View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12060_low_6 (Length: 397)

Name: NF12060_low_6
Description: NF12060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12060_low_6
NF12060_low_6
[»] chr1 (5 HSPs)
chr1 (1-379)||(29449275-29449644)
chr1 (1-190)||(29462304-29462487)
chr1 (193-261)||(29462215-29462283)
chr1 (218-292)||(29444247-29444321)
chr1 (218-292)||(29454254-29454328)
[»] chr2 (6 HSPs)
chr2 (1-292)||(9363454-9363762)
chr2 (218-292)||(12019793-12019867)
chr2 (218-292)||(11988326-11988400)
chr2 (218-288)||(12007150-12007220)
chr2 (145-193)||(9069069-9069117)
chr2 (196-296)||(9287782-9287882)
[»] chr8 (1 HSPs)
chr8 (196-292)||(41968300-41968397)
[»] chr7 (1 HSPs)
chr7 (229-293)||(45242651-45242715)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 29449644 - 29449275
Alignment:
Q  1 gatctttgtcacacttctgttggccttttctttcaccaaaggtcatccccattcacaattccatggggaatggatcccctcgtgtgagatttttacacaa 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29449644 gatctttgtcacacttctattggccttttctttcaccaaaggtcatccccattcacaattccacggggaatggatcccctcgtgtgagatttttacacaa 29449545  T
Q  101 gagagaagtgtgatatatgtcacaccattccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaaccactagaaa 200  Q
    ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449544 gagagaagtgtgat----gtcacaccattccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaaccactagaaa 29449449  T
Q  201 caatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttgtnnnn 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  29449448 caatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttgt-aaa 29449350  T
Q  301 nnnnncacatgaatatcatataagtaaactcaacaaattagctagtcacgtgcatgggccgaatgtccatgtatcattg 379  Q
         |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  29449349 aaaaacacatgaatatcatataagtaaactcaacaaattagctagtca----catgggccgaatgtccatgtatcattg 29449275  T

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Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 29462487 - 29462304
Alignment:
Q  1 gatctttgtcacacttctgttggccttttctttcaccaaaggtcatccccattcacaattccatggggaatggatcccctcgtgtgagatttttacacaa 100  Q
    |||||||||||||||| ||| ||||||| ||||||||| |||||||||||||||| |||||||  || || |||||||||| |||||||||||||||| |    
T  29462487 gatctttgtcacacttttgtaggccttt-ctttcaccataggtcatccccattcataattccaccggaaacggatcccctcatgtgagatttttacacga 29462389  T
Q  101 gagagaagtgtgatatatgtcacaccattccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaa 190  Q
    ||||||||| ||    |||||| |||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29462388 gagagaagt-tg----atgtcataccatttcagaagagagatacaaatgtgtggagctacattccttatcaattcaatccttcccacaaa 29462304  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 29462283 - 29462215
Alignment:
Q  193 actagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgt 261  Q
    ||||||||||| ||||||||| | |||| ||| ||||||| |||||||||||||| |||||||||||||    
T  29462283 actagaaacaacttgagcatttggtttctgctacacatcattggttcttctttcattcccttacaatgt 29462215  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 29444321 - 29444247
Alignment:
Q  218 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 292  Q
    ||||||| | |||||  |||||||| |||||||||||||||| ||  ||||||||||||| ||||||||| ||||    
T  29444321 ttcagctacgcatcaaaggttcttccttcactcccttacaatttcagtttaaatccttgggacaagaagttatcc 29444247  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 29454328 - 29454254
Alignment:
Q  218 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 292  Q
    ||||||| |||||||  | |||||| |||||||| ||||||| || ||||||||||| || ||||||||||||||    
T  29454328 ttcagctacacatcaaagattcttccttcactccattacaatttcaatttaaatcctcgggacaagaagtcatcc 29454254  T

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Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 9363454 - 9363762
Alignment:
Q  1 gatctttgtcacacttctgttggccttttctttcaccaaaggtcatccccattcacaattccatg-----gggaatggatcccctcgtgtgagattttta 95  Q
    |||||||||  |||||| || ||||||| ||| ||||| ||||||||||||||||| |||| ||      |||||||||||||||| ||||||||||||     
T  9363454 gatctttgtggcacttcagtaggccttt-cttccaccataggtcatccccattcacgattcgattccaccgggaatggatcccctcatgtgagattttt- 9363551  T
Q  96 cacaagagagaagtgtgatatatgtcacaccattccagaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaacca-- 193  Q
     ||| ||||||||||||     |||||||||| || ||||| ||||||||||||| ||||||||||||||||||||||||||  |||||| | |||||      
T  9363552 -acatgagagaagtgtg----gtgtcacaccactcaagaagagagatacaaatggatggagctacattccttatcaattcaactcttcccgctaaccaag 9363646  T
Q  194 -----------------ctagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttg 276  Q
                      ||||||||| ||||| || ||  ||||||| ||||||  |||||||||| |||||||||||||||| | |||||||||||||    
T  9363647 gtgactcattccgtcgcttagaaacaacttgagtatccggcttcagctacacatccctggttcttctatcactcccttacaatgacaatttaaatccttg 9363746  T
Q  277 gtacaagaagtcatcc 292  Q
    | ||||||||||||||    
T  9363747 ggacaagaagtcatcc 9363762  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 12019867 - 12019793
Alignment:
Q  218 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 292  Q
    ||||||| |||||||  | |||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  12019867 ttcagctacacatcaacgattcttccttcactcccttacaatgtcaatttaaatcctttggacaagaagtcatcc 12019793  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 11988400 - 11988326
Alignment:
Q  218 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 292  Q
    ||||||| |||| ||  |||||||| ||||||||||||||||||| ||||||||||||   ||||||||||||||    
T  11988400 ttcagctacacaacaaaggttcttccttcactcccttacaatgtcaatttaaatccttttgacaagaagtcatcc 11988326  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 288
Target Start/End: Complemental strand, 12007220 - 12007150
Alignment:
Q  218 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtc 288  Q
    ||||||| ||||| |  |||||||| ||||||||||||||| ||| ||||||||||| || ||| ||||||    
T  12007220 ttcagctacacataacaggttcttccttcactcccttacaaggtcaatttaaatcctcgggacaggaagtc 12007150  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 9069117 - 9069069
Alignment:
Q  145 aaatgggtggagctacattccttatcaattcaatccttcccacaaacca 193  Q
    ||||||||| |||| ||||| |||||||||||| | |||||||||||||    
T  9069117 aaatgggtgcagcttcattctttatcaattcaacctttcccacaaacca 9069069  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 296
Target Start/End: Original strand, 9287782 - 9287882
Alignment:
Q  196 agaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttg 295  Q
    |||||||| |||||||| |  |||||||| |||||||  ||| ||||  ||  ||||||||||| || ||||||||||| || |||| ||||| ||||||    
T  9287782 agaaacaacttgagcatcctgtttcagctgcacatcacaggtacttccatccatcccttacaatctcaatttaaatcctcgggacaaaaagtcgtccttg 9287881  T
Q  296 t 296  Q
    |    
T  9287882 t 9287882  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 292
Target Start/End: Complemental strand, 41968397 - 41968300
Alignment:
Q  196 agaaacaatttgagcattc-gttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 292  Q
    |||||||| |||||||| | | |||||||| |||||||  ||| |||| |||  ||||||||||| || |||||||||||||| ||||||||||||||    
T  41968397 agaaacaacttgagcatcctggtttcagctgcacatcacaggtccttccttccatcccttacaatctcaatttaaatccttgggacaagaagtcatcc 41968300  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 45242651 - 45242715
Alignment:
Q  229 atcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcct 293  Q
    |||| ||||||||| ||  ||| ||| ||||||| |||||||||| ||| |||||||||||||||    
T  45242651 atcactggttcttccttggctctctttcaatgtcaatttaaatccctggaacaagaagtcatcct 45242715  T

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