ||| | ||||||||||||||    
T  55311166 tcaatttgattgtatcccttagctaccagtctagctttatacctctctatagaaccatcagcattgtacttgattct 55311090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 37193205 - 37193159
Alignment:
Q  140 tcaatttgattgtaacctttagccaccagtcttgctttgtatctttc 186  Q
    |||| |||||| || ||||||||||||||||| ||||||||||||||    
T  37193205 tcaacttgattatatcctttagccaccagtctagctttgtatctttc 37193159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 19585787 - 19585856
Alignment:
Q  132 caagaccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatagaaccgtcaac 201  Q
    |||| |||||||| ||||||||||| || || || | ||| ||||||||||||||||| ||||| |||||    
T  19585787 caagtccctcaatctgattgtaaccctttgcaactaatctggctttgtatctttcaatggaaccatcaac 19585856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 12286499 - 12286435
Alignment:
Q  137 ccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaatagaaccgtcaac 201  Q
    |||||||| ||||||||||| || || || | ||| ||||||||||||||||| ||||| |||||    
T  12286499 ccctcaatctgattgtaaccctttgcaactaatctggctttgtatctttcaatggaaccatcaac 12286435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18963660 - 18963704
Alignment:
Q  1 ttgtagatcaccatgaagaaaagcattgttgacatctagttggtg 45  Q
    ||||| ||||||||| ||||||||||| || ||||||||||||||    
T  18963660 ttgtaaatcaccatgtagaaaagcattattcacatctagttggtg 18963704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0779 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0779
Description:

Target: scaffold0779; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 4967 - 4909
Alignment:
Q  134 agaccctcaatttgattgtaacctttagccaccagtcttgctttgtatctttcaataga 192  Q
    ||||||||||| |||||||| |||||||| || | ||| |||||||| |||||||||||    
T  4967 agaccctcaatctgattgtaccctttagcaactaatctggctttgtacctttcaataga 4909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University