View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12060_low_5 (Length: 457)
Name: NF12060_low_5
Description: NF12060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12060_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 442
Target Start/End: Original strand, 2328967 - 2329400
Alignment:
| Q |
8 |
caaaggaacaaatagagaaatcaaaaaacaagagggacaaataagacttttatcaaattatccttattaagtattgcatattcaccattaacataaatgc |
107 |
Q |
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| T |
2328967 |
caaaggaacaaatagagaaatcaaaaaacaagagggacaaataagacttttatcaaattacccttattaagtattgcatattcaccattaacataaatgc |
2329066 |
T |
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| Q |
108 |
caagtaatattaacttagaagtgatgtaagtagtattaattaaagggtacagttgnnnnnnntatatattaatattgcattgaaaatcgatagttgacaa |
207 |
Q |
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| T |
2329067 |
caagtaatattaacttaggagtgatgtaagtagtattaattaaagggtacagttgaaaaaaaaaaatattaatattgcattgaaaatcgatagg-gacaa |
2329165 |
T |
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| Q |
208 |
atatcttttgtaaaaaggttgatttttgtggaatggagggagtaatgtttaaaggtcttccaattgatgtctaatatttgtcttatcttagaacagaaaa |
307 |
Q |
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| T |
2329166 |
atttcttttgtaaaaaggttgatttttgtggaatggagggagtaatgtttaaaggtcttccaattgatgtctaatatttgtcttatcttagaacagaaaa |
2329265 |
T |
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| Q |
308 |
acaaattatccatcgagatgtgaaatcatccaaagctaaagtcgctgattttggatttgctaagcttggtttggtcctgtaaacaacgaccatacacaca |
407 |
Q |
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| T |
2329266 |
acaaattatccatcgagatgtgaaatcatccaaagctaaagtcgctgattttggatttgctaagcttggtttggtcctgtaaacaacgaccatacacaca |
2329365 |
T |
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| Q |
408 |
tttctaccaaagtgaagggaacagtcggctatttg |
442 |
Q |
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| T |
2329366 |
tttctaccaaagtgaagggaacagtcggctatttg |
2329400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 47 - 340
Target Start/End: Original strand, 47774774 - 47775079
Alignment:
| Q |
47 |
aataagacttttatcaaattatccttattaagtattgcatattcaccattaacataaatgccaagtaatattaacttagaagtgatgtaagtagtattaa |
146 |
Q |
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||||||||||||| ||||||| |||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47774774 |
aataagacttttaccaaattacccttatcaagtatcgcatattcaccattagcataaatgccaagtaatattaacttaggagtgatgtaagtagtattaa |
47774873 |
T |
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| Q |
147 |
ttaaagggtacagttgnnnnnnntatatattaatattgcattgaaaatcgatagtt-------------gacaaatatcttttgtaaaaaggttgatttt |
233 |
Q |
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| T |
47774874 |
ttagagggtacaattgaaaaaaaaa-atattaatattgcattgaaaatcgaaagtgtcattcatttagggacaaatttcttttgtaaaaaggttgatttt |
47774972 |
T |
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| Q |
234 |
tgtggaatggagggagtaatgtttaaaggtcttccaattgatgtctaatatttgtcttatcttagaacagaaaaacaaattatccatcgagatgtgaaat |
333 |
Q |
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| T |
47774973 |
tgtggaatggagggagtaatgtttaaaggtcttccaattgatgtctaatatttgtcttatcttagaacagaaaaacaaattatccatcgagatgtgaaat |
47775072 |
T |
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| Q |
334 |
catccaa |
340 |
Q |
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||||||| |
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| T |
47775073 |
catccaa |
47775079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 341 - 442
Target Start/End: Original strand, 47775104 - 47775200
Alignment:
| Q |
341 |
agctaaagtcgctgattttggatttgctaagcttggtttggtcctgtaaacaacgaccatacacacatttctaccaaagtgaagggaacagtcggctatt |
440 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47775104 |
agctaaagtcgctgattttggatttgctaagcttgg-----tcctgtaaacaacgaccatacacacatttctaccaaagtgaagggaacagtcggctatt |
47775198 |
T |
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