View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12060_low_17 (Length: 203)
Name: NF12060_low_17
Description: NF12060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12060_low_17 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 5e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 9105737 - 9105541
Alignment:
| Q |
7 |
gagagaagaatactcaacctgccaaaaagagagtgactaatagacaaattggtgatcaatcaactcctcaacaaagcgagaagaatgctcaacctgtcaa |
106 |
Q |
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| T |
9105737 |
gagagaagaatactcaacctgccaaaaagagagtgaataatagacaaattggtgatcaatcagctcctcaacaaagcgagaagaatgctcaacctgtcaa |
9105638 |
T |
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| Q |
107 |
aaagaggttgagcaaagtcattcgtaattcatcagctcctcaacacaaagagaagaatatgcagcctatcgaaagtgagatgaatgatcagcctacc |
203 |
Q |
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| T |
9105637 |
aaagaggttgagcaaagtcattcgtaattcatcagctcctcaacacaaagagaagaatatgcagcctaccgaaagtgagatgaacgatcagcctacc |
9105541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 9105804 - 9105707
Alignment:
| Q |
12 |
aagaatactcaacctgccaaaaagagagtgactaatagacaaattggtgatcaatcaactcctcaacaaagcgagaagaatgctcaacctgtcaaaaaga |
111 |
Q |
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| T |
9105804 |
aagaatgctcagcctgccaaaaagagggtga---atagacaaattggtgattcaccaactcctcaacacggagagaagaatactcaacctgccaaaaaga |
9105708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 9105834 - 9105778
Alignment:
| Q |
57 |
ggtgatcaatcaactcctcaacaaagcgagaagaatgctcaacctgtcaaaaagagg |
113 |
Q |
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| T |
9105834 |
ggtgatccatcagctcctccacaaagcgataagaatgctcagcctgccaaaaagagg |
9105778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 57 - 174
Target Start/End: Original strand, 41076135 - 41076252
Alignment:
| Q |
57 |
ggtgatcaatcaactcctcaacaaagcgagaagaatgctcaacctgtcaaaaagaggttgagcaaagtcattcgtaattcatcagctcctcaacacaaag |
156 |
Q |
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||||||| |||| |||||| ||||||||| |||| |||||||| || |||||||||| | | | | ||| || |||||||||||||||||||||||| |
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| T |
41076135 |
ggtgatccatcagctcctccacaaagcgataagattgctcaacttgccaaaaagagggtcaatagacaaattggtgattcatcagctcctcaacacaaag |
41076234 |
T |
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| Q |
157 |
agaagaatatgcagccta |
174 |
Q |
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| T |
41076235 |
agaagaatatgcagccta |
41076252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 175
Target Start/End: Complemental strand, 22819971 - 22819905
Alignment:
| Q |
108 |
aagaggttgagcaaagtcattcgtaattcatcagctcctcaacacaaagagaagaatatgcagcctat |
175 |
Q |
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| T |
22819971 |
aagagggtgagtaaagt-attggtaattcaccagctcctcaacataaagagaagaatatgcagactat |
22819905 |
T |
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