View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12060_low_9 (Length: 344)
Name: NF12060_low_9
Description: NF12060
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12060_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 37928476 - 37928153
Alignment:
| Q |
17 |
gaattggttcaactcaaaacttgattcgagtttgacacgattaaagttcacgaacaacttgaatcaaacaagtcaaactatatcaagtttagcaaattta |
116 |
Q |
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| T |
37928476 |
gaattggttcaactcaaaacttgattcgagtttgacacgattaaagttcacaaacaacttgaatcaaacaagtcaaactatatcaagtttagcaaattta |
37928377 |
T |
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| Q |
117 |
gttaacgaacttattaaaattatgatggatttgcttaaatcatagataatatttcatgtaaataacaaaaccacctttgaatcccagcctgagtattaat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37928376 |
gttaacgaacttattaaaattatgatggatttgcttaaatcatagataatatttcatgtaaataacaaaaccacctttgaatcccagcctgagtactaat |
37928277 |
T |
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| Q |
217 |
gtcaagtgcatgtaaagaaaatagtgactgacctggttacttgtgaatcccagcctgagagtccagctacttggtttagagcagccttccactcgtccac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37928276 |
gtcaagtgcatgtaaagaaaatagtgactgacctggttacttgtgaatcccagcctgagagtccagctacttggtttagagcagccttccactcgtccac |
37928177 |
T |
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| Q |
317 |
tctgcagctatatcgttgttgatg |
340 |
Q |
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| T |
37928176 |
tctgcagctatatcgttgttgatg |
37928153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 25720676 - 25720620
Alignment:
| Q |
251 |
ggttacttgtgaatcccagcctgagagtccagctacttggtttagagcagccttcca |
307 |
Q |
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| T |
25720676 |
ggttacttgtgaatcccatcctgacagtccagctacttgagttagagcatccttcca |
25720620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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