View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12060_low_8 (Length: 355)
Name: NF12060_low_8
Description: NF12060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12060_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 7 - 344
Target Start/End: Complemental strand, 38621228 - 38620891
Alignment:
| Q |
7 |
ctattctttgccaagacattctccgtaagcattttaactatctcaatcttttcaaaatggatcgtctactgttagctatacagtgcagccaactacaaac |
106 |
Q |
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| T |
38621228 |
ctattctttgccaagacattctccgtaagcattttaactatcgcaatcttttcaaaatggatcgtctactgttagctatacagtgcagccaactacaaac |
38621129 |
T |
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| Q |
107 |
tgttagatgaagaaagaaagaagaaaatctaataatctatagctgtctgcattgtaaggttgactatagaggatcgaggtttggatcttttttagactca |
206 |
Q |
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| T |
38621128 |
tgttagatgaagaaagaaagaagaaaatctaataatctatagctgtctgcattgtaagattgactatagaggatcgaggtttggatcttttttagactca |
38621029 |
T |
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| Q |
207 |
aaattaaaatatcaggtttccaatgtcgatgtaatctttaggtaaaattaatccgttttatttggtccaactctcctgagttttgatctttactctgcga |
306 |
Q |
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| T |
38621028 |
aaattaaaatatcaggtttccaatgtcgatgtaatctttaggtaaaattaatcagttttatttggtccaactctcctgagctttgatctttactctgcga |
38620929 |
T |
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| Q |
307 |
ataacttatttgcatttatcttaaagtttctgtctgtg |
344 |
Q |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
38620928 |
ataacttatttgcatttatcttaaagtttctgtttgtg |
38620891 |
T |
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