View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12060_low_3 (Length: 554)
Name: NF12060_low_3
Description: NF12060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12060_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 6 - 537
Target Start/End: Complemental strand, 44444580 - 44444050
Alignment:
| Q |
6 |
agatgtatttaacgttttgtttgaaagttatgagggaaaaggactggaagggctttggagggaagagggggaagggaaacacgggaatccttcacnnnnn |
105 |
Q |
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| T |
44444580 |
agatgtatttaacgttttgtttgaaagttatgagggaaaaggactggaagggctttggagggaagagggggaagggaaacacaggaatccttcacttttt |
44444481 |
T |
|
| Q |
106 |
nnnccaattttgaaattgagaaaataatgcatttgaaaatttattcaaaatcctctaaagtcttccaatgggttttttaagctcccctgtaatggatggt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44444480 |
tt-ccaattttgaaattgagaaaataatgcatttgaaaatttattcaaaatcctctaaagtcttccaatgggttttttaagctcccctgtaatggatggt |
44444382 |
T |
|
| Q |
206 |
tttagtccagtaaataataaaatgaagggaatactcacccttgcctttcccttttattgctttcatcctcaaaggcatcccctatttccctttaaagtac |
305 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| |
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| T |
44444381 |
tttagtccagtaaataataaaatgaagggactactcacccttccctttcccttttattcctttcatcctcaaagtcctcccctatttccctttaaagtac |
44444282 |
T |
|
| Q |
306 |
tctcatacgcctaagttgagatattgtaaaggacagcaaaacatgtaaactctcattcaaagtaaatttccatttaagagctgagcatgtgtgttatgga |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44444281 |
tctcatacgcctaagttgagatattgtaaaggacagcaaaacatgtaaactctcattcaaagtaaatttccatttaagagctgagcatgtgtgttatgga |
44444182 |
T |
|
| Q |
406 |
gaagaagatgcacctcaccccttcggcccttcccttcaactttttaacttaaaaatgtgatattcatcttgctttatgaatgctttgtaatccatttcag |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44444181 |
gaagaagatgcacctcaccccttcggcccttcccttcaactttttaacttaaaaatgtgatattcatcttgctttatgaatgctttgtaatccatttcag |
44444082 |
T |
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| Q |
506 |
attcactcatgtatagactcttaactagaagg |
537 |
Q |
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| T |
44444081 |
attcactcatgtatagactcttaactagaagg |
44444050 |
T |
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