View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12060_low_4 (Length: 505)

Name: NF12060_low_4
Description: NF12060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12060_low_4
NF12060_low_4
[»] chr7 (40 HSPs)
chr7 (171-488)||(12633941-12634253)
chr7 (32-139)||(38613504-38613611)
chr7 (4-133)||(33038791-33038921)
chr7 (35-133)||(47341712-47341810)
chr7 (5-133)||(2167479-2167608)
chr7 (13-137)||(40784342-40784466)
chr7 (5-133)||(46996697-46996826)
chr7 (4-133)||(38614906-38615035)
chr7 (5-133)||(23953805-23953934)
chr7 (4-133)||(46812576-46812706)
chr7 (5-133)||(27955370-27955499)
chr7 (14-135)||(8423286-8423407)
chr7 (14-133)||(35344295-35344414)
chr7 (5-133)||(2492327-2492455)
chr7 (42-133)||(40785548-40785639)
chr7 (269-374)||(19626098-19626203)
chr7 (259-372)||(28300731-28300843)
chr7 (42-134)||(30108564-30108656)
chr7 (42-133)||(8421416-8421507)
chr7 (42-133)||(35342425-35342516)
chr7 (42-133)||(45465184-45465275)
chr7 (247-372)||(19848426-19848546)
chr7 (54-134)||(38614804-38614884)
chr7 (60-135)||(33037691-33037766)
chr7 (259-372)||(5350342-5350455)
chr7 (42-133)||(4321038-4321129)
chr7 (42-133)||(46994660-46994751)
chr7 (264-374)||(3215215-3215325)
chr7 (307-373)||(23114242-23114307)
chr7 (32-138)||(45463665-45463771)
chr7 (42-131)||(46810707-46810796)
chr7 (60-132)||(3690151-3690223)
chr7 (309-377)||(23416580-23416647)
chr7 (42-133)||(2168834-2168925)
chr7 (247-374)||(36656818-36656945)
chr7 (60-110)||(33775431-33775481)
chr7 (60-110)||(36762698-36762748)
chr7 (13-94)||(34776919-34777000)
chr7 (307-372)||(45843753-45843818)
chr7 (242-370)||(23416319-23416447)
[»] chr4 (47 HSPs)
chr4 (248-488)||(31228882-31229121)
chr4 (13-133)||(44558497-44558617)
chr4 (14-135)||(47941809-47941930)
chr4 (240-372)||(41222955-41223087)
chr4 (14-133)||(10372711-10372830)
chr4 (11-112)||(27624827-27624928)
chr4 (247-372)||(50859398-50859523)
chr4 (16-133)||(51041938-51042054)
chr4 (14-133)||(10762581-10762700)
chr4 (14-133)||(44794765-44794884)
chr4 (13-135)||(2827405-2827524)
chr4 (13-133)||(4519376-4519496)
chr4 (42-133)||(4520451-4520542)
chr4 (171-374)||(35292636-35292841)
chr4 (5-138)||(35996058-35996192)
chr4 (5-133)||(2350502-2350631)
chr4 (264-377)||(48085202-48085314)
chr4 (269-369)||(25054764-25054864)
chr4 (269-374)||(13779927-13780032)
chr4 (269-374)||(35033214-35033319)
chr4 (42-133)||(39923007-39923098)
chr4 (60-133)||(42879275-42879348)
chr4 (60-133)||(43778389-43778462)
chr4 (60-133)||(44992808-44992881)
chr4 (257-370)||(46142604-46142717)
chr4 (60-133)||(47942764-47942837)
chr4 (65-133)||(10767973-10768041)
chr4 (172-374)||(21261014-21261208)
chr4 (255-323)||(55842085-55842153)
chr4 (255-373)||(4292002-4292119)
chr4 (42-133)||(5486052-5486143)
chr4 (42-125)||(44792942-44793025)
chr4 (60-111)||(51040757-51040808)
chr4 (60-133)||(10371057-10371130)
chr4 (60-133)||(39085170-39085243)
chr4 (255-323)||(55777905-55777973)
chr4 (43-133)||(230436-230526)
chr4 (60-138)||(2828429-2828507)
chr4 (32-133)||(5484540-5484641)
chr4 (32-133)||(39083639-39083740)
chr4 (42-134)||(35997767-35997859)
chr4 (171-207)||(41809131-41809167)
chr4 (42-110)||(44556643-44556711)
chr4 (32-133)||(39921494-39921595)
chr4 (32-133)||(42880778-42880879)
chr4 (264-372)||(26829352-26829459)
chr4 (32-132)||(39189383-39189483)
[»] chr3 (43 HSPs)
chr3 (8-133)||(33113179-33113304)
chr3 (5-133)||(18430266-18430395)
chr3 (5-133)||(45257215-45257344)
chr3 (5-138)||(48633872-48634006)
chr3 (13-133)||(24382897-24383017)
chr3 (13-133)||(40508915-40509035)
chr3 (17-133)||(23774152-23774268)
chr3 (5-133)||(31887447-31887576)
chr3 (14-133)||(39641844-39641963)
chr3 (13-134)||(23888776-23888897)
chr3 (277-377)||(24373430-24373530)
chr3 (14-138)||(41021008-41021132)
chr3 (171-373)||(42028564-42028758)
chr3 (5-131)||(33852665-33852792)
chr3 (15-133)||(2977335-2977453)
chr3 (171-374)||(44714005-44714210)
chr3 (17-135)||(51454258-51454376)
chr3 (42-133)||(1847645-1847736)
chr3 (171-374)||(25046055-25046260)
chr3 (13-133)||(45898352-45898472)
chr3 (247-374)||(39439278-39439405)
chr3 (42-133)||(45897050-45897141)
chr3 (259-372)||(2144552-2144664)
chr3 (269-374)||(32279041-32279146)
chr3 (60-112)||(24381765-24381817)
chr3 (42-133)||(2975460-2975551)
chr3 (42-133)||(23887198-23887289)
chr3 (42-133)||(33111841-33111932)
chr3 (306-372)||(35231285-35231351)
chr3 (43-112)||(31885539-31885608)
chr3 (42-137)||(48635373-48635468)
chr3 (60-110)||(18428772-18428822)
chr3 (60-133)||(33850982-33851055)
chr3 (255-323)||(25909519-25909587)
chr3 (309-377)||(27011867-27011934)
chr3 (42-134)||(40508492-40508584)
chr3 (65-133)||(40998515-40998583)
chr3 (13-96)||(53190783-53190866)
chr3 (5-78)||(1845839-1845913)
chr3 (171-217)||(32279205-32279251)
chr3 (272-373)||(40022935-40023036)
chr3 (32-96)||(3152261-3152325)
chr3 (171-219)||(27012016-27012064)
[»] chr1 (43 HSPs)
chr1 (5-133)||(42134482-42134611)
chr1 (5-134)||(18183939-18184068)
chr1 (5-138)||(46638802-46638936)
chr1 (172-373)||(15582249-15582447)
chr1 (5-133)||(44157433-44157562)
chr1 (4-133)||(35479969-35480099)
chr1 (5-133)||(36895505-36895634)
chr1 (5-108)||(45380979-45381083)
chr1 (264-374)||(34970797-34970907)
chr1 (248-377)||(41404814-41404943)
chr1 (60-133)||(33685299-33685372)
chr1 (14-134)||(27940607-27940727)
chr1 (14-133)||(47269461-47269580)
chr1 (247-374)||(48046983-48047110)
chr1 (264-373)||(7521707-7521816)
chr1 (247-372)||(32573691-32573816)
chr1 (5-83)||(31801683-31801762)
chr1 (60-134)||(33679258-33679332)
chr1 (259-372)||(29465473-29465585)
chr1 (259-372)||(35306222-35306335)
chr1 (42-110)||(18180523-18180591)
chr1 (42-125)||(27952500-27952583)
chr1 (32-134)||(5783363-5783465)
chr1 (60-133)||(11152545-11152618)
chr1 (42-134)||(5784867-5784959)
chr1 (171-219)||(42366703-42366751)
chr1 (257-372)||(2664245-2664359)
chr1 (42-133)||(31803700-31803791)
chr1 (60-133)||(45379085-45379158)
chr1 (60-133)||(47264124-47264197)
chr1 (242-355)||(49765566-49765679)
chr1 (240-348)||(8099696-8099804)
chr1 (399-487)||(45848724-45848815)
chr1 (13-96)||(4855970-4856053)
chr1 (172-219)||(41404959-41405006)
chr1 (399-482)||(41418965-41419051)
chr1 (60-110)||(35478110-35478160)
chr1 (311-377)||(40641438-40641504)
chr1 (174-207)||(50677404-50677437)
chr1 (309-377)||(42366564-42366631)
chr1 (42-110)||(46636788-46636856)
chr1 (264-304)||(50138454-50138494)
chr1 (306-370)||(51195091-51195155)
[»] chr5 (33 HSPs)
chr5 (4-135)||(43318054-43318186)
chr5 (13-133)||(35292386-35292505)
chr5 (21-133)||(38596868-38596980)
chr5 (4-133)||(18728596-18728726)
chr5 (13-133)||(38178097-38178217)
chr5 (13-133)||(38205321-38205441)
chr5 (4-133)||(35395333-35395463)
chr5 (171-373)||(4944426-4944619)
chr5 (13-133)||(33256400-33256520)
chr5 (4-133)||(32087514-32087644)
chr5 (275-377)||(7505334-7505436)
chr5 (247-374)||(11617827-11617953)
chr5 (42-141)||(32089925-32090024)
chr5 (42-133)||(40330515-40330606)
chr5 (240-349)||(21521456-21521565)
chr5 (240-349)||(21532022-21532131)
chr5 (269-374)||(30085583-30085688)
chr5 (243-348)||(41484266-41484371)
chr5 (299-478)||(9161599-9161774)
chr5 (42-136)||(33257760-33257854)
chr5 (60-137)||(32835872-32835949)
chr5 (60-136)||(42619286-42619362)
chr5 (294-372)||(16596784-16596862)
chr5 (40-96)||(24498065-24498121)
chr5 (42-110)||(35291071-35291139)
chr5 (13-96)||(17574355-17574438)
chr5 (42-133)||(18726565-18726656)
chr5 (171-217)||(30085727-30085773)
chr5 (17-66)||(38597012-38597061)
chr5 (292-348)||(16921444-16921500)
chr5 (42-106)||(24232179-24232243)
chr5 (42-110)||(38176655-38176723)
chr5 (42-110)||(38203879-38203947)
[»] chr8 (36 HSPs)
chr8 (4-133)||(42897768-42897898)
chr8 (13-136)||(1320614-1320737)
chr8 (14-135)||(31201148-31201269)
chr8 (16-133)||(33160155-33160272)
chr8 (13-133)||(37526027-37526147)
chr8 (4-138)||(462364-462499)
chr8 (174-373)||(29844924-29845124)
chr8 (13-133)||(32822361-32822481)
chr8 (5-133)||(38882792-38882921)
chr8 (34-138)||(25373614-25373718)
chr8 (34-138)||(25707293-25707397)
chr8 (13-133)||(31821418-31821538)
chr8 (259-372)||(20307721-20307834)
chr8 (259-372)||(21094354-21094467)
chr8 (4-96)||(33750378-33750471)
chr8 (247-372)||(34924039-34924164)
chr8 (259-372)||(44605891-44606004)
chr8 (5-133)||(8654500-8654628)
chr8 (42-133)||(40019156-40019247)
chr8 (42-134)||(33748331-33748423)
chr8 (42-125)||(461184-461267)
chr8 (306-372)||(14111691-14111757)
chr8 (42-112)||(37524879-37524949)
chr8 (60-133)||(32824289-32824362)
chr8 (60-132)||(38881429-38881501)
chr8 (42-133)||(31199485-31199576)
chr8 (171-218)||(42024662-42024709)
chr8 (13-123)||(8609811-8609921)
chr8 (60-110)||(31823494-31823544)
chr8 (269-374)||(38680467-38680573)
chr8 (60-133)||(33368759-33368832)
chr8 (42-111)||(42894798-42894867)
chr8 (13-133)||(9184383-9184503)
chr8 (13-83)||(13108360-13108430)
chr8 (40-112)||(11031450-11031522)
chr8 (42-110)||(24526919-24526987)
[»] chr2 (32 HSPs)
chr2 (5-133)||(37417273-37417402)
chr2 (16-132)||(25619661-25619777)
chr2 (13-129)||(39560-39676)
chr2 (22-133)||(15432328-15432439)
chr2 (4-133)||(29909654-29909784)
chr2 (13-129)||(42879360-42879475)
chr2 (14-133)||(15372499-15372618)
chr2 (14-133)||(41706539-41706658)
chr2 (164-374)||(10354842-10355054)
chr2 (269-374)||(17999014-17999119)
chr2 (240-374)||(28198526-28198660)
chr2 (243-373)||(28219680-28219810)
chr2 (13-133)||(39401-39521)
chr2 (37-133)||(42001610-42001706)
chr2 (257-377)||(22017709-22017829)
chr2 (42-133)||(28248175-28248266)
chr2 (60-133)||(41160-41233)
chr2 (32-133)||(361445-361546)
chr2 (42-138)||(41708430-41708526)
chr2 (42-133)||(11021533-11021624)
chr2 (42-133)||(15373888-15373979)
chr2 (306-372)||(12432863-12432928)
chr2 (32-134)||(28246662-28246764)
chr2 (5-81)||(92342-92419)
chr2 (13-70)||(11315339-11315396)
chr2 (60-133)||(42880829-42880902)
chr2 (42-133)||(37418769-37418860)
chr2 (275-377)||(23701629-23701730)
chr2 (42-133)||(33193-33284)
chr2 (13-123)||(16763086-16763196)
chr2 (309-377)||(44247014-44247081)
chr2 (171-207)||(44247175-44247211)
[»] scaffold0022 (4 HSPs)
scaffold0022 (258-377)||(43493-43612)
scaffold0022 (258-377)||(77213-77332)
scaffold0022 (171-212)||(43389-43430)
scaffold0022 (171-212)||(77109-77150)
[»] scaffold0477 (1 HSPs)
scaffold0477 (14-135)||(6639-6760)
[»] chr6 (17 HSPs)
chr6 (14-135)||(4641353-4641474)
chr6 (16-110)||(3018439-3018533)
chr6 (14-136)||(29077325-29077447)
chr6 (14-136)||(29112297-29112419)
chr6 (14-133)||(2968139-2968258)
chr6 (42-133)||(17950561-17950652)
chr6 (255-372)||(10871928-10872045)
chr6 (271-369)||(29644618-29644716)
chr6 (259-372)||(10144760-10144872)
chr6 (60-133)||(4646234-4646307)
chr6 (60-133)||(29114794-29114867)
chr6 (60-133)||(30639611-30639684)
chr6 (42-133)||(35174391-35174482)
chr6 (271-369)||(7314234-7314332)
chr6 (269-370)||(13106518-13106619)
chr6 (32-133)||(17952065-17952166)
chr6 (63-132)||(31210461-31210530)
[»] scaffold0039 (1 HSPs)
scaffold0039 (197-372)||(57622-57794)
[»] scaffold0011 (1 HSPs)
scaffold0011 (271-373)||(8574-8675)
[»] scaffold1041 (1 HSPs)
scaffold1041 (34-110)||(2121-2197)
[»] scaffold0204 (1 HSPs)
scaffold0204 (269-371)||(11724-11826)
[»] scaffold0075 (1 HSPs)
scaffold0075 (306-372)||(12156-12221)
[»] scaffold0147 (1 HSPs)
scaffold0147 (307-368)||(25687-25748)
[»] scaffold0110 (1 HSPs)
scaffold0110 (309-377)||(37940-38007)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 171 - 488
Target Start/End: Complemental strand, 12634253 - 12633941
Alignment:
Q  171 aggctctgtttggataacttaaaactaacggaacggagcggaatggaacaaaataaaattgaacggaat--aacggagtggaaaaaatattccactccac 268  Q
    ||||||||||||||||||||||||||||||||     ||||||| ||| | ||| |||||||||| |||  ||||||| |||||||||||||||||||||    
T  12634253 aggctctgtttggataacttaaaactaacgga-----gcggaatagaa-agaatgaaattgaacgaaatggaacggagcggaaaaaatattccactccac 12634160  T
Q  269 tgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttac 368  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  12634159 tgtttggatattttatgacgaaatggaataaatttcacattccattgtttggaaagtcgacggaacggaatgaattataacatttttattccaattatac 12634060  T
Q  369 cctttatttnnnnnnnncattaataggtgaaattcttaactcaattcaatcaatgtggttattttggcgtgttcatgagtagcaccaatataaatggttc 468  Q
    |||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12634059 cctttattt-aaaaaaacattaataggtgaaattcttaactcaattcaatcaatgtggttattttggcgtgttcatgagtagcaccaatataaatagttc 12633961  T
Q  469 tttgaaacgagtaccttcgt 488  Q
     |||||||||||||||||||    
T  12633960 gttgaaacgagtaccttcgt 12633941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 38613504 - 38613611
Alignment:
Q  32 tggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcac 131  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| |||||| ||| || |||||||||||||||    
T  38613504 tggacgtctgacaaattcagggactaagttgatatttcgcataattgagggatgaatttggccgacccgtgaaaattgaaggacgaatttgatggttcac 38613603  T
Q  132 tcgatttg 139  Q
    ||||||||    
T  38613604 tcgatttg 38613611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 33038791 - 33038921
Alignment:
Q  4 agagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgta 102  Q
    |||||||||| ||||||||||||||||  ||||||||||| ||||||||| |||| |||||||||||||||||||||||||||| |||| ||||||| ||    
T  33038791 agagcacttggacggagggacctttttgatggacgtctgaaaaattcagggactaagttgatatttcgcataattgagggatgaatttgaccgacccata 33038890  T
Q  103 aaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||| || ||||||||| |||||||    
T  33038891 aaaattcaaggacgaatttgatgattcactc 33038921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 133
Target Start/End: Original strand, 47341712 - 47341810
Alignment:
Q  35 acgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||| || |||||||||||||||||    
T  47341712 acgtctgacaaattcagggactaagttgatatttcgcataattgagggatgaatttggccgacccgtgaaaattcaaggacgaatttgatggttcactc 47341810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 2167608 - 2167479
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| ||||||||||||||||  ||| ||||||||||||||||| |||| |||||||||||||||||||||||||||| |||| ||||||||||     
T  2167608 gagcacttggacggagggacctttttgatgggcgtctgacaaattcagggactaagttgatatttcgcataattgagggatgaatttgaccgacccgtac 2167509  T
Q  104 aaattcaagaactaatttgatggttcactc 133  Q
     |||||||| ||  ||||||||||||||||    
T  2167508 taattcaaggacatatttgatggttcactc 2167479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 40784466 - 40784342
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||||||||||||||  |||| ||||||||||||||   |||| ||||||||||||||||||||| |||||| ||| || ||| ||||||||||||||    
T  40784466 gacggagggacctttttgatggatgtctgacaaattcaaagactaagttgatatttcgcataattgaaggatgaatttagctgacgcgtaaaaattcaag 40784367  T
Q  113 aactaatttgatggttcactcgatt 137  Q
    ||| |||||||||||||||||||||    
T  40784366 aacgaatttgatggttcactcgatt 40784342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 46996697 - 46996826
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||  ||||||||| ||| |    
T  46996697 gagcacttggacggagggacctttttgatggacgtctgacaaattcagtgactaagttgatatttcgcataattgagggacgaagttggccgacgcgtga 46996796  T
Q  104 aaattcaagaactaatttgatggttcactc 133  Q
    ||||||| | || |||||||||||||||||    
T  46996797 aaattcagggacgaatttgatggttcactc 46996826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 38614906 - 38615035
Alignment:
Q  4 agagcactt-gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgta 102  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||  ||||||||     
T  38614906 agagcacttagacggagggacatttttat-ggacgtctgacaaattcagggactaagttaatatttcgcataattgagggatgaatttgatcgacccgtg 38615004  T
Q  103 aaaattcaagaactaatttgatggttcactc 133  Q
    |||||| ||| || ||||||||| |||||||    
T  38615005 aaaatttaaggacgaatttgatgtttcactc 38615035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 23953934 - 23953805
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| ||||||||||||||||  | ||||||||||||||||| | |||| ||||||||||||||||||||| ||| || |||  |||||||||||    
T  23953934 gagcacttggacggagggacctttttgattgacgtctgacaaattcacggactaagttgatatttcgcataattgatggacgaattttaccgacccgtaa 23953835  T
Q  104 aaattcaagaactaatttgatggttcactc 133  Q
    ||||| ||| || |||||||||||||||||    
T  23953834 aaatttaaggacgaatttgatggttcactc 23953805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 46812576 - 46812706
Alignment:
Q  4 agagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgta 102  Q
    |||||||||| |||||  |||||||||  ||||||||||||||||| ||| ||||  |||||||||| | |||||||||||||| |||||||||| ||||    
T  46812576 agagcacttggacggaatgacctttttgatggacgtctgacaaatttagggactaaattgatatttcacgtaattgagggatgaatttggccgactcgta 46812675  T
Q  103 aaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||| || || ||||||||||||||    
T  46812676 aaaattcaaggacgaagttgatggttcactc 46812706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 27955499 - 27955370
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| |||||||||||| |||  |||||||||||||||||||| || || |||||||||||| | ||||||||||||| ||| || || ||||||    
T  27955499 gagcacttggacggagggacctctttgatggacgtctgacaaattcagaaattaagttgatatttcgtaaaattgagggatgaatttagctgatccgtaa 27955400  T
Q  104 aaattcaagaactaatttgatggttcactc 133  Q
    ||||||||| || ||||||||| |||||||    
T  27955399 aaattcaaggacgaatttgatgattcactc 27955370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 8423286 - 8423407
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||||||||||||||  | ||||||||| ||||||||| | ||  ||||||||||||||||||||||||  | |||||| ||||||| |||||||| |     
T  8423286 acggagggacctttttgattgacgtctgataaattcagggattaaattgatatttcgcataattgagggacaaatttggctgacccgtgaaaattcaggg 8423385  T
Q  114 actaatttgatggttcactcga 135  Q
    ||||| ||||||||||||||||    
T  8423386 actaaattgatggttcactcga 8423407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 35344295 - 35344414
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||||||||||||||  ||||||||| | ||||||||| | ||  |||||||||||||||||||||||| || |||||| ||||||| |||||||  |     
T  35344295 acggagggacctttttgatggacgtcttataaattcagggattaaattgatatttcgcataattgagggacgaatttggctgacccgtgaaaattcgggg 35344394  T
Q  114 actaatttgatggttcactc 133  Q
    ||||| ||||||||||||||    
T  35344395 actaaattgatggttcactc 35344414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 2492455 - 2492327
Alignment:
Q  5 gagcacttga-cggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    |||||||||| |||||| || ||||||| |||||| ||| ||||||| | | || ||||||||||||||||||||| |||| |||||| |||||||||||    
T  2492455 gagcacttgaacggaggaacttttttat-ggacgtttgaaaaattcaagtattaagttgatatttcgcataattgaaggataattttgaccgacccgtaa 2492357  T
Q  104 aaattcaagaactaatttgatggttcactc 133  Q
    |||||| || || |||||||||||| ||||    
T  2492356 aaattcgaggacgaatttgatggtttactc 2492327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 40785548 - 40785639
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||| |||||||||| |||||||||| ||||| |||||||||||||| |||||||||| || || |||||| |||||||    
T  40785548 acaaattcagggattagattgatatttcacataattgagagatgaatttggccgacccgtgaaaattcaaggacgaaattgatgattcactc 40785639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 374
Target Start/End: Complemental strand, 19626203 - 19626098
Alignment:
Q  269 tgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttac 368  Q
    |||||||||||||||  |||||||||||| |||||  || || ||||||||||||||  | ||||| |||||| ||||||  ||||||||||| ||||||    
T  19626203 tgtttggatattttactacggaatggaactaattttccactcaattgtttggaaagtgaatggaacggaatgatttataatttttttattccatttttac 19626104  T
Q  369 ccttta 374  Q
    ||||||    
T  19626103 ccttta 19626098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 259 - 372
Target Start/End: Original strand, 28300731 - 28300843
Alignment:
Q  259 tccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttatt 358  Q
    |||| |||||||||||| |||||||||| |||  ||||   ||||  |||||||||||||||||||| |||||||  |||| ||||||||| ||||||||    
T  28300731 tccattccactgtttgggtattttatgatggagcggaatgcattttccattccattgtttggaaagttgacggaatggaataaattataac-tttttatt 28300829  T
Q  359 ccaattttaccctt 372  Q
    ||| ||||||||||    
T  28300830 ccatttttaccctt 28300843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 30108656 - 30108564
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactcg 134  Q
    ||||||||||| | ||  |||||||||||||||||||||||| ||  |||||||||||||||||||||| | || || |||||| ||||||||    
T  30108656 acaaattcagggattaaattgatatttcgcataattgagggacgaagttggccgacccgtaaaaattcagggacgaagttgatgattcactcg 30108564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 8421507 - 8421416
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  |||||||||||||||||||||||| || |||||||||||||| | |||||| | ||||| |||||| |||||||    
T  8421507 acaaattcagggattaaattgatatttcgcataattgagggacgaatttggccgacccgtgataattcagggactaagttgatgattcactc 8421416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 35342516 - 35342425
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  ||||||||||||||||||||||||  | |||||||||||||||| |||||| | ||||| |||||| |||||||    
T  35342516 acaaattcagggattaaattgatatttcgcataattgagggacaaatttggccgacccgtaataattcagggactaagttgatgattcactc 35342425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 45465184 - 45465275
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  |||||||||||||||||||||||| ||  ||| |||||||||||||||||||| || || |||||| |||||||    
T  45465184 acaaattcagggattaaattgatatttcgcataattgagggacgaagttgaccgacccgtaaaaattcaaggacgaagttgatgattcactc 45465275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 247 - 372
Target Start/End: Complemental strand, 19848546 - 19848426
Alignment:
Q  247 tggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattat 346  Q
    ||||| ||| |||||| |||| |||||||||| ||||||| |||| ||||| | |||  ||||||||||||||||||||  |||||||     || ||||    
T  19848546 tggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagttaacggaac-----gagttat 19848452  T
Q  347 aacatttttattccaattttaccctt 372  Q
    ||| |||||||| |||||||||||||    
T  19848451 aacttttttatttcaattttaccctt 19848426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 38614804 - 38614884
Alignment:
Q  54 actaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactcg 134  Q
    |||| |||||||||| ||||||||||||||||| |||| ||||||| |||||||||||| ||  | |||||| ||||||||    
T  38614804 actaagttgatattttgcataattgagggatgaatttgaccgacccataaaaattcaaggacgtagttgatgattcactcg 38614884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 33037766 - 33037691
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactcga 135  Q
    |||||||||| |||||||||||||||| |||||||||| | |||||||||||| || || |||||| || ||||||    
T  33037766 ttgatatttcacataattgagggatgaatttggccgacacataaaaattcaaggacgaacttgatgattgactcga 33037691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 372
Target Start/End: Complemental strand, 5350455 - 5350342
Alignment:
Q  259 tccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttatt 358  Q
    |||| |||| ||||||| ||| |||||| |||  |||||| ||||| ||||| |||||||||||||| |||| ||  |||| | ||||||| |||| |||    
T  5350455 tccaatccattgtttgggtatattatgatggatcggaacagatttctcattctattgtttggaaagttgacgaaatggaataagttataactttttaatt 5350356  T
Q  359 ccaattttaccctt 372  Q
     |||||||||||||    
T  5350355 tcaattttaccctt 5350342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 4321129 - 4321038
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  |||||||||||||||||| ||||| ||  ||||||||||||| |||||||| | || || |||||| |||||||    
T  4321129 acaaattcagggattaaattgatatttcgcataattaagggacgaagttggccgacccgtgaaaattcagggacgaagttgatgattcactc 4321038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 46994751 - 46994660
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  |||||||||||||||||||| ||| ||  ||||||||||||| |||||||| | || || |||||| |||||||    
T  46994751 acaaattcagggattaaattgatatttcgcataattgaaggacgaagttggccgacccgtgaaaattcagggacgaagttgatgattcactc 46994660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 374
Target Start/End: Original strand, 3215215 - 3215325
Alignment:
Q  264 tccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaat 363  Q
    |||| ||| |||||||||| |||||||||||||| || ||| || |||||| ||| |||| | |||||||| |||   |||||||| ||||||||||| |    
T  3215215 tccattgtgtggatattttctgacggaatggaactaacttctcactccattatttagaaaatggacggaacagaaaatattataacttttttattccatt 3215314  T
Q  364 tttacccttta 374  Q
    || | ||||||    
T  3215315 ttgatccttta 3215325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 373
Target Start/End: Complemental strand, 23114307 - 23114242
Alignment:
Q  307 attccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttacccttt 373  Q
    ||||||||||||||||||  |||||||   |||||||||||| ||||||||||||||| ||||||||    
T  23114307 attccattgtttggaaagcggacggaatgaaatgaattataa-atttttattccaattctacccttt 23114242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 45463771 - 45463665
Alignment:
Q  32 tggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcac 131  Q
    ||||||||  ||||||||||| ||||  |||||||||||   |||| ||||| || |||||||||||| | |||||||| | || || ||||||||||||    
T  45463771 tggacgtcaaacaaattcagggactattttgatatttcgttaaatttagggacgaatttggccgacccctgaaaattcagggacgaaattgatggttcac 45463672  T
Q  132 tcgattt 138  Q
    || ||||    
T  45463671 tcaattt 45463665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 46810796 - 46810707
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcac 131  Q
    ||||||||||| | ||  ||||||||||||||||||||||||  | ||||||||| |||| |||||||| | || || |||||| |||||    
T  46810796 acaaattcagggattaaattgatatttcgcataattgagggactaatttggccgatccgtgaaaattcagggacgaagttgatgattcac 46810707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 3690223 - 3690151
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcact 132  Q
    |||||||||||||||||||||| | ||  |||||||| | ||||||||||||| || || |||||| ||||||    
T  3690223 ttgatatttcgcataattgaggaacgaagttggccgaactgtaaaaattcaaggacgaagttgatgattcact 3690151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 23416580 - 23416647
Alignment:
Q  309 tccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccctttattt 377  Q
    |||||||||||| |||| |||||||  ||||| |||||||  ||||||||||||||||| |||||||||    
T  23416580 tccattgtttgggaagttgacggaatggaatgtattataat-tttttattccaattttaacctttattt 23416647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 2168834 - 2168925
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||| | ||||  |||||||||  | ||||| |||||||| ||||| ||||| ||||||||||||| || || |||||| |||||||    
T  2168834 acaaattcaaggactaaattgatatttttcttaattaagggatgaatttggacgaccagtaaaaattcaaggacgaagttgatgattcactc 2168925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 374
Target Start/End: Original strand, 36656818 - 36656945
Alignment:
Q  247 tggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattat 346  Q
    ||||| ||| ||| || |||| || |||||||||||||||||||||||||| || ||  |  |||||||||||||  ||  ||||||| ||| |  ||||    
T  36656818 tggaacaaaaattacattccattgcttggatattttatgacggaatggaactaactttccgctccattgtttggatcgtgaacggaacggaacgtgttat 36656917  T
Q  347 aacatttttattccaattttacccttta 374  Q
    ||| |||||||| || |||| |||||||    
T  36656918 aacttttttatttcatttttgcccttta 36656945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 33775481 - 33775431
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattca 110  Q
    |||||||||||||||||||| ||| ||  ||| ||||||||||||||||||    
T  33775481 ttgatatttcgcataattgaaggacgaagttgaccgacccgtaaaaattca 33775431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 36762698 - 36762748
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattca 110  Q
    |||||||||| |||||||||||||  | ||||||||| |||||||||||||    
T  36762698 ttgatatttcacataattgagggactaatttggccgatccgtaaaaattca 36762748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 34776919 - 34777000
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggcc 94  Q
    |||||||||||| ||||  ||||||||||  ||||||||| ||||  | ||||||||||| |||| ||| |||| |||||||    
T  34776919 gacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcaggaatgaatttggcc 34777000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 45843753 - 45843818
Alignment:
Q  307 attccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccctt 372  Q
    ||||| |||||||||||||  ||||||  |||||| ||||||| ||||||||||| ||| ||||||    
T  45843753 attccgttgtttggaaagtgaacggaatagaatgagttataacgtttttattccattttcaccctt 45843818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 370
Target Start/End: Original strand, 23416319 - 23416447
Alignment:
Q  242 cggagtggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatga 341  Q
    |||| ||||| |||||||| | |||| ||||||| |||| ||  | |||  |||||||||| |  ||||||||||||||||| |  ||||||  |||||     
T  23416319 cggaatggaataaatattctattccattgtttgggtattatacaatggagcggaacaaattacttattccattgtttggaaaatgaacggaatggaatgt 23416418  T
Q  342 attataacatttttattccaattttaccc 370  Q
     ||||||  ||||||||||| ||||||||    
T  23416419 gttataaattttttattccatttttaccc 23416447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 248 - 488
Target Start/End: Complemental strand, 31229121 - 31228882
Alignment:
Q  248 ggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattata 347  Q
    |||| ||||||| || |||||||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||||| |||||||| |||||| |||||    
T  31229121 ggaataaatatttcattccactgtttggatattttatgagagaatgaaacaaatttcacaatccattgtttggaaagttgacggaacggaatgagttata 31229022  T
Q  348 acatttttattccaattttaccctttatttnnnnnnnncattaataggtgaaattcttaactcaattcaatcaatgtggttattttggcgtgttcatgag 447  Q
    |||||||||||||||||||||| |||||||        ||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  31229021 acatttttattccaattttaccttttattt-aaaaagacattaataaatgaaattctcaactcaattcaatcaatgtggttattttggcgtgttcatcag 31228923  T
Q  448 tagcaccaatataaatggttctttgaaacgagtaccttcgt 488  Q
     ||||||  ||||||||||||||||||||||||||||||||    
T  31228922 cagcacctgtataaatggttctttgaaacgagtaccttcgt 31228882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 44558497 - 44558617
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||| ||||||||||  ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  44558497 gacggaaggacctttttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgagggatgaatttggccgacccgtgaaaattcaag 44558596  T
Q  113 aactaatttgatggttcactc 133  Q
     || || ||||||||||||||    
T  44558597 gacgaagttgatggttcactc 44558617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 47941930 - 47941809
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||||||||||||||  ||||||||||| ||||||||| | ||  ||||||||||||||||||||| || || |||| |||||||||||||||||| |     
T  47941930 acggagggacctttttgatggacgtctgataaattcagggattaaattgatatttcgcataattgagagacgaatttgaccgacccgtaaaaattcaggg 47941831  T
Q  114 actaatttgatggttcactcga 135  Q
    ||||| ||||||||||||||||    
T  47941830 actaaattgatggttcactcga 47941809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 240 - 372
Target Start/End: Original strand, 41222955 - 41223087
Alignment:
Q  240 aacggagtggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaat 339  Q
    |||||| ||||| ||| |||||| |||| |||||||||| ||||||| |||| ||||| | |||  ||||||||||||||||||||  ||||||| |||     
T  41222955 aacggaatggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagttaacggaacggaac 41223054  T
Q  340 gaattataacatttttattccaattttaccctt 372  Q
    || ||||||| ||||||||||||||||||||||    
T  41223055 gagttataacttttttattccaattttaccctt 41223087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 10372711 - 10372830
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||||||||||||||  ||||||||||||||||||||| |  |  ||||||||||||||||||||||||  | |||||||||| ||| |||||||| |     
T  10372711 acggagggacctttttgatggacgtctgacaaattcagggatgaaattgatatttcgcataattgagggactaatttggccgacgcgtgaaaattcaggg 10372810  T
Q  114 actaatttgatggttcactc 133  Q
    || |||||||||||||||||    
T  10372811 acgaatttgatggttcactc 10372830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 27624928 - 27624827
Alignment:
Q  11 ttgacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattca 110  Q
    ||||||||  |||||||||  ||||||||||||||||||||| |||| |||||||||||||||||||||  ||||| |||| || |||||||||||||||    
T  27624928 ttgacggaatgacctttttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgaaagatgaatttgaccaacccgtaaaaattca 27624829  T
Q  111 ag 112  Q
    ||    
T  27624828 ag 27624827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 247 - 372
Target Start/End: Complemental strand, 50859523 - 50859398
Alignment:
Q  247 tggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattat 346  Q
    ||||| ||| ||| || |||| |||||||||||||| |||||||||| ||| |||||| || |||||| |||||||||| |||||||  |||||| ||||    
T  50859523 tggaataaagattacattccattgtttggatattttttgacggaatgaaactaatttcccactccattatttggaaagtggacggaatggaatgagttat 50859424  T
Q  347 aacatttttattccaattttaccctt 372  Q
    ||| ||||||||||| ||||||||||    
T  50859423 aacttttttattccatttttaccctt 50859398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 51041938 - 51042054
Alignment:
Q  16 ggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaac 115  Q
    ||||||||||||||  || |||||||||||||||| | |||| ||||||||||| |||||||||||||||| |||| |||||| ||||||||| ||| ||    
T  51041938 ggagggacctttttgatg-acgtctgacaaattcatggactaagttgatatttcacataattgagggatgaatttgaccgacctgtaaaaatttaaggac 51042036  T
Q  116 taatttgatggttcactc 133  Q
     ||||||| |||||||||    
T  51042037 gaatttgacggttcactc 51042054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 10762700 - 10762581
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||||||||||||||  ||||||||||||||||||||| |  |  |||| |||||||||||||||||||  | |||||||||| ||| |||||||| |     
T  10762700 acggagggacctttttgatggacgtctgacaaattcagggatgaaattgaaatttcgcataattgagggactaatttggccgacgcgtgaaaattcaggg 10762601  T
Q  114 actaatttgatggttcactc 133  Q
    || |||||||||||||||||    
T  10762600 acgaatttgatggttcactc 10762581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 44794765 - 44794884
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||||||||||||||  ||||||||||| ||||||||| | ||  |||||||||||||||||||||||| || |||| |||||  || |||||||| |     
T  44794765 acggagggacctttttgatggacgtctgataaattcagggattaaattgatatttcgcataattgagggacgaatttgaccgacgtgtgaaaattcaggg 44794864  T
Q  114 actaatttgatggttcactc 133  Q
    ||||| ||||||||||||||    
T  44794865 actaaattgatggttcactc 44794884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 2827524 - 2827405
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||||||||||||||  ||||||||||||||||||| | |||| ||||||||||| ||||||||||||| |   |||||||||  || |||||| | |    
T  2827524 gacggagggacctttttgatggacgtctgacaaattcaaggactaagttgatatttcacataattgagggacg---ttggccgacgtgtgaaaatttagg 2827428  T
Q  113 aactaatttgatggttcactcga 135  Q
     || |||||||||||||||||||    
T  2827427 gacgaatttgatggttcactcga 2827405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 4519496 - 4519376
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||||||||||||||  || | |||| |||||||||    ||| | |||||||||||||||||||||||||| ||||||| ||| |||||||||||||    
T  4519496 gacggagggacctttttgatgaatgtctaacaaattcaaaggctaagctgatatttcgcataattgagggatgaatttggccaaccggtaaaaattcaag 4519397  T
Q  113 aactaatttgatggttcactc 133  Q
     || |||||||| ||||||||    
T  4519396 gacgaatttgattgttcactc 4519376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 4520451 - 4520542
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||| | |||||||||||| || || |||||| |||||||    
T  4520451 acaaattcaagaactaagttgatatttcgcataattgatggatgaatttggccgactcataaaaattcaaggacgaagttgatgattcactc 4520542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 171 - 374
Target Start/End: Complemental strand, 35292841 - 35292636
Alignment:
Q  171 aggctctgtttggataacttaaaactaacggaacggagcggaatggaacaaaataaaattgaacggaat--aacggagtggaaaaaatattccactccac 268  Q
    |||||||||||||||||  ||||||||||||| |||| |||||||||    |||   |  | |||||||  |||||  ||||| ||| ||| || | ||     
T  35292841 aggctctgtttggataatctaaaactaacggagcggaacggaatggagtggaatgggacgggacggaatggaacggcatggaataaaaatttcattacat 35292742  T
Q  269 tgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttac 368  Q
    ||||||||||||| | ||||||||||||| |||||| || |||||||||||||||||  || |||| |||    ||||||| ||||||||||||||||||    
T  35292741 tgtttggatatttcaagacggaatggaactaatttcccactccattgtttggaaagtgaacagaacggaacatgttataacttttttattccaattttac 35292642  T
Q  369 ccttta 374  Q
    ||||||    
T  35292641 ccttta 35292636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 35996192 - 35996058
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| ||||||||||||||||  ||||||||||| ||||||||| | ||  ||||||||| ||| |||||||||| || |||| ||||||| |||    
T  35996192 gagcacttggacggagggacctttttgatggacgtctgataaattcagggattaaattgatattttgcacaattgagggacgaatttgaccgacccataa 35996093  T
Q  104 aaattcaagaactaatttgatggttcactcgattt 138  Q
    |||| ||   ||||| |||||||||||||| ||||    
T  35996092 aaatccagagactaaattgatggttcactctattt 35996058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 2350502 - 2350631
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| || |||||||||||||  || |||||||| ||||||||  | ||  ||||||||||||||||||||||||  | |||||||||||| | |    
T  2350502 gagcacttggacagagggacctttttgatgaacgtctgataaattcagagattaaattgatatttcgcataattgagggacaaatttggccgacccatga 2350601  T
Q  104 aaattcaagaactaatttgatggttcactc 133  Q
    ||||||| | ||||| ||||||||||||||    
T  2350602 aaattcagggactaaattgatggttcactc 2350631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 48085314 - 48085202
Alignment:
Q  264 tccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaat 363  Q
    |||| ||||||||||||| | || |||||| | | |||||  |||||| ||||||| ||| |||||||||| |||| ||||||||| |||||||||||||    
T  48085314 tccattgtttggatattt-acgatggaatgaagctaattttccattcctttgtttgaaaaatcgacggaacggaattaattataacttttttattccaat 48085216  T
Q  364 tttaccctttattt 377  Q
    ||||||||||||||    
T  48085215 tttaccctttattt 48085202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 269 - 369
Target Start/End: Complemental strand, 25054864 - 25054764
Alignment:
Q  269 tgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttac 368  Q
    ||||||| ||||||| || ||||||||||||||||  || |||||| |||| ||||| |||||||  |||| ||||||||| ||||||||||||||||||    
T  25054864 tgtttgggtattttacgatggaatggaacaaatttaccactccattttttgaaaagttgacggaatagaataaattataacttttttattccaattttac 25054765  T
Q  369 c 369  Q
    |    
T  25054764 c 25054764  T

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Target: chr4; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 374
Target Start/End: Complemental strand, 13780032 - 13779927
Alignment:
Q  269 tgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttac 368  Q
    |||||||||||||||  |||||||||||| |||||  || |||||||||||||||||  | ||||| |||||| ||||||  ||||||||||| ||||||    
T  13780032 tgtttggatattttactacggaatggaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataatttttttattccatttttac 13779933  T
Q  369 ccttta 374  Q
    | ||||    
T  13779932 cattta 13779927  T

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Target: chr4; HSP #20
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 374
Target Start/End: Original strand, 35033214 - 35033319
Alignment:
Q  269 tgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttac 368  Q
    |||||||||||||||  |||||||||||| |||||  || |||||||||||||||||  | ||||| |||||| ||||||  ||||||||||| ||||||    
T  35033214 tgtttggatattttactacggaatggaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataatttttttattccatttttac 35033313  T
Q  369 ccttta 374  Q
    | ||||    
T  35033314 cattta 35033319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 39923007 - 39923098
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  |||||||||||||||||||||||| ||  |||||||||| ||||||||||| | || || ||||||||||||||    
T  39923007 acaaattcagggattaaattgatatttcgcataattgagggacgaagttggccgacctgtaaaaattcagggacgaaattgatggttcactc 39923098  T

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Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 42879348 - 42879275
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||||||| | || || |||||| |||||||    
T  42879348 ttgatatttcgcataattgagggacgaagttggccgacccgtaaaaattcagggacgaagttgatgattcactc 42879275  T

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Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 43778462 - 43778389
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||||||||||||||||| ||  ||| |||||||||||||||||||| || || |||||| |||||||    
T  43778462 ttgatatttcgcataattgagggacgaagttgaccgacccgtaaaaattcaaggacgaagttgatgattcactc 43778389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 44992881 - 44992808
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||||||||||||||||| ||  |||||||||||||||||||||| | || || |||||| |||||||    
T  44992881 ttgatatttcgcataattgagggacgaagttggccgacccgtaaaaattcagggacgaagttgatgattcactc 44992808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 370
Target Start/End: Complemental strand, 46142717 - 46142604
Alignment:
Q  257 attccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacattttta 356  Q
    |||||| |||| ||||||||||||| | ||||||  |||| ||| ||  |||||||||||||||||||   ||| ||  |||||||||||||| ||||||    
T  46142717 attccattccattgtttggatatttcacgacggagcggaataaaattttcattccattgtttggaaagagaacgaaatggaatgaattataactttttta 46142618  T
Q  357 ttccaattttaccc 370  Q
    ||||| ||||||||    
T  46142617 ttccatttttaccc 46142604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 47942764 - 47942837
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||||||||||||||||| || |||| ||||||||| | |||||| ||||||| |||||| |||||||    
T  47942764 ttgatatttcgcataattgagggacgaatttgaccgacccgtgataattcatgaactaagttgatgattcactc 47942837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 10767973 - 10768041
Alignment:
Q  65 atttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||||||||||||  | |||||||||| ||| |||||||| ||||||| ||||||||||||||    
T  10767973 atttcgcataattgagggactaatttggccgacgcgtgaaaattcaggaactaacttgatggttcactc 10768041  T

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Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 172 - 374
Target Start/End: Original strand, 21261014 - 21261208
Alignment:
Q  172 ggctctgtttggataacttaaaactaacggaacggagcggaatggaacaaaataaaattgaacggaataacggagtggaaaaaatattccactccactgt 271  Q
    ||||||||||||||||| ||||||||||| | |||||||||||||| |   ||  |||     |||||   ||||||||| ||| |||||| |||| |||    
T  21261014 ggctctgtttggataacctaaaactaacgaagcggagcggaatggagcgggatggaat-----ggaat---ggagtggaacaaagattccattccattgt 21261105  T
Q  272 ttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccct 371  Q
    || |||||| ||||||||||||  || |||||   | |||||||||||||||||  ||||||  |||| | ||||||| ||||||||||   ||||||||    
T  21261106 tttgatattatatgacggaatgagactaattttctactccattgtttggaaagtgaacggaatggaattagttataacttttttattccttatttaccct 21261205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 55842153 - 55842085
Alignment:
Q  255 atattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaa 323  Q
    |||||||| ||||||||||||| ||||||||| ||||||||| ||| ||| ||||| ||||||||||||    
T  55842153 atattccattccactgtttggacattttatgatggaatggaataaacttcccattcgattgtttggaaa 55842085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 373
Target Start/End: Original strand, 4292002 - 4292119
Alignment:
Q  255 atattccactccactgtttggatattttatgacggaatggaacaa-atttcacattccattgtttggaaagtcgacggaactgaatgaattataacattt 353  Q
    |||||| | |||| ||||||||||||||||||||||||| |   | |||||  ||||||||||||||||||| |||||||| |||||| ||||| |  ||    
T  4292002 atattcaattccattgtttggatattttatgacggaatgaatttagatttct-attccattgtttggaaagtggacggaacagaatgagttatagc-ctt 4292099  T
Q  354 ttattccaattttacccttt 373  Q
    | ||||||||||||||||||    
T  4292100 taattccaattttacccttt 4292119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 5486052 - 5486143
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| ||||  |||||||||||   |||| |||||||| |||||||||||| |||||||||| | || || ||||||||||||||    
T  5486052 acaaattcagggactattttgatatttcgttaaatttagggatgaatttggccgacccctaaaaattcagggacgaaattgatggttcactc 5486143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 44793025 - 44792942
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatg 125  Q
    ||||||||||| | ||  |||||||||||||||||||||||| || |||||||||||||| | |||||| | ||||| ||||||    
T  44793025 acaaattcagggattaaattgatatttcgcataattgagggacgaatttggccgacccgtgataattcagggactaagttgatg 44792942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 51040808 - 51040757
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaa 111  Q
    |||||||||||||||||||| |||||| |||||||||||||| |||||||||    
T  51040808 ttgatatttcgcataattgaaggatgaatttggccgacccgtgaaaattcaa 51040757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 10371130 - 10371057
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||||||||||||||||  | ||| |||||| ||| |||||||| | ||||| ||||||||||||||    
T  10371130 ttgatatttcgcataattgagggactaatttagccgacgcgtgaaaattcagggactaagttgatggttcactc 10371057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 39085170 - 39085243
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||||||||||||||||| ||  ||| |||||||||||||||||| | || || |||||| |||||||    
T  39085170 ttgatatttcgcataattgagggacgaagttgaccgacccgtaaaaattcagggacgaagttgatgattcactc 39085243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 55777973 - 55777905
Alignment:
Q  255 atattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaa 323  Q
    |||||||| |||||||||||||  |||||||| ||||||||| ||| ||| ||||| ||||||||||||    
T  55777973 atattccattccactgtttggactttttatgatggaatggaataaacttcccattcgattgtttggaaa 55777905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 230526 - 230436
Alignment:
Q  43 caaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||  ||||  |||||||||||||||||||||||| |||||||||||| || || ||| ||||| |  || |||||| |||||||    
T  230526 caaattcagagactaatttgatatttcgcataattgagggacgattttggccgatccttacaaactcaaggataaagttgatgattcactc 230436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 138
Target Start/End: Original strand, 2828429 - 2828507
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactcgattt 138  Q
    ||||||||||||||||||||||||  |  ||||||||||| |||||||||| | || || |||||| ||||||| ||||    
T  2828429 ttgatatttcgcataattgagggacaaagttggccgacccataaaaattcagggacgaagttgatgattcactctattt 2828507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 5484641 - 5484540
Alignment:
Q  32 tggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcac 131  Q
    ||||||||  ||||||||||| ||||  |||||||||||   ||||  |||| || |||||||||||| |||||||||| | || || ||||||||||||    
T  5484641 tggacgtcaaacaaattcagggactattttgatatttcgttaaatttggggacgaatttggccgacccctaaaaattcatggacgaaattgatggttcac 5484542  T
Q  132 tc 133  Q
    ||    
T  5484541 tc 5484540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 39083740 - 39083639
Alignment:
Q  32 tggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcac 131  Q
    ||||||||  ||||||||||| ||||  |||||||||||   |||| ||||| || |||||||||||| | |||||||| | || || ||||||||||||    
T  39083740 tggacgtcaaacaaattcagggactattttgatatttcgttaaatttagggacgaatttggccgacccctgaaaattcagggacgaaattgatggttcac 39083641  T
Q  132 tc 133  Q
    ||    
T  39083640 tc 39083639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 35997767 - 35997859
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactcg 134  Q
    ||||||||||| | ||  ||||||||||  |||||||||| | || |||||||||||||| |||||||| | || || |||||| ||||||||    
T  35997767 acaaattcagggattaaattgatatttcttataattgaggaacgaatttggccgacccgtgaaaattcagggacaaagttgatgattcactcg 35997859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 41809131 - 41809167
Alignment:
Q  171 aggctctgtttggataacttaaaactaacggaacgga 207  Q
    |||||||||||||||||||||||||||||||| ||||    
T  41809131 aggctctgtttggataacttaaaactaacggagcgga 41809167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 44556711 - 44556643
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattca 110  Q
    ||||||||| | ||||  |||||||||| |||||||||||||  | |||| ||||||||||||||||||    
T  44556711 acaaattcatggactaaattgatatttcacataattgagggactaatttgaccgacccgtaaaaattca 44556643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 39921595 - 39921494
Alignment:
Q  32 tggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcac 131  Q
    ||||||||  ||||||||||| ||||  |||||||||||   ||||  |||| || |||||||||||| | |||||||| | || || ||||||||||||    
T  39921595 tggacgtcaaacaaattcagggactattttgatatttcgttaaatttggggacgaatttggccgacccctgaaaattcagggacgaaattgatggttcac 39921496  T
Q  132 tc 133  Q
    ||    
T  39921495 tc 39921494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 42880778 - 42880879
Alignment:
Q  32 tggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcac 131  Q
    ||||||||  ||||||||||| ||||  |||||||||||   ||||  |||| || |||||||||||| | |||||||| | || || ||||||||||||    
T  42880778 tggacgtcaaacaaattcagggactattttgatatttcgttaaatttggggacgaatttggccgacccctgaaaattcagggacaaaattgatggttcac 42880877  T
Q  132 tc 133  Q
    ||    
T  42880878 tc 42880879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 372
Target Start/End: Complemental strand, 26829459 - 26829352
Alignment:
Q  264 tccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaat 363  Q
    |||| ||||||| |||||||||| |||  |||||||||||  | |||||||||||||||| |  ||||||  |||||  ||||| | || |||| |||||    
T  26829459 tccattgtttgggtattttatgatggagcggaacaaatttacctttccattgtttggaaaattaacggaatagaatgtgttatagc-ttcttataccaat 26829361  T
Q  364 tttaccctt 372  Q
    |||||||||    
T  26829360 tttaccctt 26829352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 39189483 - 39189383
Alignment:
Q  32 tggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcac 131  Q
    ||||||||  ||||||||||| ||||  |||||||||||   ||||  |||| || |||||||||||| | |||||||| | || || ||||||||||||    
T  39189483 tggacgtcaaacaaattcagggactattttgatatttcgttaaatttggggacgaatttggccgacccctgaaaattcagggacgaaattgatggttcac 39189384  T
Q  132 t 132  Q
    |    
T  39189383 t 39189383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 33113179 - 33113304
Alignment:
Q  8 cacttgacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaat 107  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33113179 cacttgacggagggacctttttgatggacgtctgacaaatttagggactaagttgatatttcgcataattgagggatgattttggccgacccgtaaaaat 33113278  T
Q  108 tcaagaactaatttgatggttcactc 133  Q
    ||||| ||||||||||||||||||||    
T  33113279 tcaaggactaatttgatggttcactc 33113304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 18430266 - 18430395
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||| |||||| ||||||| |    
T  18430266 gagcacttggacggagggacctttttattggacgtctgacatattcagggactaagttgatatttcgcataattgagggatgaatttggctgacccgtta 18430365  T
Q  104 aaattcaagaactaatttgatggttcactc 133  Q
    ||||||||| || |||||||||||||||||    
T  18430366 aaattcaaggacgaatttgatggttcactc 18430395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 45257215 - 45257344
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| |||||||||| |||||  |||||||||||||||||||||||||| ||||||||||  |||||||||||||||| |||||||||||||| |    
T  45257215 gagcacttggacggagggacattttttatggacgtctgacaaattcaggaactaagttgatattttacataattgagggatgaatttggccgacccgtga 45257314  T
Q  104 aaattcaagaactaatttgatggttcactc 133  Q
    |||||||||||| |||||||||||||||||    
T  45257315 aaattcaagaacgaatttgatggttcactc 45257344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 48634006 - 48633872
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||| |||| ||||||||||||||||||||| ||| || |||| ||||||||| |    
T  48634006 gagcacttggacggagggacctttttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgatggacgaatttgaccgacccgtga 48633907  T
Q  104 aaattcaagaactaatttgatggttcactcgattt 138  Q
    ||||||||| || ||||||||||||||||| ||||    
T  48633906 aaattcaaggacgaatttgatggttcactcaattt 48633872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 24382897 - 24383017
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||||||||||||||  |||||||||||||||| || | |||| ||||||||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  24382897 gacggagggacctttttgatggacgtctgacaaatccatggactaagttgatatttctcataattgaaggatgaatttggccgacccgtaaaaattcaag 24382996  T
Q  113 aactaatttgatggttcactc 133  Q
     || |||||||||||||||||    
T  24382997 gaccaatttgatggttcactc 24383017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 40508915 - 40509035
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    ||||||||||| |||||  ||||||||||||||||||| | | || ||||||||||||||||||||||||| || |||||||||||||| ||||||||||    
T  40508915 gacggagggacatttttgatggacgtctgacaaattcaaggattaagttgatatttcgcataattgagggacgaatttggccgacccgtgaaaattcaag 40509014  T
Q  113 aactaatttgatggttcactc 133  Q
     || |||||||||||||||||    
T  40509015 gacgaatttgatggttcactc 40509035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 23774268 - 23774152
Alignment:
Q  17 gagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaact 116  Q
    ||||||| |||||  ||||||||||||||||||||| ||||  |||||||||||||||||||||||| || |||||||||| ||| |||||||||| ||     
T  23774268 gagggacttttttgatggacgtctgacaaattcagggactaaattgatatttcgcataattgagggacgaatttggccgactcgtgaaaattcaaggacg 23774169  T
Q  117 aatttgatggttcactc 133  Q
    |||||||||||||||||    
T  23774168 aatttgatggttcactc 23774152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 31887447 - 31887576
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| ||||||||||||||||  | ||| ||||||||||||||| |||| ||||||||||||||||||||| || ||| |||| |||| |||| |    
T  31887447 gagcacttggacggagggacctttttgatagacatctgacaaattcagggactaagttgatatttcgcataattgatggttgaatttgaccgatccgtga 31887546  T
Q  104 aaattcaagaactaatttgatggttcactc 133  Q
    ||||||||| || |||||||||||||||||    
T  31887547 aaattcaaggacgaatttgatggttcactc 31887576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 39641844 - 39641963
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||||||||||||||  || |||||||||||||| | | |||| ||||||| || | ||||||||| ||||| |||||||||||||||||||||||||     
T  39641844 acggagggaccttttttatgaacgtctgacaaatttaaggactaagttgatactttgaataattgagagatgaatttggccgacccgtaaaaattcaagg 39641943  T
Q  114 actaatttgatggttcactc 133  Q
    || |||||||||||||||||    
T  39641944 acaaatttgatggttcactc 39641963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 134
Target Start/End: Original strand, 23888776 - 23888897
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||||||||||||||  ||||||| ||||||||||||| |||| | ||||||||||||||||||||||| ||  |||||||||  || |||||||| |    
T  23888776 gacggagggacctttttgatggacgtttgacaaattcagggactaagctgatatttcgcataattgagggacgaagttggccgacgtgtgaaaattcagg 23888875  T
Q  113 aactaatttgatggttcactcg 134  Q
     || ||||||||||||||||||    
T  23888876 gacgaatttgatggttcactcg 23888897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 277 - 377
Target Start/End: Original strand, 24373430 - 24373530
Alignment:
Q  277 tattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccctttatt 376  Q
    ||||||| ||||||||| ||| |||||| |||||||||||||||||||| || ||||| |||  ||||||||| |||||||| |||||||||||||||||    
T  24373430 tattttacgacggaatgaaactaatttcccattccattgtttggaaagtggatggaacagaacaaattataacttttttatttcaattttaccctttatt 24373529  T
Q  377 t 377  Q
    |    
T  24373530 t 24373530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 138
Target Start/End: Original strand, 41021008 - 41021132
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||||||||||||||  ||||||||||||||||||||| |  |  |||| |||||||||||||||||||  | |||||||||| ||| |||||||| |     
T  41021008 acggagggacctttttgatggacgtctgacaaattcagggatgaaattgaaatttcgcataattgagggactaatttggccgacgcgtgaaaattcaggg 41021107  T
Q  114 actaatttgatggttcactcgattt 138  Q
    || ||||||||||||||||| ||||    
T  41021108 acgaatttgatggttcactctattt 41021132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 373
Target Start/End: Original strand, 42028564 - 42028758
Alignment:
Q  171 aggctctgtttggataacttaaaactaacggaacggagcggaatggaacaaaataaaattgaacggaataacggagtggaaaaaatattccactccactg 270  Q
    |||||||||||||||||| ||||||||||||| |||| | ||||||| |  |||  |||     |||||   ||||||||| ||| ||| || |||| ||    
T  42028564 aggctctgtttggataacctaaaactaacggagcggaaccgaatggagcggaatggaat-----ggaat---ggagtggaacaaagatttcattccattg 42028655  T
Q  271 tttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccc 370  Q
    |||||||||| || | ||||||||||| |||||| || ||||||||||||||||| |||||||   ||| | ||||||| ||||||||||| ||||||||    
T  42028656 tttggatattatacggcggaatggaactaatttcccactccattgtttggaaagtggacggaatgaaattagttataacttttttattccatttttaccc 42028755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 33852665 - 33852792
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| || |||||||||||||  ||||||||||| |||||||| || ||  ||||||||||||||||||||||||| | |||| || ||||||||    
T  33852665 gagcacttggacagagggacctttttgatggacgtctgataaattcagaaattaaattgatatttcgcataattgagggataaatttgaccaacccgtaa 33852764  T
Q  104 aaattcaagaactaatttgatggttcac 131  Q
    ||||||||| || ||||| ||| |||||    
T  33852765 aaattcaaggacaaatttaatgattcac 33852792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 2977335 - 2977453
Alignment:
Q  15 cggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaa 114  Q
    |||| ||||||||||  ||||||| ||||||||| ||| |||   |||||||||||||||||| |||||||| |||||||||  |||||||||||||| |    
T  2977335 cggatggacctttttgatggacgtatgacaaatttagggactgaattgatatttcgcataattaagggatgaatttggccgattcgtaaaaattcaagga 2977434  T
Q  115 ctaatttgatggttcactc 133  Q
    | ||||||||| |||||||    
T  2977435 cgaatttgatgattcactc 2977453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 171 - 374
Target Start/End: Complemental strand, 44714210 - 44714005
Alignment:
Q  171 aggctctgtttggataacttaaaactaacggaacggagcggaatggaacaaaataaaattgaacggaat--aacggagtggaaaaaatattccactccac 268  Q
    ||||||||||||||||||||| || ||||||| ||||| ||||  ||||  |||  ||   || |||||  | |||| ||||| ||| ||| || || |     
T  44714210 aggctctgtttggataacttacaagtaacggagcggagtggaacagaacggaatggaacataatggaatggagcggaatggaataaagatttcattcaat 44714111  T
Q  269 tgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttac 368  Q
    ||||||||||||||| || |||||||||| |||||  ||||| ||||||||| || |  ||||||| |||||||||||||  ||||||||||||||||||    
T  44714110 tgtttggatattttacgatggaatggaactaatttttcattctattgtttggcaaatgaacggaacggaatgaattataatttttttattccaattttac 44714011  T
Q  369 ccttta 374  Q
    ||||||    
T  44714010 ccttta 44714005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 51454258 - 51454376
Alignment:
Q  17 gagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaact 116  Q
    ||||||| |||||  |||| || |||||||||||   ||||  |||||||||||||||||||||| |||| ||||||||| |||| |||||||||| ||     
T  51454258 gagggacattttttatggatgtttgacaaattcaaagactaatttgatatttcgcataattgaggaatgaatttggccgatccgtgaaaattcaaggacg 51454357  T
Q  117 aatttgatggttcactcga 135  Q
    |||||||||||||||||||    
T  51454358 aatttgatggttcactcga 51454376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 1847645 - 1847736
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  ||||||||| ||||||||||||||||| |||||||||||||| |||||||||| || ||||||||| |||||||    
T  1847645 acaaattcagggattaaattgatattttgcataattgagggatgaatttggccgacccgtgaaaattcaaggacaaatttgatgattcactc 1847736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 171 - 374
Target Start/End: Complemental strand, 25046260 - 25046055
Alignment:
Q  171 aggctctgtttggataacttaaaactaacggaacggagcggaatggaacaaaataaaattgaacggaat--aacggagtggaaaaaatattccactccac 268  Q
    |||||||||||||||||| | ||||||||||| |||| | ||||||| |  | |  || |||| |||||  ||||||| |||| |||  |||||  | |     
T  25046260 aggctctgtttggataacatgaaactaacggagcggaacagaatggagcggagtggaactgaatggaatggaacggagcggaacaaaggttccatcctat 25046161  T
Q  269 tgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttac 368  Q
    |||||||||||||||  ||||||| |||| |||||  || |||||||||| ||||||  | ||||| |||||| ||||||| ||||||||||| ||||||    
T  25046160 tgtttggatattttactacggaattgaactaattttccactccattgtttagaaagtgaatggaacggaatgatttataacttttttattccatttttac 25046061  T
Q  369 ccttta 374  Q
    ||||||    
T  25046060 ccttta 25046055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 45898352 - 45898472
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||||||||||||||  | ||||||||||||||||| | |||| ||||||||||||||||||| |||||  |  |||| ||||  || |||||||| |    
T  45898352 gacggagggacctttttgatagacgtctgacaaattcaaggactaagttgatatttcgcataattcagggacaaagttggtcgacgtgtgaaaattcagg 45898451  T
Q  113 aactaatttgatggttcactc 133  Q
     || |||||||||||||||||    
T  45898452 gacgaatttgatggttcactc 45898472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 374
Target Start/End: Original strand, 39439278 - 39439405
Alignment:
Q  247 tggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattat 346  Q
    ||||| ||| ||| || |||| ||||||||||||| | ||||||||| ||| |||||| || ||||||||||| |||||  ||||||| |||    ||||    
T  39439278 tggaataaaaatttcattccattgtttggatatttcaagacggaatgaaactaatttcccactccattgtttgaaaagtgaacggaacggaacatgttat 39439377  T
Q  347 aacatttttattccaattttacccttta 374  Q
    ||| ||||||||||||||||||||||||    
T  39439378 aacttttttattccaattttacccttta 39439405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 45897141 - 45897050
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  |||||||||||||||||||||||| ||  |||||||||||||||||||||||| || || |||||| |||||||    
T  45897141 acaaattcagggattaaattgatatttcgcataattgagggacgaagttggccgacccgtaaaaattcaaggacgaagttgatgattcactc 45897050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 259 - 372
Target Start/End: Original strand, 2144552 - 2144664
Alignment:
Q  259 tccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttatt 358  Q
    |||| |||||||||||| |||||||||| |||  ||||   ||||  |||||||||||||||||||| |||||||  |||| ||||||||| ||||||||    
T  2144552 tccattccactgtttgggtattttatgatggagcggaatgcattttccattccattgtttggaaagttgacggaatggaataaattataac-tttttatt 2144650  T
Q  359 ccaattttaccctt 372  Q
    ||| ||||||||||    
T  2144651 ccatttttaccctt 2144664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 374
Target Start/End: Complemental strand, 32279146 - 32279041
Alignment:
Q  269 tgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttac 368  Q
    |||||||||||||||  ||||||| |||| |||||  || |||||||||||||||||  | ||||| |||||| ||||||| |||| |||||| ||||||    
T  32279146 tgtttggatattttactacggaattgaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataactttttcattccatttttac 32279047  T
Q  369 ccttta 374  Q
    ||||||    
T  32279046 ccttta 32279041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 24381817 - 24381765
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  24381817 ttgatatttcgcataattgagggatgaatttggccgatccgtaaaaattcaag 24381765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 2975551 - 2975460
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  |||||||||||||| |||||||||||| ||| || || ||||||||||||||| || |||||| || |||||||    
T  2975551 acaaattcagggattaaattgatatttcgcatcattgagggatgaatttagctgatccgtaaaaattcaaggacgaatttggtgattcactc 2975460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 23887289 - 23887198
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  |||||||||||||||||||||||| ||  || |||||||| |||||||||||| || || |||||| |||||||    
T  23887289 acaaattcagggattaaattgatatttcgcataattgagggacgaagttagccgacccataaaaattcaaggacgaagttgatgattcactc 23887198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 33111932 - 33111841
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  ||||||||||||||||||||||||||| |||| |||| |||| |||||||| | || || |||||| |||||||    
T  33111932 acaaattcagggattaaattgatatttcgcataattgagggatgaatttgaccgagccgtgaaaattcagggacgaagttgatgattcactc 33111841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 306 - 372
Target Start/End: Original strand, 35231285 - 35231351
Alignment:
Q  306 cattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccctt 372  Q
    |||||||||||||||||| | |||||||  |||||| ||||||  ||||||||||||||||||||||    
T  35231285 cattccattgtttggaaaattgacggaatggaatgagttataatttttttattccaattttaccctt 35231351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 31885608 - 31885539
Alignment:
Q  43 caaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||||| | ||||  |||||||||||||||||| |||||||| |||| ||||||||||||||| ||||    
T  31885608 caaattcaagtactaaattgatatttcgcataattaagggatgaatttgaccgacccgtaaaaatccaag 31885539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 137
Target Start/End: Original strand, 48635373 - 48635468
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactcgatt 137  Q
    ||||||||||| | ||  |||||||||||||||||| ||||| || |||| |||| |||| |||||||| | || || |||||| |||||||||||    
T  48635373 acaaattcagggattaaattgatatttcgcataattaagggacgaatttgaccgatccgtgaaaattcagggacgaaattgatgattcactcgatt 48635468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 18428822 - 18428772
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattca 110  Q
    |||||||||||||||||||||||| ||  ||| ||||||||||||||||||    
T  18428822 ttgatatttcgcataattgagggacgaagttgaccgacccgtaaaaattca 18428772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 33851055 - 33850982
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| |||||||||||| ||  ||| ||||||||| |||||||| |||| || |||||| |||||||    
T  33851055 ttgatatttcggataattgagggacgaagttgaccgacccgtgaaaattcaggaacgaaattgatgattcactc 33850982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 25909587 - 25909519
Alignment:
Q  255 atattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaa 323  Q
    ||||| || ||||||||||||||||||||||| |||| |||| ||| ||| |||| |||| ||||||||    
T  25909587 atatttcattccactgtttggatattttatgatggaacggaataaacttctcatttcattatttggaaa 25909519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 27011934 - 27011867
Alignment:
Q  309 tccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccctttattt 377  Q
    ||||||||||||||||| |||| ||  ||||| |||||||  ||||||||||||||||| |||||||||    
T  27011934 tccattgtttggaaagttgacgaaatggaatgtattataat-tttttattccaattttaacctttattt 27011867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 40508584 - 40508492
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactcg 134  Q
    ||||||||||| | ||  |||| ||||||||||||| ||||| || |||| ||||||||| |||||||| | || || |||||| ||||||||    
T  40508584 acaaattcagggattaaattgagatttcgcataattaagggacgaatttgtccgacccgtgaaaattcagggacgaagttgatgattcactcg 40508492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 40998583 - 40998515
Alignment:
Q  65 atttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||||||||||||  | |||| ||||| ||| |||||||| | ||||| ||||||||||||||    
T  40998583 atttcgcataattgagggactaatttgaccgacgcgtgaaaattcagggactaacttgatggttcactc 40998515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 53190783 - 53190866
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccga 96  Q
    |||||||||||| ||||  ||||||||||  ||||||||| ||||  | ||||||||||| |||| ||||| || |||||||||    
T  53190783 gacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttggccga 53190866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 1845913 - 1845839
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattg 78  Q
    ||||||||| |||||||||| |||||  |||||||||| ||||||||   |||| |||||||||| |||||||||    
T  1845913 gagcacttggacggagggacgtttttgatggacgtctgtcaaattcaaagactaagttgatattttgcataattg 1845839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 32279251 - 32279205
Alignment:
Q  171 aggctctgtttggataacttaaaactaacggaacggagcggaatgga 217  Q
    |||||||||||||||||| | ||||||||||| |||| |||||||||    
T  32279251 aggctctgtttggataacatgaaactaacggagcggaacggaatgga 32279205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 373
Target Start/End: Original strand, 40022935 - 40023036
Alignment:
Q  272 ttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccct 371  Q
    |||||||||||| ||  ||| ||||| |||||  ||||||| | |||  ||||| ||||||||  ||||| ||||||  ||||||||| |||||||||||    
T  40022935 ttggatattttacgatagaacggaactaatttttcattccactatttaaaaagtggacggaacataatgagttataatttttttattctaattttaccct 40023034  T
Q  372 tt 373  Q
    ||    
T  40023035 tt 40023036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 3152261 - 3152325
Alignment:
Q  32 tggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccga 96  Q
    ||||||||||  ||||||||| ||||  ||||||||||||| |||| ||||||||  ||||||||    
T  3152261 tggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggatgaaattggccga 3152325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 27012064 - 27012016
Alignment:
Q  171 aggctctgtttggataacttaaaactaacggaacggagcggaatggaac 219  Q
    ||||||| ||| |||||||||||||||||||| ||||  ||||||||||    
T  27012064 aggctctatttagataacttaaaactaacggagcggaaaggaatggaac 27012016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 5e-48; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 42134611 - 42134482
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42134611 gagcacttggacggagggacctttttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgagggatgattttggccgacccgtaa 42134512  T
Q  104 aaattcaagaactaatttgatggttcactc 133  Q
    ||||||||| || |||||||||||||||||    
T  42134511 aaattcaaggacgaatttgatggttcactc 42134482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 18183939 - 18184068
Alignment:
Q  5 gagcacttgacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaa 104  Q
    |||||||||| | |||||| |||||  ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  18183939 gagcacttgatgaagggacatttttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgagggatgattttggccgaaccgtaaa 18184038  T
Q  105 aattcaagaactaatttgatggttcactcg 134  Q
    |||||||  || ||||||||||||||||||    
T  18184039 aattcaaagacgaatttgatggttcactcg 18184068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 46638802 - 46638936
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||  ||||||||| ||| |    
T  46638802 gagcacttggacggagggacctttttggtggacgtctgacaaattcaaggactaagttgatatttcgcataattgagggatgaagttggccgacgcgtga 46638901  T
Q  104 aaattcaagaactaatttgatggttcactcgattt 138  Q
    ||||||| |||| ||||||||||||||||| ||||    
T  46638902 aaattcaggaacgaatttgatggttcactcaattt 46638936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 172 - 373
Target Start/End: Complemental strand, 15582447 - 15582249
Alignment:
Q  172 ggctctgtttggataacttaaaactaacggaacggagcggaatggaacaaaataaaattgaacggaataacggagtggaaaaaatattccactccactgt 271  Q
    ||||||||||||| ||||||||||||||||| |||| ||||| ||||   ||   ||  ||| |||||   |||  |||| ||| |||||| |||| |||    
T  15582447 ggctctgtttggaaaacttaaaactaacggagcggaacggaacggaatggaacggaagggaatggaat---ggaacggaataaaaattccattccattgt 15582351  T
Q  272 ttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccct 371  Q
    ||||||| ||||||| |||||||||| |||||  |||||||||||||||||||| |||||||| ||| || |||||| | ||||||||||||||||||||    
T  15582350 ttggatactttatgatggaatggaactaattttccattccattgtttggaaagttgacggaacagaaagagttataaaaattttattccaattttaccct 15582251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 44157562 - 44157433
Alignment:
Q  5 gagcactt-gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    |||||||| |||||| |||| |||||  ||||||||| ||||||||||| |||| |||||||||| ||||||||||||||||| |||||||||||||| |    
T  44157562 gagcacttagacggaaggactttttttatggacgtctaacaaattcagggactaagttgatattttgcataattgagggatgaatttggccgacccgtga 44157463  T
Q  104 aaattcaagaactaatttgatggttcactc 133  Q
    ||||| ||| || | |||||||||||||||    
T  44157462 aaatttaaggacgagtttgatggttcactc 44157433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 35479969 - 35480099
Alignment:
Q  4 agagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgta 102  Q
    |||||||||| ||||| ||||||||||  |||||||||||||||||||   | || |||||||||||||||||||||||||||| |||||| || ||||     
T  35479969 agagcacttggacggaaggacctttttgatggacgtctgacaaattcatagattaagttgatatttcgcataattgagggatgaatttggctgatccgtg 35480068  T
Q  103 aaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||| || || ||||||||||||||    
T  35480069 aaaattcaaggacgaagttgatggttcactc 35480099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 36895505 - 36895634
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| ||| ||||||||||||  ||||||||||||||||||||| |||| ||||||||||||||||||||| ||| ||  ||| ||||| ||| |    
T  36895505 gagcacttggacgaagggacctttttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgatggacgaagttgaccgacgcgtga 36895604  T
Q  104 aaattcaagaactaatttgatggttcactc 133  Q
    ||||||| | || |||||||||||||||||    
T  36895605 aaattcagggacaaatttgatggttcactc 36895634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 45380979 - 45381083
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| ||||||| ||||||||  ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||| ||  |||||||    
T  45380979 gagcacttggacggaggaacctttttgatggacgtctgacaaattcatgaactaagttgatatttcgcataattgagggatgaatttgaccttcccgtaa 45381078  T
Q  104 aaatt 108  Q
    |||||    
T  45381079 aaatt 45381083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 264 - 374
Target Start/End: Complemental strand, 34970907 - 34970797
Alignment:
Q  264 tccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaat 363  Q
    |||| ||||||||||||||||||||||||||||| |||||| || ||||||||||||||||| |||||||| | | |  ||||| | ||||||||||| |    
T  34970907 tccattgtttggatattttatgacggaatggaactaatttcccactccattgtttggaaagtggacggaacgggaagtgttataccctttttattccatt 34970808  T
Q  364 tttacccttta 374  Q
    |||||||||||    
T  34970807 tttacccttta 34970797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 248 - 377
Target Start/End: Complemental strand, 41404943 - 41404814
Alignment:
Q  248 ggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattata 347  Q
    |||| ||| |||||| ||||||||||||||| |||| ||||||||  |   |||||| |||||||||||||||||| || ||||||| |||||| |||||    
T  41404943 ggaataaagattccattccactgtttggatactttacgacggaatctagttaatttcccattccattgtttggaaaatcaacggaacggaatgagttata 41404844  T
Q  348 acatttttattccaattttaccctttattt 377  Q
    |   ||||||||||||||||||||||||||    
T  41404843 aatattttattccaattttaccctttattt 41404814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 33685299 - 33685372
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||| | || |||||||||||||||||    
T  33685299 ttgatatttcgcataattgagggatgaatttgaccgacccgtaaaaattcagggacgaatttgatggttcactc 33685372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 27940727 - 27940607
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||||||||||||||  ||||||||||| ||||||| | | ||  |||||||||||||||||||||||| || |||| || ||| || |||||||| |     
T  27940727 acggagggacctttttgatggacgtctgataaattcaaggattaaattgatatttcgcataattgagggacgaatttgaccaacctgtgaaaattcaggg 27940628  T
Q  114 actaatttgatggttcactcg 134  Q
    ||||| |||||||||||||||    
T  27940627 actaaattgatggttcactcg 27940607  T

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Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 14 - 133
Target Start/End: Original strand, 47269461 - 47269580
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||||||||||||||  ||||||| ||||||||||||| |  |  |||| |||||| ||||||||||||  | |||||||||| ||| |||||||| |     
T  47269461 acggagggacctttttgatggacgtttgacaaattcagggatgaaattgaaatttcgtataattgagggactaatttggccgacgcgtgaaaattcaggg 47269560  T
Q  114 actaatttgatggttcactc 133  Q
    || |||||||||||||||||    
T  47269561 acgaatttgatggttcactc 47269580  T

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Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 374
Target Start/End: Complemental strand, 48047110 - 48046983
Alignment:
Q  247 tggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattat 346  Q
    ||||| ||| ||| || |||| |||||||| |||||| ||| ||||||||| |||||| || |||||||||||||||||  | ||||| |||    ||||    
T  48047110 tggaataaaaatttcattccattgtttggaaattttaagacagaatggaactaatttcccactccattgtttggaaagtgaatggaacggaacatgttat 48047011  T
Q  347 aacatttttattccaattttacccttta 374  Q
    ||| ||||||||||||||||||||||||    
T  48047010 aacttttttattccaattttacccttta 48046983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 264 - 373
Target Start/End: Complemental strand, 7521816 - 7521707
Alignment:
Q  264 tccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaat 363  Q
    |||| |||||| ||||||||||| |||||||| | |||||  ||||| |||||||| ||||||||  ||| ||||||| ||||||| | |||||| ||||    
T  7521816 tccattgtttgaatattttatgatggaatggagctaattttccattctattgtttgaaaagtcgagagaattgaatgagttataacttatttatttcaat 7521717  T
Q  364 tttacccttt 373  Q
    ||||||||||    
T  7521716 tttacccttt 7521707  T

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Target: chr1; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 247 - 372
Target Start/End: Complemental strand, 32573816 - 32573691
Alignment:
Q  247 tggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattat 346  Q
    ||||| ||| |||||| |||| |||||||||| ||||||| ||||  |||| | |||  |||||||||||||| |||||  || |||| ||| || ||||    
T  32573816 tggaataaagattccattccattgtttggatactttatgatggaacagaactagttttccattccattgtttgaaaagttaacagaacggaacgagttat 32573717  T
Q  347 aacatttttattccaattttaccctt 372  Q
    ||| ||||||||||||||||||||||    
T  32573716 aacttttttattccaattttaccctt 32573691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 31801762 - 31801683
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgaggga 83  Q
    ||||||||| ||||||||||||||||  ||||||||| ||||||| | | |||| |||||||||||||||||||||||||    
T  31801762 gagcacttggacggagggacctttttgatggacgtctcacaaatttaaggactaagttgatatttcgcataattgaggga 31801683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 33679332 - 33679258
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactcg 134  Q
    |||||||||||||||||||||||| || |||||| |||||||||||||||| | || || |||||| ||||||||    
T  33679332 ttgatatttcgcataattgagggacgaatttggctgacccgtaaaaattcatggacaaaattgatgattcactcg 33679258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 372
Target Start/End: Original strand, 29465473 - 29465585
Alignment:
Q  259 tccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttatt 358  Q
    |||| |||||||||||| |||||||||| |||  ||||   ||||  |||||||||||||||||||| |||| ||  |||| ||||||||| ||||||||    
T  29465473 tccattccactgtttgggtattttatgatggagcggaatgcattttccattccattgtttggaaagttgacgaaatggaataaattataac-tttttatt 29465571  T
Q  359 ccaattttaccctt 372  Q
    ||| ||||||||||    
T  29465572 ccatttttaccctt 29465585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 372
Target Start/End: Original strand, 35306222 - 35306335
Alignment:
Q  259 tccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttatt 358  Q
    ||||||||  ||||||| ||| |||||| |||  |||| | | ||| |||||||||||||||||| | |||||||  |||||| ||||||  ||||||||    
T  35306222 tccactcctttgtttgggtatattatgatggagcggaatagaattctcattccattgtttggaaaattgacggaatggaatgagttataatttttttatt 35306321  T
Q  359 ccaattttaccctt 372  Q
    ||||||||||||||    
T  35306322 ccaattttaccctt 35306335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 18180591 - 18180523
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattca 110  Q
    ||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||  ||| ||||||||    
T  18180591 acaaattcaggaattaaattgatatttcgcataattgagggatgaatttggccgagtcgtgaaaattca 18180523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 27952500 - 27952583
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatg 125  Q
    ||||||||||| | ||  |||||||||||||||||||||||| || |||||||||||||| | |||||| | ||||| ||||||    
T  27952500 acaaattcagggattaaattgatatttcgcataattgagggacgaatttggccgacccgtgataattcagggactaagttgatg 27952583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 5783465 - 5783363
Alignment:
Q  32 tggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcac 131  Q
    ||||||||  ||||||||||| ||||  |||||||||||   ||||| | ||||| |||||||||||| |||||||||| | || || ||||||||||||    
T  5783465 tggacgtcaaacaaattcagggactattttgatatttcgttaaattgggagatgaatttggccgacccctaaaaattcagggacgaaattgatggttcac 5783366  T
Q  132 tcg 134  Q
    |||    
T  5783365 tcg 5783363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 11152618 - 11152545
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||||||||||||||||| ||  ||||||||||||| |||||||| | || || |||||| |||||||    
T  11152618 ttgatatttcgcataattgagggacgaaattggccgacccgtgaaaattcagggacgaagttgatgattcactc 11152545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 5784867 - 5784959
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactcg 134  Q
    ||||||||||| | ||  |||||||||||||||||||||||| ||  ||| ||||||||| |||||||| | || || |||||| ||||||||    
T  5784867 acaaattcagggattaaattgatatttcgcataattgagggacgaagttgaccgacccgtgaaaattcagggacgaagttgatgattcactcg 5784959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 42366751 - 42366703
Alignment:
Q  171 aggctctgtttggataacttaaaactaacggaacggagcggaatggaac 219  Q
    |||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  42366751 aggctctgtttggataacttaaaactaacggagcggaaaggaatggaac 42366703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 372
Target Start/End: Original strand, 2664245 - 2664359
Alignment:
Q  257 attccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacattttta 356  Q
    |||||| |||| |||||||||  ||||||| ||||| ||||||||||| ||  ||||| |||||||||| |||||||   ||||| ||||||   |||||    
T  2664245 attccattccattgtttggatgctttatgatggaattgaacaaatttctcaaaccattatttggaaagtagacggaatgaaatgagttataa-tctttta 2664343  T
Q  357 ttccaattttaccctt 372  Q
    ||||| ||||||||||    
T  2664344 ttccatttttaccctt 2664359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 31803700 - 31803791
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  |||||||||||||||||||| ||| ||  ||||||||||||| |||||||| | || || |||||| |||||||    
T  31803700 acaaattcagggattaaattgatatttcgcataattgaaggacgaagttggccgacccgtgaaaattcagggacgaagttgatgattcactc 31803791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 45379158 - 45379085
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||||||||||| ||||| ||  ||||||||||||| |||||||| | || || |||||| |||||||    
T  45379158 ttgatatttcgcataattaagggacgaagttggccgacccgtgaaaattcagggacgaagttgatgattcactc 45379085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 47264197 - 47264124
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||| |||||||||||||||||||  |  ||||||||| ||| |||||||| | ||||| ||||||||||||||    
T  47264197 ttgaaatttcgcataattgagggactaaattggccgacgcgtgaaaattcagggactaacttgatggttcactc 47264124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 242 - 355
Target Start/End: Complemental strand, 49765679 - 49765566
Alignment:
Q  242 cggagtggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatga 341  Q
    |||| ||||||||| | | || |||| |||||| |||||||| || |||||| ||| |||||| || ||||||||||| ||||| |||||||| ||| |     
T  49765679 cggaatggaaaaaaaaattcattccattgtttgaatattttacgatggaatgaaactaatttcccactccattgtttgaaaagtggacggaacggaaagt 49765580  T
Q  342 attataacattttt 355  Q
     ||||||| |||||    
T  49765579 gttataactttttt 49765566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 348
Target Start/End: Complemental strand, 8099804 - 8099696
Alignment:
Q  240 aacggagtggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaat 339  Q
    |||||||||||| ||| ||| || |||| ||||||||||||  |  |||||||| ||| |||||| || |||||||||| |||| | ||||||||  |||    
T  8099804 aacggagtggaacaaagatttcattccattgtttggatattaaacaacggaatgaaactaatttcccactccattgtttagaaaatagacggaacaaaat 8099705  T
Q  340 gaattataa 348  Q
    || ||||||    
T  8099704 gagttataa 8099696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 487
Target Start/End: Original strand, 45848724 - 45848815
Alignment:
Q  399 aattcttaactcaattcaatcaatgt--ggttattttggcgt-gttcatgagtagcaccaatataaatggttctttgaaacgagtaccttcg 487  Q
    |||||| ||||| ||||||||||| |  |||||||||||| | |||||||||||||||||| |||  ||||||||| ||| |||||| ||||    
T  45848724 aattctcaactcgattcaatcaatatatggttattttggcattgttcatgagtagcaccaacatatgtggttcttttaaatgagtacattcg 45848815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 4855970 - 4856053
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccga 96  Q
    |||||||||||| ||||  ||||||||||  ||||||||| ||||  ||||||||||||| |||| ||||| |  |||||||||    
T  4855970 gacggagggaccattttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcagggacgtatttggccga 4856053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 41405006 - 41404959
Alignment:
Q  172 ggctctgtttggataacttaaaactaacggaacggagcggaatggaac 219  Q
    ||||||||||||||||||||||||||||||| ||||  |||| |||||    
T  41405006 ggctctgtttggataacttaaaactaacggagcggaatggaacggaac 41404959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 482
Target Start/End: Complemental strand, 41419051 - 41418965
Alignment:
Q  399 aattcttaactcaattcaatcaat--gtggttattttggcgt-gttcatgagtagcaccaatataaatggttctttgaaacgagtac 482  Q
    |||||| |||||||||||||||||  |||| ||||||||| | ||||| |||||||||||| |||  || |||||| ||||||||||    
T  41419051 aattctcaactcaattcaatcaatatgtggatattttggcatcgttcacgagtagcaccaacatatgtgattctttcaaacgagtac 41418965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 35478160 - 35478110
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattca 110  Q
    ||||||||| ||||||||||||||  | |||||||||||||| ||||||||    
T  35478160 ttgatattttgcataattgagggactaatttggccgacccgtgaaaattca 35478110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 311 - 377
Target Start/End: Complemental strand, 40641504 - 40641438
Alignment:
Q  311 cattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccctttattt 377  Q
    ||||||||||||||| || ||| | |||  ||||||||| ||||||||||| |||||||||| ||||    
T  40641504 cattgtttggaaagtggatggagcggaacaaattataacttttttattccatttttacccttaattt 40641438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 50677404 - 50677437
Alignment:
Q  174 ctctgtttggataacttaaaactaacggaacgga 207  Q
    ||||||||||||||||||||||||||||| ||||    
T  50677404 ctctgtttggataacttaaaactaacggagcgga 50677437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 42366631 - 42366564
Alignment:
Q  309 tccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccctttattt 377  Q
    ||||||||||||||||| ||| |||  ||||| ||||||   ||||||||||||||||| |||||||||    
T  42366631 tccattgtttggaaagttgacagaatggaatgtattatatt-tttttattccaattttaacctttattt 42366564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 46636856 - 46636788
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattca 110  Q
    |||||||||| || ||  |||||||||||||||||||| ||| ||  || |||||||||| ||||||||    
T  46636856 acaaattcagaaattaaattgatatttcgcataattgaaggacgaagttagccgacccgtgaaaattca 46636788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 304
Target Start/End: Original strand, 50138454 - 50138494
Alignment:
Q  264 tccactgtttggatattttatgacggaatggaacaaatttc 304  Q
    |||||||||||||||||| | ||||||||||||| ||||||    
T  50138454 tccactgtttggatatttaacgacggaatggaactaatttc 50138494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 51195155 - 51195091
Alignment:
Q  306 cattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccc 370  Q
    |||||||||| || ||||||  ||||||| |||  ||||||||| ||||||||||| ||||||||    
T  51195155 cattccattgctttgaaagtgaacggaacagaacaaattataacttttttattccatttttaccc 51195091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 43318054 - 43318186
Alignment:
Q  4 agagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgta 102  Q
    |||||||||| ||||||||||||||||  ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  43318054 agagcacttggacggagggaccttttttatggacgtctgacaaattcagggactaagttgatatttcgcataattgagggatgattttggccgacccata 43318153  T
Q  103 aaaattcaagaactaatttgatggttcactcga 135  Q
    |||||||||| || |||||||||||||||||||    
T  43318154 aaaattcaaggacgaatttgatggttcactcga 43318186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 35292386 - 35292505
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||||| ||||||||  ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||||||    
T  35292386 gacggaggaaccttttttatggacgtctgacaaattcagggactaagttgatatttcgcataattgaaggatgattttggcc-acccataaaaattcaag 35292484  T
Q  113 aactaatttgatggttcactc 133  Q
     || |||||||||||||||||    
T  35292485 gacgaatttgatggttcactc 35292505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 38596980 - 38596868
Alignment:
Q  21 gacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatt 120  Q
    |||||||||  ||||||||| ||||||||||| |||| ||||||||||||||||||||||||| || |||||||||||| |||||||||||| || ||||    
T  38596980 gacctttttgatggacgtctaacaaattcagggactaagttgatatttcgcataattgagggacgaatttggccgacccataaaaattcaaggacgaatt 38596881  T
Q  121 tgatggttcactc 133  Q
    |||||||||||||    
T  38596880 tgatggttcactc 38596868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 18728596 - 18728726
Alignment:
Q  4 agagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgta 102  Q
    |||||||||| ||||||||||||||||  ||||||||||||||||||||| |||| ||||||||||||||||||| ||||| ||  |||||||||  ||     
T  18728596 agagcacttggacggagggacctttttgatggacgtctgacaaattcagggactaagttgatatttcgcataattaagggacgaagttggccgacaagtg 18728695  T
Q  103 aaaattcaagaactaatttgatggttcactc 133  Q
    |||||||| | || |||||||||||||||||    
T  18728696 aaaattcagggacgaatttgatggttcactc 18728726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 38178097 - 38178217
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||| ||||||||||||  ||||||||||||||||||||  ||||  ||||||||||||||||||||||||||| |||| ||||||||| |||||| |||    
T  38178097 gacgaagggacctttttgatggacgtctgacaaattcagatactaaattgatatttcgcataattgagggatgaatttgaccgacccgtgaaaatttaag 38178196  T
Q  113 aactaatttgatggttcactc 133  Q
     || |||||||| ||||||||    
T  38178197 gacgaatttgatagttcactc 38178217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 38205321 - 38205441
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||| ||||||||||||  ||||||||||||||||||||  ||||  ||||||||||||||||||||||||||| |||| ||||||||| |||||| |||    
T  38205321 gacgaagggacctttttgatggacgtctgacaaattcagatactaaattgatatttcgcataattgagggatgaatttgaccgacccgtgaaaatttaag 38205420  T
Q  113 aactaatttgatggttcactc 133  Q
     || |||||||| ||||||||    
T  38205421 gacgaatttgatagttcactc 38205441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 35395463 - 35395333
Alignment:
Q  4 agagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgta 102  Q
    |||||||||| ||||||||||||||||  ||||||||| ||||||||||||||||  |||||||||||||||||||||||| ||  |||||||||  ||     
T  35395463 agagcacttggacggagggacctttttgatggacgtctaacaaattcaggaactaaattgatatttcgcataattgagggacgaagttggccgacgtgtg 35395364  T
Q  103 aaaattcaagaactaatttgatggttcactc 133  Q
    |||||||| | |  |||||||||||||||||    
T  35395363 aaaattcagggatgaatttgatggttcactc 35395333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 171 - 373
Target Start/End: Complemental strand, 4944619 - 4944426
Alignment:
Q  171 aggctctgtttggataacttaaaactaacggaacggagcggaatggaacaaaataaaattgaacggaataacggagtggaaaaaatattccactccactg 270  Q
    |||||||||||||||||| ||||||||||||| |||| |||||| || |  ||| |||| |        |||||||||||| ||| |||||| |||| ||    
T  4944619 aggctctgtttggataacctaaaactaacggagcggaacggaat-gagcggaatgaaatgg--------aacggagtggaacaaagattccattccattg 4944529  T
Q  271 tttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccc 370  Q
    |||||||||| || |||| |||||||| ||||||| | ||||||||||||||||| |||||||  |||| |  |||||| ||||||||||| ||||||||    
T  4944528 tttggatattatacgacgaaatggaactaatttcatactccattgtttggaaagtggacggaatggaattagatataacttttttattccatttttaccc 4944429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 33256520 - 33256400
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    ||||||||||| |||||  |||||||||||||||||||   | || ||||||||||||||||||||| ||||||  |||||||||  ||||||||||| |    
T  33256520 gacggagggacttttttgatggacgtctgacaaattcaaagattaagttgatatttcgcataattgaaggatgaagttggccgacgtgtaaaaattcagg 33256421  T
Q  113 aactaatttgatggttcactc 133  Q
     || |||||||||||||||||    
T  33256420 gacgaatttgatggttcactc 33256400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 133
Target Start/End: Complemental strand, 32087644 - 32087514
Alignment:
Q  4 agagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgta 102  Q
    |||||||||| ||||||||||||||||  ||||||||||| ||||| ||| |||| ||||||||||||||||||| ||||| ||  |||  |||| |||     
T  32087644 agagcacttggacggagggacctttttgatggacgtctgaaaaattaagggactaagttgatatttcgcataattaagggacgaagttgatcgacgcgtg 32087545  T
Q  103 aaaattcaagaactaatttgatggttcactc 133  Q
    |||||||| | || |||||||||||||||||    
T  32087544 aaaattcagggacgaatttgatggttcactc 32087514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 275 - 377
Target Start/End: Original strand, 7505334 - 7505436
Alignment:
Q  275 gatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttacccttta 374  Q
    |||| ||||||| |||||||| | |||||  |||||||||||||| ||||| |||||||| |||||| ||||| | ||||||||||||||||||| ||||    
T  7505334 gatactttatgatggaatggagctaattttccattccattgtttgaaaagttgacggaacggaatgagttatatcttttttattccaattttacctttta 7505433  T
Q  375 ttt 377  Q
    |||    
T  7505434 ttt 7505436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 374
Target Start/End: Complemental strand, 11617953 - 11617827
Alignment:
Q  247 tggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattat 346  Q
    ||||| ||| |||||| |||| |||||| |||||| | ||||||||| ||| |||||| || |||||||||||||||||  ||||||| |||    ||||    
T  11617953 tggaataaaaattccattccattgtttgaatatttcaagacggaatgaaactaatttcccactccattgtttggaaagtgaacggaacggaacatgttat 11617854  T
Q  347 aacatttttattccaattttacccttta 374  Q
    ||| ||||||||||||||||||||||||    
T  11617853 aac-tttttattccaattttacccttta 11617827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 32089925 - 32090024
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactcgatttgaa 141  Q
    ||||||||||| | ||  |||||||||||||||||||||||| ||  |||||||||||||||||||||| | || || |||||| ||||||| |||||||    
T  32089925 acaaattcagggattaaattgatatttcgcataattgagggacgaagttggccgacccgtaaaaattcagggacgaagttgatgattcactcaatttgaa 32090024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 40330515 - 40330606
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  |||||||||||||||||||||||| ||||||||||||||||| |||||||| | || || |||||| |||||||    
T  40330515 acaaattcagggattaaattgatatttcgcataattgagggacgattttggccgacccgtgaaaattcagggacgaagttgatgattcactc 40330606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 21521565 - 21521456
Alignment:
Q  240 aacggagtggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaat 339  Q
    |||||| ||||| ||||||| || |||| |||||||||||| || || ||||||||||||||| |  ||||||||||||| |||||  ||||||  ||||    
T  21521565 aacggaatggaataaatatttcattccattgtttggatattatacgatggaatggaacaaattacttattccattgtttgaaaagtgaacggaatggaat 21521466  T
Q  340 gaattataac 349  Q
    ||||||||||    
T  21521465 gaattataac 21521456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 349
Target Start/End: Complemental strand, 21532131 - 21532022
Alignment:
Q  240 aacggagtggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaat 339  Q
    |||||| ||||| ||||||| || |||| |||||||||||| || || ||||||||||||||| |  ||||||||||||| |||||  ||||||  ||||    
T  21532131 aacggaatggaataaatatttcattccattgtttggatattatacgatggaatggaacaaattacttattccattgtttgaaaagtgaacggaatggaat 21532032  T
Q  340 gaattataac 349  Q
    ||||||||||    
T  21532031 gaattataac 21532022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 269 - 374
Target Start/End: Complemental strand, 30085688 - 30085583
Alignment:
Q  269 tgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttac 368  Q
    |||||||||||||||  ||||||| |||| |||||  || |||||||||||||||||  | ||||| |||||| ||||||| |||||||| || ||||||    
T  30085688 tgtttggatattttactacggaattgaactaattttccactccattgtttggaaagtgaatggaacggaatgatttataacttttttatttcatttttac 30085589  T
Q  369 ccttta 374  Q
    ||||||    
T  30085588 ccttta 30085583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 348
Target Start/End: Complemental strand, 41484371 - 41484266
Alignment:
Q  243 ggagtggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaa 342  Q
    |||| |||| || ||||||| | || ||||||||||||||| || |||| ||||||||||   ||||||||||||| ||||||  ||||||| |||||||    
T  41484371 ggagcggaacaattattccatttcattgtttggatattttacgatggaacggaacaaattattcattccattgtttagaaagtgaacggaacggaatgaa 41484272  T
Q  343 ttataa 348  Q
    ||||||    
T  41484271 ttataa 41484266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 299 - 478
Target Start/End: Complemental strand, 9161774 - 9161599
Alignment:
Q  299 aatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccctttatttnnnnnnnncattaataggtga 398  Q
    |||||| |||||||||||||||||| || ||||||| | |||| |||| |  |||||||||||||||||| || |||||        ||| ||||||||     
T  9161774 aatttctcattccattgtttggaaaatcaacggaacaggatgagttatgaattttttattccaattttactctatattt--agaaaacatcaataggtgg 9161677  T
Q  399 aattcttaactcaattcaatc--aatgtggttattttggcgtgttcatgagtagcaccaatataaatggttctttgaaacga 478  Q
    |||| |||||||||||| |||   || ||||||||||||| ||||    ||||||||||||||| ||||||| || ||||||    
T  9161676 aatttttaactcaattctatcgatatttggttattttggcatgtt----agtagcaccaatatacatggttcattcaaacga 9161599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 42 - 136
Target Start/End: Original strand, 33257760 - 33257854
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactcgat 136  Q
    ||||||||||| | ||  |||||||||||||||||| ||||| ||  |||||||||||||||||||||| | || || |||||| | ||||||||    
T  33257760 acaaattcagggattaaattgatatttcgcataattaagggacgaagttggccgacccgtaaaaattcagggacgaagttgatgatccactcgat 33257854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 32835949 - 32835872
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactcgatt 137  Q
    |||||||||||||||||| ||||| || |||| ||||||||| |||||||| | || || |||||| |||||||||||    
T  32835949 ttgatatttcgcataattaagggacgaatttgaccgacccgtgaaaattcagggacgaagttgatgattcactcgatt 32835872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 42619362 - 42619286
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactcgat 136  Q
    |||||||||||||||||||||||| ||  ||| ||||||||| |||||||| | || || |||||| ||||||||||    
T  42619362 ttgatatttcgcataattgagggacgaaattgaccgacccgtgaaaattcagggacgaagttgatgattcactcgat 42619286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 372
Target Start/End: Original strand, 16596784 - 16596862
Alignment:
Q  294 gaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccctt 372  Q
    ||||| ||||| |||||||||||||| ||| | || | ||  |||||| ||||||| ||||||||||||||||||||||    
T  16596784 gaacatatttctcattccattgtttgaaaaattgatgtaatggaatgagttataacttttttattccaattttaccctt 16596862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 24498065 - 24498121
Alignment:
Q  40 tgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccga 96  Q
    ||||||||||||| ||||  ||||| | |||||||||||||||||||||||| ||||    
T  24498065 tgacaaattcagggactaatttgatttatcgcataattgagggatgattttgaccga 24498121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 35291139 - 35291071
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattca 110  Q
    ||||||||||| | ||  |||||||||| |||| ||||||||||| ||||||||| |||| ||||||||    
T  35291139 acaaattcagggattaaattgatatttcacatagttgagggatgaatttggccgaaccgtgaaaattca 35291071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 17574438 - 17574355
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccga 96  Q
    |||||||||||| ||||  ||||||||||  ||||||||| ||||  | ||||||||||| |||| ||||| || |||||||||    
T  17574438 gacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttggccga 17574355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 18726656 - 18726565
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||| ||| ||||  |||||||||||||||||||||||| ||  ||||   ||||||||||||||| | || || |||||| |||||||    
T  18726656 acaaattaagggactaaattgatatttcgcataattgagggacgaagttggggaacccgtaaaaattcagggacgaagttgatgattcactc 18726565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 30085773 - 30085727
Alignment:
Q  171 aggctctgtttggataacttaaaactaacggaacggagcggaatgga 217  Q
    |||||||||||||||||| | ||||||||||| |||| |||||||||    
T  30085773 aggctctgtttggataacatgaaactaacggagcggaacggaatgga 30085727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 38597061 - 38597012
Alignment:
Q  17 gagggacctttttattggacgtctgacaaattcaggaactaggttgatat 66  Q
    |||||||||||||  ||||||||||||||||| ||| |||| ||||||||    
T  38597061 gagggacctttttgatggacgtctgacaaattaagggactaagttgatat 38597012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 16921500 - 16921444
Alignment:
Q  292 tggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataa 348  Q
    ||||||| ||||| |||||||||||||||||| | |||||||  |||||| ||||||    
T  16921500 tggaacagatttctcattccattgtttggaaaattgacggaatagaatgagttataa 16921444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 24232243 - 24232179
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaa 106  Q
    |||||||||| || ||| |||||||||| ||||||||||| |||| ||| ||||| || ||||||    
T  24232243 acaaattcagaaattagattgatatttcacataattgaggaatgaattttgccgatccataaaaa 24232179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 38176723 - 38176655
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattca 110  Q
    ||||||||||| | ||  |||||||||||||||||| ||||| || ||||||| |||| | ||||||||    
T  38176723 acaaattcagggattaaattgatatttcgcataattaagggacgaatttggccaacccatgaaaattca 38176655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 38203947 - 38203879
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattca 110  Q
    ||||||||||| | ||  |||||||||||||||||| ||||| || ||||||| |||| | ||||||||    
T  38203947 acaaattcagggattaaattgatatttcgcataattaagggacgaatttggccaacccatgaaaattca 38203879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 42897768 - 42897898
Alignment:
Q  4 agagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgta 102  Q
    |||||||||| ||||||||||||||||  ||||||||||||||||||| | |||| ||||||||||| ||||||||||||| || |||||||||||||||    
T  42897768 agagcacttggacggagggacctttttgatggacgtctgacaaattcaaggactaagttgatatttcacataattgagggacgaatttggccgacccgta 42897867  T
Q  103 aaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||| ||  ||||||||||||||||    
T  42897868 aaaattcaaggacggatttgatggttcactc 42897898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 1320737 - 1320614
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||| ||||||| ||  ||||||||||||||||||||| |||| |||||||||| ||||||||||||||||| ||| |||||||||| |||||| |||    
T  1320737 gacggaaggaccttatttatggacgtctgacaaattcagggactaagttgatattttgcataattgagggatgaatttagccgacccgtgaaaatttaag 1320638  T
Q  113 aactaatttgatggttcactcgat 136  Q
     || ||||||||||||||||||||    
T  1320637 gacaaatttgatggttcactcgat 1320614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 31201148 - 31201269
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||||||||||||||  ||||||||||| ||||||||| | ||  |||||||||||||||||||| ||| || |||||||||||||| |||||||| |     
T  31201148 acggagggacctttttgatggacgtctgataaattcagggattaaattgatatttcgcataattgatggacgaatttggccgacccgtgaaaattcaggg 31201247  T
Q  114 actaatttgatggttcactcga 135  Q
    ||||| ||||||||||||||||    
T  31201248 actaaattgatggttcactcga 31201269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 33160155 - 33160272
Alignment:
Q  16 ggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaac 115  Q
    ||||||||||||||  ||| ||||||||||||||||  |||| ||||||||||| |||||||||||||||| ||||||||||| || |||||||||| ||    
T  33160155 ggagggacctttttgatgggcgtctgacaaattcagagactaagttgatatttcacataattgagggatgaatttggccgacctgtgaaaattcaaggac 33160254  T
Q  116 taatttgatggttcactc 133  Q
     |||||||||||| ||||    
T  33160255 gaatttgatggtttactc 33160272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 37526027 - 37526147
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||||||||||||||  |||| |||||| ||||||||| |||| ||||||||||||||||||||| | |||| |||| ||||| ||| ||||||||||    
T  37526027 gacggagggacctttttgatggatgtctgaaaaattcagggactaagttgatatttcgcataattgaagaatgaatttgaccgacgcgtgaaaattcaag 37526126  T
Q  113 aactaatttgatggttcactc 133  Q
     || |||||||||||||||||    
T  37526127 gacgaatttgatggttcactc 37526147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 4 - 138
Target Start/End: Original strand, 462364 - 462499
Alignment:
Q  4 agagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgta 102  Q
    |||||||||| | ||||||| ||||||  ||||||| ||||||||||| | |||| ||||||||||||||||||||| |||||| ||||||||| | |||    
T  462364 agagcacttggatggagggatctttttgatggacgtttgacaaattcaaggactaagttgatatttcgcataattgacggatgaatttggccgatctgta 462463  T
Q  103 aaaattcaagaactaatttgatggttcactcgattt 138  Q
    |||||||||  || ||||||||||||||||| ||||    
T  462464 aaaattcaatgacgaatttgatggttcactctattt 462499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 174 - 373
Target Start/End: Complemental strand, 29845124 - 29844924
Alignment:
Q  174 ctctgtttggataacttaaaactaacggaacggagcggaatggaacaaaataaaattgaacggaat--aacggagtggaaaaaatattccactccactgt 271  Q
    ||||||||||||| ||||||  ||||||| |||| ||||| ||||   |||| ||| ||||||||   || |||  |||| ||| ||  || ||||||||    
T  29845124 ctctgtttggatagcttaaatttaacggagcggaacggaacggaatggaatataatggaacggaacggaatggaacggaataaagatatcattccactgt 29845025  T
Q  272 ttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccct 371  Q
    |||||||||| ||||||||||||||| |||||| ||||||||||||||  ||||||| |||||  |||| |||||||| |||||||| ||||||||||||    
T  29845024 ttggatatttaatgacggaatggaactaatttcccattccattgtttgagaagtcgatggaacataatggattataac-tttttatttcaattttaccct 29844926  T
Q  372 tt 373  Q
    ||    
T  29844925 tt 29844924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 32822481 - 32822361
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||| ||||||||||  ||||| ||||||||||||||| |||| ||||||||||   ||||||||||||||| ||||||||| || ||||||||||||    
T  32822481 gacggaaggacctttttgatggacatctgacaaattcagggactaagttgatattttaaataattgagggatgaatttggccgatccataaaaattcaag 32822382  T
Q  113 aactaatttgatggttcactc 133  Q
     || || ||||||||||||||    
T  32822381 gacgaagttgatggttcactc 32822361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 38882792 - 38882921
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| |||||||||| |||||  ||||||||||||||||||||| | ||  ||||||| ||||||| |||| |||||| |||| |||| |||| |    
T  38882792 gagcacttggacggagggacattttttatggacgtctgacaaattcagggattaaattgatatctcgcatagttgaaggatgaatttgaccgatccgtga 38882891  T
Q  104 aaattcaagaactaatttgatggttcactc 133  Q
    ||||||||| || |||||||||||||||||    
T  38882892 aaattcaaggacgaatttgatggttcactc 38882921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 138
Target Start/End: Original strand, 25373614 - 25373718
Alignment:
Q  34 gacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||| |||| |||||||||  ||| |||||||||| |  || |||||| |||||||    
T  25373614 gacgtctgacaaattcaggaattaagttgatatttcgcataattgaggaatgaatttggccgatgcgtgaaaattcaaggatgaacttgatgattcactc 25373713  T
Q  134 gattt 138  Q
    |||||    
T  25373714 gattt 25373718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 138
Target Start/End: Original strand, 25707293 - 25707397
Alignment:
Q  34 gacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||| ||||||||||| | || |||||||||||||||||||||||||||| |||||||||  |||||||||| ||| |  || |||||| |||||||    
T  25707293 gacgtctcacaaattcagggattaagttgatatttcgcataattgagggatgaatttggccgatgcgtaaaaatttaaggatgaacttgatgattcactc 25707392  T
Q  134 gattt 138  Q
    |||||    
T  25707393 gattt 25707397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 31821538 - 31821418
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||||||||||||||  ||||||||||| |||||| || |||| ||||||||||||||||||||||||| ||  ||| |||||  || |||||||| |    
T  31821538 gacggagggacctttttgatggacgtctgataaattctgggactaagttgatatttcgcataattgagggacgaagttgaccgacgtgtgaaaattcagg 31821439  T
Q  113 aactaatttgatggttcactc 133  Q
     || |||||||| ||||||||    
T  31821438 gacgaatttgattgttcactc 31821418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 372
Target Start/End: Complemental strand, 20307834 - 20307721
Alignment:
Q  259 tccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttatt 358  Q
    |||| |||||||||||| |||||||||| |||  | || |||| |  ||||||| |||||||||||| |||||||  |||| ||||||||||||||||||    
T  20307834 tccattccactgtttgggtattttatgatggagcgaaataaatcttccattccaatgtttggaaagttgacggaatggaataaattataacatttttatt 20307735  T
Q  359 ccaattttaccctt 372  Q
    ||| ||||||||||    
T  20307734 ccatttttaccctt 20307721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 372
Target Start/End: Complemental strand, 21094467 - 21094354
Alignment:
Q  259 tccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttatt 358  Q
    |||| |||||||||||| |||||||||| |||  | || |||| |  ||||||| |||||||||||| |||||||  |||| ||||||||||||||||||    
T  21094467 tccattccactgtttgggtattttatgatggagcgaaataaatcttccattccaatgtttggaaagttgacggaatggaataaattataacatttttatt 21094368  T
Q  359 ccaattttaccctt 372  Q
    ||| ||||||||||    
T  21094367 ccatttttaccctt 21094354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 33750378 - 33750471
Alignment:
Q  4 agagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccga 96  Q
    |||||||||| ||||||||||||||||  || | |||||||||||||||| |||| ||||||||||||||||||||||||| ||  ||||||||    
T  33750378 agagcacttggacggagggacctttttgatgaatgtctgacaaattcagggactaagttgatatttcgcataattgagggacgaagttggccga 33750471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 247 - 372
Target Start/End: Original strand, 34924039 - 34924164
Alignment:
Q  247 tggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattat 346  Q
    ||||| ||| ||| || |||| |||||||||| ||||||| |||| | ||| | |||  ||||||||||||||||||||  ||||||| ||| || ||||    
T  34924039 tggaataaagatttcattccattgtttggatactttatgatggaacgaaactagttttccattccattgtttggaaagttaacggaacggaacgagttat 34924138  T
Q  347 aacatttttattccaattttaccctt 372  Q
    ||| ||||||||||||||||||||||    
T  34924139 aacttttttattccaattttaccctt 34924164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 372
Target Start/End: Complemental strand, 44606004 - 44605891
Alignment:
Q  259 tccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttatt 358  Q
    |||| ||||||  |||| |||||||||| ||| ||||| |||| |  ||||||| |||||||||||| |||||||  |||| ||||||||||||||||||    
T  44606004 tccattccactccttgggtattttatgatggagtggaataaatcttccattccaatgtttggaaagttgacggaatggaataaattataacatttttatt 44605905  T
Q  359 ccaattttaccctt 372  Q
    ||| ||||||||||    
T  44605904 ccatttttaccctt 44605891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 8654628 - 8654500
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| ||||||||||| ||||  ||||||||||| ||||||| ||| ||  | |||||||||||||||||||| | || |||| ||||| |||||    
T  8654628 gagcacttggacggagggacccttttgatggacgtctgataaattcaagaattaaat-gatatttcgcataattgaggaacgaatttgaccgactcgtaa 8654530  T
Q  104 aaattcaagaactaatttgatggttcactc 133  Q
    |||||||   ||||| ||||||||||||||    
T  8654529 aaattcagagactaaattgatggttcactc 8654500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 40019247 - 40019156
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  |||||||||||||||||||||||| ||  |||||||||||||||||||||||  || || |||||| |||||||    
T  40019247 acaaattcagggattaaattgatatttcgcataattgagggacgaagttggccgacccgtaaaaattcaaagacgaagttgatgattcactc 40019156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 33748423 - 33748331
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactcg 134  Q
    ||||||||||||| ||  |||||||||||||||||||| ||| ||  ||||||||||||| |||||||| | || || |||||| ||||||||    
T  33748423 acaaattcaggaattaaattgatatttcgcataattgaaggacgaagttggccgacccgtgaaaattcagggacgaagttgatgattcactcg 33748331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 461267 - 461184
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatg 125  Q
    ||||||||||| | ||  ||| |||||| |||||||||||||||| |||||||||||||| |||||||||| || || ||||||    
T  461267 acaaattcagggattaaattgttatttcacataattgagggatgaatttggccgacccgtgaaaattcaaggacgaagttgatg 461184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 306 - 372
Target Start/End: Original strand, 14111691 - 14111757
Alignment:
Q  306 cattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccctt 372  Q
    ||||||||||||||||||||   |||||| ||| || ||||||| ||||||||||||||||||||||    
T  14111691 cattccattgtttggaaagttagcggaacggaacgagttataacttttttattccaattttaccctt 14111757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 42 - 112
Target Start/End: Complemental strand, 37524949 - 37524879
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    ||||||||||  | ||| |||||||||| ||||||| |||||||| |||| ||||||||||||||||||||    
T  37524949 acaaattcagagattagattgatatttcacataattaagggatgaatttgaccgacccgtaaaaattcaag 37524879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 32824289 - 32824362
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||||||||||||||||  | |||||||||||||| ||||||||  ||| || |||||| |||||||    
T  32824289 ttgatatttcgcataattgagggactaatttggccgacccgtgaaaattcagaaacaaagttgatgattcactc 32824362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 38881501 - 38881429
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcact 132  Q
    |||| |||||||||||||||||||||| |||||| ||  ||| |||||||||| || ||||||||| ||||||    
T  38881501 ttgacatttcgcataattgagggatgaatttggctgattcgtgaaaattcaaggacgaatttgatgattcact 38881429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 31199576 - 31199485
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  |||||||||| ||||||| ||||| || |||||||||||||| | |||||| | ||||| |||||| |||||||    
T  31199576 acaaattcagggattaaattgatatttctcataattaagggacgaatttggccgacccgtgataattcagggactaagttgatgattcactc 31199485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 171 - 218
Target Start/End: Original strand, 42024662 - 42024709
Alignment:
Q  171 aggctctgtttggataacttaaaactaacggaacggagcggaatggaa 218  Q
    ||||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  42024662 aggctctgtttggataagttaaaaccaacggaacggagcggaacggaa 42024709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 8609811 - 8609921
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||||||||| ||||  ||||||||||  ||||||||| ||||  | ||||||||||| |||| ||||| || |||||||||    | ||||||||||    
T  8609811 gacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttggccgattttttaaaattcaag 8609910  T
Q  113 aactaatttga 123  Q
    ||| |||||||    
T  8609911 aacgaatttga 8609921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 31823494 - 31823544
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattca 110  Q
    |||||||||||||||||||||||| ||  ||||||||||||| ||||||||    
T  31823494 ttgatatttcgcataattgagggacgaagttggccgacccgtgaaaattca 31823544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 374
Target Start/End: Complemental strand, 38680573 - 38680467
Alignment:
Q  269 tgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataac-atttttattccaatttta 367  Q
    ||||||||||||||| || ||||| |||| |||||| || ||||||| ||||||||| ||||||||  || |  |||||||  ||||||||||  |||||    
T  38680573 tgtttggatattttacgatggaattgaactaatttcccactccattgcttggaaagtggacggaacgaaaagtgttataactttttttattcctttttta 38680474  T
Q  368 cccttta 374  Q
    |||||||    
T  38680473 cccttta 38680467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 33368832 - 33368759
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||||||||||||| ||||| || | ||||  |||||||||||||  || ||||||||| |||||||    
T  33368832 ttgatatttcgcataattgagagatgaattcgaccgattcgtaaaaattcaaagacgaatttgatgattcactc 33368759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 42894867 - 42894798
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaa 111  Q
    ||||||||||| | ||  |||||||||||||||||| ||||| || ||||| |||||||| |||||||||    
T  42894867 acaaattcagggattaaattgatatttcgcataattaagggacgaatttggtcgacccgtgaaaattcaa 42894798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 9184503 - 9184383
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||||||||| |||   | ||||||||||||||||||| ||||  |||||||||||| || ||| | || || |||||||||  |||  |||||||||    
T  9184503 gacggagggaccatttcgatcgacgtctgacaaattcagggactaatttgatatttcgcgtagttgggcgacgaatttggccgattcgtgcaaattcaag 9184404  T
Q  113 aactaatttgatggttcactc 133  Q
     || || |||||| |||||||    
T  9184403 gacgaaattgatgattcactc 9184383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 13108360 - 13108430
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgaggga 83  Q
    |||||||||||| ||||  ||||||||||  ||||||||| ||||  ||||||||||||| |||| |||||    
T  13108360 gacggagggaccattttgatggacgtctgtaaaattcagggactaatttgatatttcgcaaaattcaggga 13108430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 11031522 - 11031450
Alignment:
Q  40 tgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    ||||||| ||||||||||  |||||||||||||||||||  | | |||||||||| | || || |||||||||    
T  11031522 tgacaaactcaggaactaatttgatatttcgcataattggagaacgattttggcccatccttacaaattcaag 11031450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 24526987 - 24526919
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattca 110  Q
    ||||||||||| | ||  |||||||||| ||||||||||||| ||  |||||||||||||  |||||||    
T  24526987 acaaattcagggattaaattgatatttcacataattgagggacgaagttggccgacccgtgtaaattca 24526919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 37417402 - 37417273
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaa 103  Q
    ||||||||| ||| ||||||||||||  ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||| | |    
T  37417402 gagcacttggacgaagggacctttttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgagggatgaatttggccgacccatga 37417303  T
Q  104 aaattcaagaactaatttgatggttcactc 133  Q
    ||||||||| || ||| |||||||||||||    
T  37417302 aaattcaaggacgaatatgatggttcactc 37417273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 25619777 - 25619661
Alignment:
Q  16 ggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaac 115  Q
    ||||||||||||||  ||||| | ||||||||||||| |||| |||||||||| ||||||||||||||||| |||| ||||||| |||||||||||| ||    
T  25619777 ggagggacctttttgatggacatatgacaaattcagggactaagttgatattttgcataattgagggatgaatttgaccgacccataaaaattcaaggac 25619678  T
Q  116 taatttgatggttcact 132  Q
     ||||||||||||||||    
T  25619677 gaatttgatggttcact 25619661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 39676 - 39560
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||||||||||||||| | |||| |||| ||||||||| | ||  |||||||||||||||||||||||| || ||||||||||||||||||||||| |    
T  39676 gacggagggacctttttaatcgacgcctgataaattcagggattaaattgatatttcgcataattgagggacgaatttggccgacccgtaaaaattcagg 39577  T
Q  113 aactaatttgatggttc 129  Q
     ||||| ||||||||||    
T  39576 gactaaattgatggttc 39560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 15432439 - 15432328
Alignment:
Q  22 acctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaattt 121  Q
    ||||||||  ||||||||||||||||||||  ||||  ||||||||||||||||||||||||||| |||| ||||||| |||||||||||| |  |||||    
T  15432439 acctttttgatggacgtctgacaaattcagagactaaattgatatttcgcataattgagggatgaatttgaccgacccataaaaattcaaggataaattt 15432340  T
Q  122 gatggttcactc 133  Q
    ||||||||||||    
T  15432339 gatggttcactc 15432328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 29909654 - 29909784
Alignment:
Q  4 agagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgta 102  Q
    |||||||||| ||||||||||||||||  ||||||||||||||||| ||| ||||  ||||||||||||||||||||||||  |  ||||||||| |||     
T  29909654 agagcacttggacggagggacctttttgatggacgtctgacaaattaagggactaaattgatatttcgcataattgagggacaaagttggccgacgcgtg 29909753  T
Q  103 aaaattcaagaactaatttgatggttcactc 133  Q
    |||||||| | || |||||||||||||||||    
T  29909754 aaaattcagggacaaatttgatggttcactc 29909784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 13 - 129
Target Start/End: Complemental strand, 42879475 - 42879360
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||||||||||||||  |||||||||||||||||||   |||| |||||| |||||||||||| |||||||| |||| |||||||||||||||| |||    
T  42879475 gacggagggacctttttgatggacgtctgacaaattcatagactaagttgat-tttcgcataattaagggatgaatttgaccgacccgtaaaaatttaag 42879377  T
Q  113 aactaatttgatggttc 129  Q
     || |||||||||||||    
T  42879376 gacgaatttgatggttc 42879360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 15372618 - 15372499
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||||||||||||||  ||||||||||| ||||||||| | ||  ||||||||| |||||||||||||  || |||||||||||||| |||||||| |     
T  15372618 acggagggacctttttgatggacgtctgataaattcagggattaaattgatattttgcataattgaggggcgaatttggccgacccgtgaaaattcaggg 15372519  T
Q  114 actaatttgatggttcactc 133  Q
    ||||| ||||||||||||||    
T  15372518 actaaattgatggttcactc 15372499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 41706658 - 41706539
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||||||||||||||  |||||||  || ||||||||| | ||  |||||||||||||||||||||||| || |||| ||||||||| |||||||| ||    
T  41706658 acggagggacctttttgatggacgttcgataaattcagggattaaattgatatttcgcataattgagggacgaatttgaccgacccgtgaaaattcagga 41706559  T
Q  114 actaatttgatggttcactc 133  Q
    ||||| ||||||||||||||    
T  41706558 actaaattgatggttcactc 41706539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 164 - 374
Target Start/End: Complemental strand, 10355054 - 10354842
Alignment:
Q  164 aaaactgaggctctgtttggataacttaaaactaacggaacggagcggaatggaacaaaataaaattgaacggaat--aacggagtggaaaaaatattcc 261  Q
    |||||| ||||  |||||||||||  ||||||||||||| |||| |||||||||    ||| | || | |||||||  ||||   ||||| ||| ||| |    
T  10355054 aaaactaaggcattgtttggataatctaaaactaacggatcggaacggaatggagtggaatgagatgggacggaatggaacgtcatggaataaaaatttc 10354955  T
Q  262 actccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattcca 361  Q
    | |||| ||||||||||||| | ||||||||||||| |||||| || |||||||||||||| ||  ||||||| |||    ||||||| |||||||||||    
T  10354954 attccattgtttggatatttcaagacggaatggaactaatttcccactccattgtttggaaggtgaacggaacggaacatgttataacttttttattcca 10354855  T
Q  362 attttacccttta 374  Q
    |||||||||||||    
T  10354854 attttacccttta 10354842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 269 - 374
Target Start/End: Original strand, 17999014 - 17999119
Alignment:
Q  269 tgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttac 368  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||| |||||||| | | |  | ||||| |||||||| || ||||||    
T  17999014 tgtttggatattttatgacggaatggaactaatttcccattccattgtttgaaaagtggacggaacgggaagtgtcataacttttttatttcatttttac 17999113  T
Q  369 ccttta 374  Q
    ||||||    
T  17999114 ccttta 17999119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 240 - 374
Target Start/End: Original strand, 28198526 - 28198660
Alignment:
Q  240 aacggagtggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaat 339  Q
    ||||||| |||| |||  |||||| | | |||||||||||||||  |||||||||||| |||||  || | |||||||||||||||  | ||||| ||||    
T  28198526 aacggagcggaacaaaggttccaccctattgtttggatattttactacggaatggaactaattttccacttcattgtttggaaagtgaatggaacggaat 28198625  T
Q  340 gaattataacatttttattccaattttacccttta 374  Q
    || ||||||| ||||||||||| ||||||||||||    
T  28198626 gatttataacttttttattccatttttacccttta 28198660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 243 - 373
Target Start/End: Complemental strand, 28219810 - 28219680
Alignment:
Q  243 ggagtggaaaaaatattccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaa 342  Q
    ||||||||| ||| ||| || |||| |||||||||||| || | ||||||||||| |||||| || ||||||||||||||||| |||||||   ||| |     
T  28219810 ggagtggaacaaagatttcattccattgtttggatattatacggcggaatggaactaatttcccactccattgtttggaaagtggacggaatgaaattag 28219711  T
Q  343 ttataacatttttattccaattttacccttt 373  Q
    ||||||| |||||||| || |||||||||||    
T  28219710 ttataacttttttatttcatttttacccttt 28219680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 39401 - 39521
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    ||||| |||||||||||  || |||||||||||||||||| |||| ||||||||||||||||||||||| |  |  ||||| ||| ||| |||||||  |    
T  39401 gacggggggacctttttgatgaacgtctgacaaattcagggactaagttgatatttcgcataattgaggtacaaagttggctgacgcgtgaaaattcggg 39500  T
Q  113 aactaatttgatggttcactc 133  Q
     || |||||||||||||||||    
T  39501 gacaaatttgatggttcactc 39521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 42001706 - 42001610
Alignment:
Q  37 gtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||||||| | | ||  ||||||||||||||||| ||||||| | ||||| | ||||||||||||||||| || |||||||||||||||||    
T  42001706 gtctgacaaattcaaggattaaattgatatttcgcataatagagggataaatttggacaacccgtaaaaattcaaggacgaatttgatggttcactc 42001610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 377
Target Start/End: Original strand, 22017709 - 22017829
Alignment:
Q  257 attccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacattttta 356  Q
    |||||| |||| |||| ||||| ||||  | |||||| ||| |||||  |||||||||||| ||||| | |||||||| |||||||||||||  ||||||    
T  22017709 attccattccattgttcggatactttacaatggaatgcaactaatttttcattccattgttaggaaaattgacggaacggaatgaattataattttttta 22017808  T
Q  357 ttccaattttaccctttattt 377  Q
    |||  ||||||||||||||||    
T  22017809 ttcatattttaccctttattt 22017829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 28248175 - 28248266
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  |||||||||||||||||||||||| ||  |||||||||||||||||||||| | || || |||||| |||||||    
T  28248175 acaaattcagggattaaattgatatttcgcataattgagggacgaagttggccgacccgtaaaaattcagggacgaagttgatgattcactc 28248266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 41160 - 41233
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||||||||||||||||| || |||||||||||||| |||||||| | || || |||||| |||||||    
T  41160 ttgatatttcgcataattgagggacgaatttggccgacccgtgaaaattcagggacgaagttgatgattcactc 41233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 133
Target Start/End: Complemental strand, 361546 - 361445
Alignment:
Q  32 tggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcac 131  Q
    |||||||||||| ||||||   ||||  |||||||||| ||||||||||||||||||||||||||  | | |||||||||| || || |||||| |||||    
T  361546 tggacgtctgacgaattcaatgactaatttgatatttcacataattgagggatgattttggccgattcatgaaaattcaaggacgaagttgatgattcac 361447  T
Q  132 tc 133  Q
    ||    
T  361446 tc 361445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 42 - 138
Target Start/End: Original strand, 41708430 - 41708526
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactcgattt 138  Q
    ||||||||||| | ||  |||||||||||||||||||||||| || |||||||||||||| | ||||||   ||||| |||||| ||||||| ||||    
T  41708430 acaaattcagggattaaattgatatttcgcataattgagggacgaatttggccgacccgtgataattcagagactaagttgatgattcactctattt 41708526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 11021624 - 11021533
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  |||||||||||||||||||||||| ||  ||||||||||||| |||||||| | || || |||||| |||||||    
T  11021624 acaaattcagggattaaattgatatttcgcataattgagggacgaagttggccgacccgtgaaaattcagggacgaagttgatgattcactc 11021533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 15373888 - 15373979
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||||| ||  |||||||||||||||||||||| | || ||||||||||| || | |||||| | ||||| |||||| |||||||    
T  15373888 acaaattcaggaattaaattgatatttcgcataattgaggaacgaatttggccgacctgtgataattcagggactaagttgatgattcactc 15373979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 306 - 372
Target Start/End: Original strand, 12432863 - 12432928
Alignment:
Q  306 cattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccctt 372  Q
    |||||||||||||||||||| |||||||  |||| ||||||||| ||||||||||| ||||||||||    
T  12432863 cattccattgtttggaaagttgacggaatggaataaattataac-tttttattccatttttaccctt 12432928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 134
Target Start/End: Complemental strand, 28246764 - 28246662
Alignment:
Q  32 tggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcac 131  Q
    ||||||||  ||||||||||||||||  |||||||||||   ||||  |||| || |||||||||||| |||||||||| | || || ||||||||||||    
T  28246764 tggacgtcaaacaaattcaggaactattttgatatttcgttaaatttggggacgaatttggccgacccctaaaaattcagggacgaaattgatggttcac 28246665  T
Q  132 tcg 134  Q
    |||    
T  28246664 tcg 28246662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 92342 - 92419
Alignment:
Q  5 gagcacttg-acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagg 81  Q
    ||||||||| || |||||||||||||  || ||||||||||||||||   |||| |||||||||||||||||||||||    
T  92342 gagcacttggactgagggacctttttgatgaacgtctgacaaattcaaagactaagttgatatttcgcataattgagg 92419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 11315339 - 11315396
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcg 70  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||  |||||||||||    
T  11315339 gacggagggaccattttgatggacgtctgacaaattcaggaactattttgatatttcg 11315396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 42880829 - 42880902
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||||||||||| ||||| || |||| |||||||||||||||||| | || || |||||| |||||||    
T  42880829 ttgatatttcgcataattaagggacgaatttgaccgacccgtaaaaattcagggacgaagttgatgattcactc 42880902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 37418769 - 37418860
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||| ||| | ||| ||||||||| |||||||| | ||| || |||||||||||||| |||||||||| || || |||||| |||||||    
T  37418769 acaaatttagggattagattgatattttgcataattaaaggacgaatttggccgacccgtgaaaattcaagtacgaagttgatgattcactc 37418860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 23701730 - 23701629
Alignment:
Q  275 gatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttacccttta 374  Q
    ||||||||||||| ||||   || |||||  |||||||||||||||||||| || | ||  |||||| ||||||| ||||||||||||||||  ||||||    
T  23701730 gatattttatgacagaataagactaattttccattccattgtttggaaagttgatgaaatggaatgagttataac-tttttattccaattttgaccttta 23701632  T
Q  375 ttt 377  Q
    |||    
T  23701631 ttt 23701629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 33284 - 33193
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  |||||||||| ||||||||| ||| ||  ||||||||||||| |||||||| | || || |||||| |||||||    
T  33284 acaaattcagggattaaattgatatttcacataattgaaggacgaagttggccgacccgtgaaaattcagggacgaagttgatgattcactc 33193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 16763196 - 16763086
Alignment:
Q  13 gacggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaag 112  Q
    |||||||||||| ||||  ||||||||||  ||||||||| ||||  | ||||||||||| |||| ||||| || |||| ||||    ||||||||||||    
T  16763196 gacggagggaccattttgatggacgtctgtaaaattcagggactaaatagatatttcgcaaaattcagggacgaatttgaccgatttttaaaaattcaag 16763097  T
Q  113 aactaatttga 123  Q
     || |||||||    
T  16763096 gacgaatttga 16763086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 44247081 - 44247014
Alignment:
Q  309 tccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccctttattt 377  Q
    |||||||||||| |||| ||| |||  ||||| |||||||  ||||||||||||||||| |||||||||    
T  44247081 tccattgtttgggaagttgacagaatggaatgtattataat-tttttattccaattttaacctttattt 44247014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 44247211 - 44247175
Alignment:
Q  171 aggctctgtttggataacttaaaactaacggaacgga 207  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  44247211 aggctttgtttggataacttaaaactaacggagcgga 44247175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 258 - 377
Target Start/End: Original strand, 43493 - 43612
Alignment:
Q  258 ttccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttat 357  Q
    ||||| |||| ||||||||||||||| ||||||||| ||| |||||| |||||||||||||||||||| ||| |||| |||||| ||||||| |||||||    
T  43493 ttccattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacagaacggaatgagttataacttttttat 43592  T
Q  358 tccaattttaccctttattt 377  Q
    | ||||||||||||||||||    
T  43593 ttcaattttaccctttattt 43612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 258 - 377
Target Start/End: Original strand, 77213 - 77332
Alignment:
Q  258 ttccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttat 357  Q
    ||||| |||| ||||||||||||||| ||||||||| ||| |||||| |||||||||||||||||||| ||| |||| |||||| ||||||| |||||||    
T  77213 ttccattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagtagacagaacggaatgagttataacttttttat 77312  T
Q  358 tccaattttaccctttattt 377  Q
    | ||||||||||||||||||    
T  77313 ttcaattttaccctttattt 77332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 43389 - 43430
Alignment:
Q  171 aggctctgtttggataacttaaaactaacggaacggagcgga 212  Q
    ||||| |||||||||| ||||||||||||| |||||||||||    
T  43389 aggctttgtttggatatcttaaaactaacgaaacggagcgga 43430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 77109 - 77150
Alignment:
Q  171 aggctctgtttggataacttaaaactaacggaacggagcgga 212  Q
    ||||| |||||||||| ||||||||||||| |||||||||||    
T  77109 aggctttgtttggatatcttaaaactaacgaaacggagcgga 77150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 6639 - 6760
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||||||||||||||  |||| |||||| ||||||||| | ||  |||||||||| ||||||||||||| || |||||||||||||| |||||||| |     
T  6639 acggagggacctttttgatggaggtctgataaattcagggattaaattgatatttcacataattgagggacgaatttggccgacccgtgaaaattcaggg 6738  T
Q  114 actaatttgatggttcactcga 135  Q
    ||||| ||||||||||||||||    
T  6739 actaaattgatggttcactcga 6760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 4641474 - 4641353
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||||||||||||||  |||| |||||| ||||||||| | ||  |||||||||| ||||||||||||| || |||||||||||||| |||||||| |     
T  4641474 acggagggacctttttgatggaggtctgataaattcagggattaaattgatatttcacataattgagggacgaatttggccgacccgtgaaaattcaggg 4641375  T
Q  114 actaatttgatggttcactcga 135  Q
    ||||| ||||||||||||||||    
T  4641374 actaaattgatggttcactcga 4641353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 3018439 - 3018533
Alignment:
Q  16 ggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattca 110  Q
    ||||||||||||||  ||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||  ||||||||| ||| ||||||||    
T  3018439 ggagggacctttttgatggacgtctgacaaattcagggactaagttgatatttcgcataattgagggacgaagttggccgacgcgtgaaaattca 3018533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 29077447 - 29077325
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||||||||||||||  ||||||||||||||||||||| |  |  |||| |||||||||||||||||||  | |||||||||| ||| |||||||| |     
T  29077447 acggagggacctttttgatggacgtctgacaaattcagggatgaaattgaaatttcgcataattgagggactaatttggccgacgcgtgaaaattcaggg 29077348  T
Q  114 actaatttgatggttcactcgat 136  Q
    || ||||||||||||||||||||    
T  29077347 acgaatttgatggttcactcgat 29077325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 14 - 136
Target Start/End: Complemental strand, 29112419 - 29112297
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||||||||||||||  ||||||||||||||||||||| |  |  |||| |||||||||||||||||||  | |||||||||| ||| |||||||| |     
T  29112419 acggagggacctttttgatggacgtctgacaaattcagggatgaaattgaaatttcgcataattgagggactaatttggccgacgcgtgaaaattcaggg 29112320  T
Q  114 actaatttgatggttcactcgat 136  Q
    ||||| |||||||||||||||||    
T  29112319 actaacttgatggttcactcgat 29112297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 2968258 - 2968139
Alignment:
Q  14 acggagggacctttttattggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaaga 113  Q
    ||||| ||||||||||  ||||||||||| ||||||||| | ||  |||||||||||||||||||||||| || |||||  ||||||| |||||| | |     
T  2968258 acggatggacctttttgatggacgtctgataaattcagggattaaattgatatttcgcataattgagggacgaatttgggagacccgtgaaaattgaggg 2968159  T
Q  114 actaatttgatggttcactc 133  Q
    ||||| ||||||||||||||    
T  2968158 actaaattgatggttcactc 2968139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 17950652 - 17950561
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||||| | ||  |||||||||||||||||||||||| ||  |||||||||||||||||||||| | |  || ||||||||||||||    
T  17950652 acaaattcagggattaaattgatatttcgcataattgagggacgaagttggccgacccgtaaaaattcagggatgaaattgatggttcactc 17950561  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 372
Target Start/End: Complemental strand, 10872045 - 10871928
Alignment:
Q  255 atattccactccactgtttggatattttatgacggaatggaacaaa-tttcacattccattgtttggaaagtcgacggaactgaatgaattataacattt 353  Q
    |||||||| |||| | |||||||||||||||| ||||||||| ||| ||||| |||| |||||||||||||| || ||||  ||| | |||||||| | |    
T  10872045 atattccattccattatttggatattttatgatggaatggaataaactttca-attctattgtttggaaagtggatggaatggaaagcattataacttat 10871947  T
Q  354 ttattccaattttaccctt 372  Q
    |||||||| ||||||||||    
T  10871946 ttattccatttttaccctt 10871928  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 369
Target Start/End: Complemental strand, 29644716 - 29644618
Alignment:
Q  271 tttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttacc 369  Q
    ||||||||||||||||  ||||| ||| |||||  ||||||||| |||| ||||| |||||| | | |||| ||||||| |||||||||||||||||||    
T  29644716 tttggatattttatgagagaatgaaactaatttttcattccattatttgaaaagtagacggagcaggatgagttataacttttttattccaattttacc 29644618  T

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Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 372
Target Start/End: Complemental strand, 10144872 - 10144760
Alignment:
Q  259 tccactccactgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttatt 358  Q
    |||| |||||||||||| |||||||||| |||  ||||   ||||  ||||||||| |||||||||| |||||||  |||| ||||||||| ||||||||    
T  10144872 tccattccactgtttgggtattttatgatggagcggaatgcattttccattccattatttggaaagttgacggaatggaataaattataac-tttttatt 10144774  T
Q  359 ccaattttaccctt 372  Q
    ||| ||||||||||    
T  10144773 ccatttttaccctt 10144760  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 4646234 - 4646307
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||||||||||||| ||| || |||  |||| ||||||||||||| | | ||| ||||||||||||||    
T  4646234 ttgatatttcgcataattgatggacgaatttaaccgatccgtaaaaattcagggattaagttgatggttcactc 4646307  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 29114794 - 29114867
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||| ||||||||||||||| |||  | |||||||||| ||| |||||||| | ||||| ||||||||||||||    
T  29114794 ttgaaatttcgcataattgaaggactaatttggccgacgcgtgaaaattcagggactaacttgatggttcactc 29114867  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 30639684 - 30639611
Alignment:
Q  60 ttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    ||||||||| ||||||||||||||  | |||||||||||||| |||||||| | || || |||||| |||||||    
T  30639684 ttgatattttgcataattgagggactaatttggccgacccgtgaaaattcagggacgaagttgatgattcactc 30639611  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 35174482 - 35174391
Alignment:
Q  42 acaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcactc 133  Q
    |||||||||| || ||  ||||||||||| |||||||||  | ||  |||||||||||||||||||||| | || || |||||| |||||||    
T  35174482 acaaattcagaaattaaattgatatttcgtataattgagaaacgaagttggccgacccgtaaaaattcagggacgaagttgatgattcactc 35174391  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 369
Target Start/End: Complemental strand, 7314332 - 7314234
Alignment:
Q  271 tttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttacc 369  Q
    |||||||||||||||  ||||||||||||| ||  ||||||||||||||  ||   |||||||  |||||| ||||||  |||| |||| |||||||||    
T  7314332 tttggatattttatggtggaatggaacaaagttgtcattccattgtttgagaatgagacggaatagaatgacttataattttttcattctaattttacc 7314234  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 370
Target Start/End: Complemental strand, 13106619 - 13106518
Alignment:
Q  269 tgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttac 368  Q
    ||||||||||||| | ||||||  |||| ||| ||   ||||||||||||||||||   ||| ||  |||||||||||||| |||||||| || ||||||    
T  13106619 tgtttggatatttaacgacggagcggaataaaatttctattccattgtttggaaagagaacgaaatagaatgaattataacttttttatttcatttttac 13106520  T
Q  369 cc 370  Q
    ||    
T  13106519 cc 13106518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 133
Target Start/End: Original strand, 17952065 - 17952166
Alignment:
Q  32 tggacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcac 131  Q
    ||||||||  ||||||||||| ||||  |||||||||||   ||||  |||| || |||||||||||| | |||||||| | || || ||||||||||||    
T  17952065 tggacgtcaaacaaattcagggactattttgatatttcgttaaatttggggacgaatttggccgacccctgaaaattcagggacgaaattgatggttcac 17952164  T
Q  132 tc 133  Q
    ||    
T  17952165 tc 17952166  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 132
Target Start/End: Original strand, 31210461 - 31210530
Alignment:
Q  63 atatttcgcataattgagggatgattttggccgacccgtaaaaattcaagaactaatttgatggttcact 132  Q
    ||||||||||||||| ||||| ||||||| |||| || || |||||||||||| ||  ||||| ||||||    
T  31210461 atatttcgcataattaagggacgattttgaccgatccttacaaattcaagaacgaagctgatgattcact 31210530  T

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Target: scaffold0039 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 197 - 372
Target Start/End: Complemental strand, 57794 - 57622
Alignment:
Q  197 aacggaacggagcggaatggaacaaaataaaattgaacggaataacggagtggaaaaaatattccactccactgtttggatattttatgacggaatggaa 296  Q
    ||||||||||| |||||||||||  |||  ||| |||||||||    || ||||| ||| ||| || |||| |||||||||| ||||||| |||| ||||    
T  57794 aacggaacggaacggaatggaacggaatggaatggaacggaatt---gaatggaataaagatttcattccattgtttggatactttatgatggaacggaa 57698  T
Q  297 caaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccctt 372  Q
    | | |||  ||||||||||||||||||||  ||||||| ||| || ||||||| |||||||| |||||||||||||    
T  57697 ctagttttccattccattgtttggaaagttaacggaacggaacgagttataacttttttatttcaattttaccctt 57622  T

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Target: scaffold0011 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 373
Target Start/End: Original strand, 8574 - 8675
Alignment:
Q  271 tttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccc 370  Q
    ||||||||||| ||||||||||||||| |||||| |||||||||||||   |||| ||  |||| |||||| ||||||| |||||||| |||||||||||    
T  8574 tttggatatttaatgacggaatggaactaatttctcattccattgtttaagaagttgatagaacagaatgagttataac-tttttatttcaattttaccc 8672  T
Q  371 ttt 373  Q
    |||    
T  8673 ttt 8675  T

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Target: scaffold1041 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 2197 - 2121
Alignment:
Q  34 gacgtctgacaaattcaggaactaggttgatatttcgcataattgagggatgattttggccgacccgtaaaaattca 110  Q
    ||||||||||||||| ||| | || |||||||||||||||||||||||||||| ||||| |||  ||||||||||||    
T  2197 gacgtctgacaaatttagggattaagttgatatttcgcataattgagggatgaatttggtcgatgcgtaaaaattca 2121  T

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Target: scaffold0204 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 269 - 371
Target Start/End: Original strand, 11724 - 11826
Alignment:
Q  269 tgtttggatattttatgacggaatggaacaaatttcacattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttac 368  Q
    ||||||| ||||||| ||||||  |||| ||| ||  |||| |||||||||||||||  ||||||| | || ||||||||| ||||||||||| ||||||    
T  11724 tgtttgggtattttacgacggagaggaataaaattatcatttcattgtttggaaagtgaacggaacagcataaattataacctttttattccatttttac 11823  T
Q  369 cct 371  Q
    |||    
T  11824 cct 11826  T

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Target: scaffold0075 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 372
Target Start/End: Original strand, 12156 - 12221
Alignment:
Q  306 cattccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccctt 372  Q
    ||||||||| |||||||||| |||||||  |||| ||||||||| ||||||||||| ||||||||||    
T  12156 cattccattatttggaaagttgacggaatggaataaattataac-tttttattccatttttaccctt 12221  T

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Target: scaffold0147 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 368
Target Start/End: Complemental strand, 25748 - 25687
Alignment:
Q  307 attccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttac 368  Q
    |||| |||||||||||||| ||||||||  |||||||||||| | |||||||| | ||||||    
T  25748 attctattgtttggaaagtagacggaacaaaatgaattataatacttttattctatttttac 25687  T

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Target: scaffold0110 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 377
Target Start/End: Original strand, 37940 - 38007
Alignment:
Q  309 tccattgtttggaaagtcgacggaactgaatgaattataacatttttattccaattttaccctttattt 377  Q
    ||||||||||||||||  |||||||  ||||| |||||||  |||||||| |||||||| |||||||||    
T  37940 tccattgtttggaaagatgacggaatggaatgtattataa-ttttttatttcaattttaacctttattt 38007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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